ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17h12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full insert sequence Length = 3262 Score = 264 bits (133), Expect = 1e-67 Identities = 160/169 (94%) Strand = Plus / Plus Query: 116 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 175 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 158 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 217 Query: 176 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaaggcggcggcgtgta 235 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 218 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaaggcggcggcgtgta 277 Query: 236 tggaggtcggcgtgggctccttcagcgacccggaggggctcgagggcct 284 ||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct: 278 tggaggttggcgtgggctcgttcagcgacccggaggggctcgagggcct 326
>ref|XM_463457.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2841 Score = 159 bits (80), Expect = 6e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 116 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 175 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 35 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 94 Query: 176 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 223 |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 95 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 142 Score = 107 bits (54), Expect = 2e-20 Identities = 60/62 (96%) Strand = Plus / Plus Query: 223 gcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagggc 282 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct: 202 gcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagggc 261 Query: 283 ct 284 || Sbjct: 262 ct 263
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 159 bits (80), Expect = 6e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 116 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 175 |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 32978328 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 32978387 Query: 176 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 223 |||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 32978388 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaagg 32978435 Score = 159 bits (80), Expect = 6e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 116 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 175 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 32958783 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 32958842 Query: 176 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 223 |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 32958843 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 32958890 Score = 119 bits (60), Expect = 5e-24 Identities = 63/64 (98%) Strand = Plus / Plus Query: 221 aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 280 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 32978568 aggcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagg 32978627 Query: 281 gcct 284 |||| Sbjct: 32978628 gcct 32978631 Score = 111 bits (56), Expect = 1e-21 Identities = 62/64 (96%) Strand = Plus / Plus Query: 221 aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 280 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 32959022 aggcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagg 32959081 Query: 281 gcct 284 |||| Sbjct: 32959082 gcct 32959085
>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0010B10 Length = 155263 Score = 159 bits (80), Expect = 6e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 116 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 175 |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 44556 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 44615 Query: 176 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 223 |||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 44616 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaagg 44663 Score = 159 bits (80), Expect = 6e-36 Identities = 101/108 (93%) Strand = Plus / Plus Query: 116 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 175 |||||||||||||| |||||||||| ||||||||||||||||||||||| || |||||| Sbjct: 25011 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 25070 Query: 176 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 223 |||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct: 25071 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 25118 Score = 119 bits (60), Expect = 5e-24 Identities = 63/64 (98%) Strand = Plus / Plus Query: 221 aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 280 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 44796 aggcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagg 44855 Query: 281 gcct 284 |||| Sbjct: 44856 gcct 44859 Score = 111 bits (56), Expect = 1e-21 Identities = 62/64 (96%) Strand = Plus / Plus Query: 221 aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 280 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 25250 aggcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagg 25309 Query: 281 gcct 284 |||| Sbjct: 25310 gcct 25313
>ref|XM_463460.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2838 Score = 157 bits (79), Expect = 2e-35 Identities = 100/107 (93%) Strand = Plus / Plus Query: 116 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 175 |||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||| Sbjct: 23 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 82 Query: 176 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaag 222 |||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct: 83 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaag 129 Score = 115 bits (58), Expect = 8e-23 Identities = 61/62 (98%) Strand = Plus / Plus Query: 223 gcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagggc 282 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 190 gcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagggc 249 Query: 283 ct 284 || Sbjct: 250 ct 251
