ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17h05 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 61.6 bits (148), Expect = 4e-10 Identities = 35/98 (35%), Positives = 51/98 (52%) Frame = +3 Query: 81 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 260 M+ + L SPD N+R AE ++ + +++ L+ EL+ND P R AG+ Sbjct: 1 MNAGEFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLA 60 Query: 261 LKNSLDAEDSARKELLIQQWVSLDHSIKSQIKESLLIT 374 LKN++ A + ARK Q W SL IK Q+K L T Sbjct: 61 LKNAITAREEARKLEYQQLWQSLPVEIKQQVKSLALQT 98
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 54.7 bits (130), Expect = 5e-08 Identities = 32/98 (32%), Positives = 55/98 (56%) Frame = +3 Query: 81 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 260 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 261 LKNSLDAEDSARKELLIQQWVSLDHSIKSQIKESLLIT 374 +KNSL ++D K Q+W+++D + + ++K +L T Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQT 98
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 54.7 bits (130), Expect = 5e-08 Identities = 32/98 (32%), Positives = 55/98 (56%) Frame = +3 Query: 81 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 260 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 261 LKNSLDAEDSARKELLIQQWVSLDHSIKSQIKESLLIT 374 +KNSL ++D K Q+W+++D + + ++K +L T Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQT 98
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit)| (Protein ketel) Length = 884 Score = 48.5 bits (114), Expect = 4e-06 Identities = 31/96 (32%), Positives = 46/96 (47%) Frame = +3 Query: 81 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 260 M + IL SPD N +A+ ++Q NLP FL +LS L N +R AG+ Sbjct: 7 MQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILVNTANSAVARMAAGLQ 66 Query: 261 LKNSLDAEDSARKELLIQQWVSLDHSIKSQIKESLL 368 LKN L ++D + +W I+ IK ++L Sbjct: 67 LKNHLTSKDEKVSQQYQDRWHQFPSEIRELIKNNIL 102
>IMB1_YEAST (Q06142) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 861 Score = 48.5 bits (114), Expect = 4e-06 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%) Frame = +3 Query: 114 SPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIILKNSLDAEDSA 293 SPD N+R +E +K+ N F S L ++ E R LA + LKN L ++DS Sbjct: 16 SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 Query: 294 RKELLIQQWVS-LDHSIKSQIKESLL 368 + + Q+W++ + K+QIK + L Sbjct: 76 KTQQFAQRWITQVSPEAKNQIKTNAL 101
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 44.3 bits (103), Expect = 7e-05 Identities = 29/98 (29%), Positives = 53/98 (54%) Frame = +3 Query: 81 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 260 M++ IL SPD AA+ +++ +NLP FL+ LS L+N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 261 LKNSLDAEDSARKELLIQQWVSLDHSIKSQIKESLLIT 374 ++ L ++D K Q+W+++D + + ++K +L T Sbjct: 61 IR-LLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQT 97
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Frame = +3 Query: 78 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 254 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 255 IILKNSLDA 281 +ILKN++ A Sbjct: 70 LILKNNVKA 78
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 39.7 bits (91), Expect = 0.002 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%) Frame = +3 Query: 78 VMDITQILLAAQSPDGNLRSAAEANIKQF-QEQNLPNFLLSLSVELSNDERPPESRRLAG 254 + I Q+L +QSPD ++ + ++Q Q + N+L+ + +L +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 255 IILKNSLDA 281 +ILKN++ A Sbjct: 70 LILKNNVKA 78
>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)| Length = 887 Score = 35.0 bits (79), Expect = 0.044 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +3 Query: 78 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 254 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 255 IILKNSLDA 281 +ILKN++ A Sbjct: 68 LILKNNVKA 76
