ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17h06 |
|---|---|
| Clone Library Name | barley_pub |
>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)| Length = 859 Score = 71.2 bits (173), Expect = 6e-13 Identities = 32/36 (88%), Positives = 32/36 (88%) Frame = +1 Query: 223 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 LY ELWHACAGPLVTVPR D VFYFPQGHIEQVEA Sbjct: 58 LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEA 93
>ARFA_ARATH (Q8L7G0) Auxin response factor 1| Length = 665 Score = 67.0 bits (162), Expect = 1e-11 Identities = 28/40 (70%), Positives = 34/40 (85%) Frame = +1 Query: 217 DPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEAXM 336 D L ELWHACAGPLVT+PR G+ V+YFP+GH+EQ+EA M Sbjct: 17 DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQLEASM 56
>ARFK_ARATH (Q9ZPY6) Auxin response factor 11| Length = 601 Score = 64.7 bits (156), Expect = 5e-11 Identities = 29/41 (70%), Positives = 32/41 (78%) Frame = +1 Query: 208 SAGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 S D LY ELW ACAGPLV VPR G+ VFYFPQGH+EQ+ A Sbjct: 13 SNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQLVA 53
>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)| Length = 1086 Score = 63.5 bits (153), Expect = 1e-10 Identities = 27/39 (69%), Positives = 31/39 (79%) Frame = +1 Query: 220 PLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEAXM 336 P+ +LWHACAGPLV++P VG LV YFPQGH EQV A M Sbjct: 19 PINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM 57
>ARFI_ARATH (Q9XED8) Auxin response factor 9| Length = 638 Score = 62.4 bits (150), Expect = 3e-10 Identities = 26/39 (66%), Positives = 32/39 (82%) Frame = +1 Query: 214 GDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 G+ LYDELW CAGPLV VP+ + V+YFPQGH+EQ+EA Sbjct: 6 GEYLYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEA 44
>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)| Length = 608 Score = 60.1 bits (144), Expect = 1e-09 Identities = 25/38 (65%), Positives = 31/38 (81%) Frame = +1 Query: 208 SAGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 321 SAG + ELWHACAGPL+++P+ G LV YFPQGH+EQ Sbjct: 46 SAGGGVCLELWHACAGPLISLPKRGSLVLYFPQGHLEQ 83
>ARFR_ARATH (Q9C5W9) Auxin response factor 18| Length = 602 Score = 60.1 bits (144), Expect = 1e-09 Identities = 26/38 (68%), Positives = 29/38 (76%) Frame = +1 Query: 217 DPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 D LY ELW CAGPLV VPR + VFYFPQGH+EQ+ A Sbjct: 20 DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVA 57
>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)| (Protein BIPOSTO) (Auxin-responsive protein IAA21/IAA23/IAA25) Length = 1164 Score = 60.1 bits (144), Expect = 1e-09 Identities = 25/35 (71%), Positives = 28/35 (80%) Frame = +1 Query: 232 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEAXM 336 ELWHACAGPL+++P G LV YFPQGH EQV A M Sbjct: 24 ELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASM 58
>ARFD_ARATH (Q9ZTX9) Auxin response factor 4| Length = 788 Score = 58.5 bits (140), Expect = 4e-09 Identities = 22/33 (66%), Positives = 28/33 (84%) Frame = +1 Query: 223 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 321 +Y ELWHACAGPL +P+ G++V YFPQGH+EQ Sbjct: 62 IYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ 94
>ARFF_ARATH (Q9ZTX8) Auxin response factor 6| Length = 933 Score = 58.5 bits (140), Expect = 4e-09 Identities = 26/36 (72%), Positives = 28/36 (77%) Frame = +1 Query: 223 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 L ELWHACAGPLV++P VG V YFPQGH EQV A Sbjct: 20 LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAA 55
>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14| Length = 605 Score = 58.2 bits (139), Expect = 5e-09 Identities = 22/36 (61%), Positives = 30/36 (83%) Frame = +1 Query: 223 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 +Y++LW CAGPL +P++G+ V+YFPQGHIE VEA Sbjct: 24 MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEA 59
>ARFW_ARATH (Q9LP07) Putative auxin response factor 23| Length = 222 Score = 58.2 bits (139), Expect = 5e-09 Identities = 22/36 (61%), Positives = 30/36 (83%) Frame = +1 Query: 223 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 +Y++LW CAGPL +P++G+ V+YFPQGHIE VEA Sbjct: 24 MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEA 59
>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)| (Auxin-responsive protein IAA24) Length = 902 Score = 57.8 bits (138), Expect = 7e-09 Identities = 24/31 (77%), Positives = 27/31 (87%) Frame = +1 Query: 232 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQV 324 ELWHACAGPLV +P+VG LV+YF QGH EQV Sbjct: 54 ELWHACAGPLVCLPQVGSLVYYFSQGHSEQV 84
>ARFH_ARATH (Q9FGV1) Auxin response factor 8| Length = 811 Score = 56.6 bits (135), Expect = 1e-08 Identities = 25/36 (69%), Positives = 27/36 (75%) Frame = +1 Query: 223 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 L ELWHACAGPLV++P G V YFPQGH EQV A Sbjct: 19 LNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAA 54
