ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17h10 |
|---|---|
| Clone Library Name | barley_pub |
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 31.2 bits (69), Expect = 0.80 Identities = 17/32 (53%), Positives = 17/32 (53%) Frame = +3 Query: 72 G*LEHSGDPAGGPAAEGRPSRGGLHGARAPAG 167 G L GDP G P AEG P G HGA P G Sbjct: 521 GWLGTKGDP-GPPGAEGPPGLPGKHGASGPPG 551
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 30.8 bits (68), Expect = 1.0 Identities = 12/23 (52%), Positives = 14/23 (60%) Frame = +3 Query: 84 HSGDPAGGPAAEGRPSRGGLHGA 152 H +P GGP G PSRGG G+ Sbjct: 1289 HRDEPFGGPPGSGTPSRGGRSGS 1311
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 30.0 bits (66), Expect = 1.8 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = +3 Query: 96 PAGGPAAEGRPSR-GGLHGARAPAGG 170 P GP+A GRP R GG GA P GG Sbjct: 264 PRPGPSAGGRPGRPGGAPGAGRPGGG 289
>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor| Length = 1356 Score = 29.3 bits (64), Expect = 3.0 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = +3 Query: 78 LEHSGDPAGGPAAEGRPSRGGLHGARAPAG 167 LE G P G P A G GG+ GA AG Sbjct: 404 LEGRGGPIGMPGARGATGPGGIRGAPGDAG 433
>RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)| Length = 681 Score = 28.9 bits (63), Expect = 4.0 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 96 PAGGPAAEGRPSRGGLHGARAPAGG 170 PAG PA + +P+ H ARAPA G Sbjct: 177 PAGEPATQEQPTPESRHPARAPARG 201
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 28.9 bits (63), Expect = 4.0 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +3 Query: 87 SGDPAGGPAAEGRPSRGGLHGARAPAG 167 S P+G P G P GL GA PAG Sbjct: 389 SAGPSGPPGLRGSPGSRGLPGADGPAG 415
>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor| Length = 3119 Score = 28.9 bits (63), Expect = 4.0 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 96 PAGGPAAEGRPSRGGLHGARAPAG 167 PAGGP A+G G++GA P G Sbjct: 2759 PAGGPGAKGPRGERGINGAVGPPG 2782
>RP3A_RAT (P47709) Rabphilin-3A (Exophilin-1)| Length = 684 Score = 28.9 bits (63), Expect = 4.0 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 96 PAGGPAAEGRPSRGGLHGARAPAGG 170 PAG PA + +P+ H ARAPA G Sbjct: 177 PAGEPATQEQPTPESRHPARAPARG 201
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 28.5 bits (62), Expect = 5.2 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 96 PAGGPAAEGRPSRGGLHGARAPAG 167 PAG P A+G+P G +GA AG Sbjct: 384 PAGNPGADGQPGAKGANGAPGIAG 407
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.5 bits (62), Expect = 5.2 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 96 PAGGPAAEGRPSRGGLHGARAPAG 167 PAG P A+G+P G +GA AG Sbjct: 373 PAGNPGADGQPGAKGANGAPGIAG 396
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 28.5 bits (62), Expect = 5.2 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 96 PAGGPAAEGRPSRGGLHGARAPAG 167 PAG P A+G+P G +GA AG Sbjct: 373 PAGNPGADGQPGAKGANGAPGIAG 396
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 28.5 bits (62), Expect = 5.2 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 96 PAGGPAAEGRPSRGGLHGARAPAG 167 PAG P A+G+P G +GA AG Sbjct: 380 PAGNPGADGQPGAKGANGAPGIAG 403
>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)| Length = 1262 Score = 28.1 bits (61), Expect = 6.8 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +3 Query: 96 PAGGPAAEGRPSRGGLHGARAPAGG 170 P GGP A G P G+ G R GG Sbjct: 843 PQGGPGAPGPPGPQGVKGERGSPGG 867
>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor| Length = 3063 Score = 28.1 bits (61), Expect = 6.8 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 96 PAGGPAAEGRPSRGGLHGARAPAG 167 PAGGP A+G G+ GA P G Sbjct: 2754 PAGGPGAKGPRGERGISGAIGPPG 2777
>CSP_PLACB (P08672) Circumsporozoite protein precursor (CS)| Length = 378 Score = 27.7 bits (60), Expect = 8.9 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +3 Query: 69 GG*LEHSGDPAGGPAAEGRPSRGGLHGARAPAGG 170 GG G+ AGG A G+P+ GG PA G Sbjct: 212 GGQPAAGGNQAGGNRAGGQPAAGGNQAGGQPAAG 245
>IF2_DESVH (Q72ER1) Translation initiation factor IF-2| Length = 1079 Score = 27.7 bits (60), Expect = 8.9 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +3 Query: 96 PAGGPAAEGRPSRGGLHGARAPAGG 170 PAGGP EG+ G GA P GG Sbjct: 364 PAGGPRPEGQREGGYRPGAPRPEGG 388
>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1418 Score = 27.7 bits (60), Expect = 8.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +3 Query: 96 PAGGPAAEGRPSRGGLHGARAPAG 167 PAG P A+G P G+ G R AG Sbjct: 667 PAGPPGAQGPPGLQGMPGERGAAG 690
>ANXA7_XENLA (Q92125) Annexin A7 (Annexin VII) (Synexin)| Length = 512 Score = 27.7 bits (60), Expect = 8.9 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Frame = +3 Query: 69 GG*LEHSGD-PAGGPAAEGRPSRGGLHGARAPAGG 170 GG H+G PA G G PS G G APAGG Sbjct: 57 GGGYPHAGGYPAPGGYPGGMPSYPGAPGFGAPAGG 91 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,090,222 Number of Sequences: 219361 Number of extensions: 169388 Number of successful extensions: 2301 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1077 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2288 length of database: 80,573,946 effective HSP length: 32 effective length of database: 73,554,394 effective search space used: 1765305456 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