>ref|XM_478770.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3199 Score = 117 bits (59), Expect = 2e-23 Identities = 122/143 (85%) Strand = Plus / Plus Query: 139 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 198 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 244 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 303 Query: 199 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 258 |||||||| |||||||||||||||||||||||| ||| | ||| ||||||| |||| Sbjct: 304 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaacgtctcggtgggctacttc 363 Query: 259 agcgacccggaggggctcgaggg 281 |||| || |||||||||||||| Sbjct: 364 tgcgatcccgaggggctcgaggg 386
>dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F09, full insert sequence Length = 3200 Score = 117 bits (59), Expect = 2e-23 Identities = 122/143 (85%) Strand = Plus / Plus Query: 139 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 198 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 244 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 303 Query: 199 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 258 |||||||| |||||||||||||||||||||||| ||| | ||| ||||||| |||| Sbjct: 304 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaacgtctcggtgggctacttc 363 Query: 259 agcgacccggaggggctcgaggg 281 |||| || |||||||||||||| Sbjct: 364 tgcgatcccgaggggctcgaggg 386
>ref|XM_478769.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2997 Score = 115 bits (58), Expect = 8e-23 Identities = 85/94 (90%) Strand = Plus / Plus Query: 139 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 198 |||| ||||||||| | |||||||||| | ||||||||||||| ||||||||||||||| Sbjct: 130 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 189 Query: 199 atcagcgacgccgacaccgacaaggcggcggcgt 232 |||||||| |||||||||||||||||||||||| Sbjct: 190 gtcagcgaccccgacaccgacaaggcggcggcgt 223
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 139 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 198 |||| ||||||||| | |||||||||| | ||||||||||||| ||||||||||||||| Sbjct: 22901086 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 22901027 Query: 199 atcagcgacgccgacaccgacaagg 223 |||||||| ||||||||||||||| Sbjct: 22901026 gtcagcgaccccgacaccgacaagg 22901002 Score = 89.7 bits (45), Expect = 5e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 139 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 198 |||| ||||||||| | |||||||||| | ||||||||||||| |||||||||||| || Sbjct: 22937406 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcgtc 22937347 Query: 199 atcagcgacgccgacaccgacaagg 223 ||||||||| |||||||||| |||| Sbjct: 22937346 atcagcgaccccgacaccgataagg 22937322 Score = 89.7 bits (45), Expect = 5e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 139 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 198 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 22918850 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 22918791 Query: 199 atcagcgacgccgacaccgacaagg 223 |||||||| ||||||||||||||| Sbjct: 22918790 gtcagcgaccccgacaccgacaagg 22918766
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 97.6 bits (49), Expect = 2e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 139 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 198 |||| ||||||||| | |||||||||| | ||||||||||||| ||||||||||||||| Sbjct: 94353 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 94294 Query: 199 atcagcgacgccgacaccgacaagg 223 |||||||| ||||||||||||||| Sbjct: 94293 gtcagcgaccccgacaccgacaagg 94269 Score = 89.7 bits (45), Expect = 5e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 139 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 198 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 112117 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 112058 Query: 199 atcagcgacgccgacaccgacaagg 223 |||||||| ||||||||||||||| Sbjct: 112057 gtcagcgaccccgacaccgacaagg 112033
>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1121_A05 Length = 172668 Score = 89.7 bits (45), Expect = 5e-15 Identities = 75/85 (88%) Strand = Plus / Minus Query: 139 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 198 |||| ||||||||| | |||||||||| | ||||||||||||| |||||||||||| || Sbjct: 12620 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcgtc 12561 Query: 199 atcagcgacgccgacaccgacaagg 223 ||||||||| |||||||||| |||| Sbjct: 12560 atcagcgaccccgacaccgataagg 12536
>gb|AY022725.1| Oryza sativa microsatellite MRG5050 containing (CCG)X10, closest to marker R2561, genomic sequence Length = 230 Score = 73.8 bits (37), Expect = 3e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 139 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 198 |||| ||||||||| | |||||||||| | |||||||||||| ||||||||||||||| Sbjct: 77 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 18 Query: 199 atcagcgacgccgacac 215 |||||||| ||||||| Sbjct: 17 gtcagcgaccccgacac 1
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gagtaccgccgcctgctgct 173 |||||||||||||||||||| Sbjct: 3721129 gagtaccgccgcctgctgct 3721148
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 gagtaccgccgcctgctgct 173 |||||||||||||||||||| Sbjct: 1356741 gagtaccgccgcctgctgct 1356760 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,324,498 Number of Sequences: 3902068 Number of extensions: 1324498 Number of successful extensions: 24879 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24704 Number of HSP's gapped (non-prelim): 173 length of query: 286 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 264 effective length of database: 17,147,199,772 effective search space: 4526860739808 effective search space used: 4526860739808 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