>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)| Length = 897 Score = 35.0 bits (79), Expect = 0.044 Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +3 Query: 78 VMDITQILLAAQSPDGNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAG 254 + + Q+L +QSP+ + + +KQ + + N+L+ + L +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 255 IILKNSLDA 281 +ILKN++ A Sbjct: 68 LILKNNVKA 76
>TOP2_LEICH (O61078) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1236 Score = 33.5 bits (75), Expect = 0.13 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Frame = +3 Query: 123 GNLRSAAEANIKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAGIILKNSLDAEDSARK 299 G L + N+K+ + + L + LSL +EL + R P R +++ DA+ S K Sbjct: 467 GKLLNVRNKNLKRLKTCKGLQDLFLSLGLELGKEYRSPAELRYQRLLVMTDQDADGSHIK 526 Query: 300 ELLIQQWVSL 329 L+I + SL Sbjct: 527 GLVINAFESL 536
>IMB5_YEAST (P53067) Importin beta-5 subunit (Karyopherin beta-5 subunit) (114| kDa karyopherin) Length = 1004 Score = 32.3 bits (72), Expect = 0.29 Identities = 18/62 (29%), Positives = 32/62 (51%) Frame = +3 Query: 81 MDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGII 260 MDI ++++ AQS D + R AE + Q+ + + +L+ E ESR+ A + Sbjct: 1 MDINELIIGAQSADKHTREVAETQLLQWCDSDASQVFKALANVALQHEASLESRQFALLS 60 Query: 261 LK 266 L+ Sbjct: 61 LR 62
>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC| 3.1.3.48) (Embryonic stem cell protein-tyrosine phosphatase) (ES cell phosphatase) (Osteotesticular protein-tyrosine phosphatase) (OST-PTP) Length = 1711 Score = 32.0 bits (71), Expect = 0.37 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = -2 Query: 219 HSITPPTRIGGSWEDSAPGTA*CWLLLLSEGYHLETEQLA 100 HS P R+ SW D APG + LLL YHLE++ LA Sbjct: 137 HSAGSPARLEASWSD-APGDQDSYQLLL---YHLESQTLA 172
>YBJT_ECOLI (P75822) Hypothetical protein ybjT| Length = 476 Score = 30.8 bits (68), Expect = 0.84 Identities = 15/44 (34%), Positives = 28/44 (63%) Frame = +3 Query: 228 PPESRRLAGIILKNSLDAEDSARKELLIQQWVSLDHSIKSQIKE 359 PP + R LK+ L A+D+A + L+ Q+ ++ D +++S +KE Sbjct: 254 PPTTARALIQGLKHDLLADDTALRALIPQRLIAFDDAVRSTLKE 297
>DPO4_THETN (P58965) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 384 Score = 30.0 bits (66), Expect = 1.4 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Frame = +3 Query: 150 NIKQFQEQNLPNFLLSLSVELSN-----DERPPESRRLAGIILKNSLDAEDSARKELLIQ 314 ++ + ++NL VE+ N DERP E+ R I K +D+ KELLIQ Sbjct: 199 DLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETMREIKSIGKEKTLEKDTKNKELLIQ 258 Query: 315 QWVSLDHSIKSQ-IKESL 365 + + IKE L Sbjct: 259 HLKEFSEIVSEELIKERL 276
>YEL4_YEAST (P40017) Hypothetical 103.3 kDa protein in PRO3-GCD11 intergenic| region Length = 923 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = +3 Query: 48 PRQIRSSGATVMDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELS 215 PR++ S+G D T I + A + DG SA+ A +++N+ N + + S Sbjct: 857 PREVASNGLEADDETDIEIVAGNADGTSSSASSATSLNSKKRNVINSRFDIDFDRS 912
>GCH3_METJA (Q57609) GTP cyclohydrolase III (EC 3.5.4.29) (MjGC)| Length = 268 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/51 (31%), Positives = 30/51 (58%) Frame = +3 Query: 156 KQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIILKNSLDAEDSARKELL 308 K+ QE + ++S+ +++ E P E+++LA L+ A+D RKE+L Sbjct: 70 KRIQESIRNRYPFTVSMVIASAETPYEAQKLATETLQEYGSAQDENRKEVL 120
>HUWE1_MOUSE (Q7TMY8) HECT, UBA and WWE domain-containing protein 1 (EC 6.3.2.-)| (E3 ubiquitin protein ligase URE-B1) (E3Histone) Length = 4377 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +3 Query: 39 GSIPRQIRSSGATVMDITQILLAAQSPD-GNLRSAAEANIKQFQEQNLPNFLLSLSVELS 215 G IP++++S V + TQ+L+ + + G R + EA Q + P + SLS E + Sbjct: 2781 GEIPQELQSPAEEVANSTQLLMPIELEELGPTRPSGEAETTQMELSPAPT-ITSLSPERA 2839 Query: 216 ND 221 D Sbjct: 2840 ED 2841
>DRL17_ARATH (O64790) Putative disease resistance protein At1g61300| Length = 766 Score = 28.5 bits (62), Expect = 4.1 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = +3 Query: 153 IKQFQE-QNLPNFLLSLSVELSNDERPPESRRLAGI--ILKNSLDAEDSARKELLIQQWV 323 +K+ Q+ QNL + ++LS ELS ++R + GI L+ D A E L WV Sbjct: 535 LKELQKLQNLQHLAITLSAELSLNQRLANLISILGIEGFLQKPFDLSFLASMENLSSLWV 594 Query: 324 SLDHSIKSQIKES 362 + + + +ES Sbjct: 595 KNSYFSEIKCRES 607