>ARFL_ARATH (Q9XID4) Putative auxin response factor 12| Length = 593 Score = 56.2 bits (134), Expect = 2e-08 Identities = 21/35 (60%), Positives = 29/35 (82%) Frame = +1 Query: 223 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVE 327 +Y++LW CAGPL +P++G+ V+YFPQGHIE VE Sbjct: 24 VYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVE 58
>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15| Length = 593 Score = 55.5 bits (132), Expect = 3e-08 Identities = 21/36 (58%), Positives = 30/36 (83%) Frame = +1 Query: 223 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 +Y++LW CAGPL +P++G+ V+YFPQG+IE VEA Sbjct: 24 MYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEA 59
>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22| Length = 598 Score = 55.1 bits (131), Expect = 4e-08 Identities = 20/36 (55%), Positives = 30/36 (83%) Frame = +1 Query: 223 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 +Y++LW CAGPL +P++G+ ++YFPQG+IE VEA Sbjct: 24 MYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEA 59
>ARFM_ARATH (Q9FX25) Putative auxin response factor 13| Length = 623 Score = 55.1 bits (131), Expect = 4e-08 Identities = 20/35 (57%), Positives = 29/35 (82%) Frame = +1 Query: 223 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVE 327 +Y++LW+ CAGPL +P+ G+ V+YFPQGHIE +E Sbjct: 24 MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIE 58
>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21| Length = 606 Score = 53.9 bits (128), Expect = 1e-07 Identities = 20/36 (55%), Positives = 30/36 (83%) Frame = +1 Query: 223 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 +Y++LW CAGPL +P++G+ V+YFPQG+IE V+A Sbjct: 24 MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQA 59
>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20| Length = 606 Score = 53.9 bits (128), Expect = 1e-07 Identities = 20/36 (55%), Positives = 30/36 (83%) Frame = +1 Query: 223 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 +Y++LW CAGPL +P++G+ V+YFPQG+IE V+A Sbjct: 24 MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDA 59
>ARFJ_ARATH (Q9SKN5) Auxin response factor 10| Length = 693 Score = 47.0 bits (110), Expect = 1e-05 Identities = 18/33 (54%), Positives = 22/33 (66%) Frame = +1 Query: 232 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQVEA 330 +LWHACAG +V +P + VFYF QGH E A Sbjct: 10 QLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHA 42
>ARFP_ARATH (Q93YR9) Auxin response factor 16| Length = 670 Score = 46.6 bits (109), Expect = 2e-05 Identities = 18/29 (62%), Positives = 22/29 (75%) Frame = +1 Query: 232 ELWHACAGPLVTVPRVGDLVFYFPQGHIE 318 +LWHACAG +V +P + VFYFPQGH E Sbjct: 19 QLWHACAGGMVRMPPMNSKVFYFPQGHAE 47
>ARFQ_ARATH (Q84WU6) Auxin response factor 17| Length = 585 Score = 41.2 bits (95), Expect = 6e-04 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 4/41 (9%) Frame = +1 Query: 208 SAGDPLYDE----LWHACAGPLVTVPRVGDLVFYFPQGHIE 318 +AGD + E +W ACAG V +P + V+YFPQGH+E Sbjct: 7 TAGDINHREVDPTIWRACAGASVQIPVLHSRVYYFPQGHVE 47
>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1| (WD-repeat protein 9) Length = 2304 Score = 32.3 bits (72), Expect = 0.30 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +1 Query: 268 VPRVGDLVFYFPQGHIEQVEA 330 VP++GD V YFPQGH +EA Sbjct: 959 VPQMGDEVIYFPQGHEAYIEA 979
>BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing protein 1| (WD-repeat protein 9) Length = 2320 Score = 28.9 bits (63), Expect = 3.3 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +1 Query: 268 VPRVGDLVFYFPQGHIEQVEA 330 VP++GD V YF QGH +EA Sbjct: 958 VPQMGDEVIYFRQGHEAYIEA 978
>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)| [Includes: ATP-dependent asparagine adenylase (AsnA) (Asparagine activase); ATP-dependent glutamine adenylase (GlnA) (Glutamine activase); ATP-dependent tyrosine adenylase (TyrA) (Ty Length = 6486 Score = 27.7 bits (60), Expect = 7.4 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +1 Query: 265 TVPRVGDLVFYFPQGHIE 318 T+ R GD+V Y P GHIE Sbjct: 1871 TMYRTGDMVRYLPDGHIE 1888
>TCPZ_YEAST (P39079) T-complex protein 1 subunit zeta (TCP-1-zeta) (CCT-zeta)| Length = 546 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -3 Query: 336 HXGLHLLDVPLREVEDEVPDARDGDERAGAGV 241 + G LDV L VEDE+ DA+D DE GV Sbjct: 461 NSGFDPLDV-LAMVEDELDDAQDSDETRYVGV 491
>NICA_MOUSE (P57716) Nicastrin precursor| Length = 708 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = -3 Query: 297 VEDEVPDARDGDERAGAGVPELVVERI 217 V+++V D E++GAGVPE+V+ R+ Sbjct: 389 VKNQVEDLLATLEKSGAGVPEVVLRRL 415 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 15,799,581 Number of Sequences: 219361 Number of extensions: 170781 Number of successful extensions: 703 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 688 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 703 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