>RAD10_YEAST (P06838) DNA repair protein RAD10| Length = 210 Score = 28.1 bits (61), Expect = 5.4 Identities = 20/86 (23%), Positives = 35/86 (40%) Frame = +3 Query: 63 SSGATVMDITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESR 242 ++G+ ++I L Q P + R + I F +Q + S + + N +RP S Sbjct: 28 TTGSQSLEIDASKLQQQEPQTSRRINSNQVINAFNQQKPEEWTDSKATDDYNRKRPFRST 87 Query: 243 RLAGIILKNSLDAEDSARKELLIQQW 320 R +L N+ E+ L W Sbjct: 88 RPGKTVLVNTTQKENPLLNHLKSTNW 113
>IMB_XENLA (P52297) Importin beta subunit (Karyopherin beta subunit) (P97)| (Importin 90) (Fragments) Length = 260 Score = 28.1 bits (61), Expect = 5.4 Identities = 25/92 (27%), Positives = 40/92 (43%) Frame = +3 Query: 84 DITQILLAAQSPDGNLRSAAEANIKQFQEQNLPNFLLSLSVELSNDERPPESRRLAGIIL 263 ++ IL SPD E Q +NLP F++ LS L+N P S+ Sbjct: 1 ELVTILEKTVSPDRRXLKFLE----QAAVENLPTFVVELSKVLAN---PANSQ------- 46 Query: 264 KNSLDAEDSARKELLIQQWVSLDHSIKSQIKE 359 ARK Q+W+++D + + +IK+ Sbjct: 47 --------VARKAQYQQRWLAIDANARGEIKK 70
>FEOB_LEPBI (Q5XPH7) Ferrous iron transport protein B| Length = 690 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 261 LKNSLDAEDSARKELLIQQWVSLDHSIKSQIKESLLIT 374 LK L E+S RK+ + W S + S + +K+ L IT Sbjct: 156 LKTLLSKEESYRKQKRLWTWGSKEESFLTSLKQKLKIT 193
>COX3_WHEAT (P15953) Cytochrome c oxidase subunit 3 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide III) Length = 265 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 7/40 (17%) Frame = -2 Query: 225 FHHSITPPTRIGGSWEDSAPGTA*CW-------LLLLSEG 127 FH S+ P IGG W G W L+LLS G Sbjct: 105 FHSSLAPTVEIGGIWPPKGIGVLDPWEIPLLNTLILLSSG 144
>AVE3_AVESA (P80356) Avenin-3 precursor (Prolamin)| Length = 220 Score = 27.7 bits (60), Expect = 7.1 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 3/35 (8%) Frame = -3 Query: 368 QQ*LLNLRFDRVIQADPLLN---QQLLPCRIFCVQ 273 QQ LL + ++Q PLL QQL PCR F VQ Sbjct: 41 QQMLLQQQQQMLLQQQPLLQVLQQQLNPCRQFLVQ 75
>ICK_HUMAN (Q9UPZ9) Serine/threonine-protein kinase ICK (EC 2.7.11.22)| (Intestinal cell kinase) (hICK) (MAK-related kinase) (MRK) (Laryngeal cancer kinase 2) (LCK2) Length = 632 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +3 Query: 180 PNFLLSLSVELSNDERPPESRRLAGIILKNSLDAEDSA 293 P ++ +E N E P+SRR G+I +++ D++D A Sbjct: 382 PQSKITAGLEHKNGEIKPKSRRRWGLISRSTKDSDDWA 419
>DYNA_MOUSE (O08788) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1281 Score = 27.3 bits (59), Expect = 9.2 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Frame = +3 Query: 27 ASERG-SIPRQIRSSGATVMDIT---QILLAAQSPDGNLRSAAEANIKQFQEQN--LPNF 188 A ER S+ +++ + V ++T +IL A G+ +A+ +KQ +EQN L + Sbjct: 314 AEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDA 373 Query: 189 LLSLSVELSNDERPPESRRLAGIILKNSLDAEDSARKELLIQQWVSLDHSIKSQIKESL 365 L+ + +LS+ E+ E +L ++ K + + E ++ +Q+ +S S ++KE + Sbjct: 374 LVRMR-DLSSSEK-QEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAESTIDELKEQV 430
>DYNA_RAT (P28023) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) Length = 1280 Score = 27.3 bits (59), Expect = 9.2 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Frame = +3 Query: 27 ASERG-SIPRQIRSSGATVMDIT---QILLAAQSPDGNLRSAAEANIKQFQEQN--LPNF 188 A ER S+ +++ + V ++T +IL A G+ +A+ +KQ +EQN L + Sbjct: 313 AEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDA 372 Query: 189 LLSLSVELSNDERPPESRRLAGIILKNSLDAEDSARKELLIQQWVSLDHSIKSQIKESL 365 L+ + +LS+ E+ E +L ++ K + + E ++ +Q+ +S S ++KE + Sbjct: 373 LVRMR-DLSSSEK-QEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAESTIDELKEQV 429
>DYNA_HUMAN (Q14203) Dynactin-1 (150 kDa dynein-associated polypeptide)| (DP-150) (DAP-150) (p150-glued) (p135) Length = 1278 Score = 27.3 bits (59), Expect = 9.2 Identities = 30/119 (25%), Positives = 62/119 (52%), Gaps = 6/119 (5%) Frame = +3 Query: 27 ASERG-SIPRQIRSSGATVMDIT---QILLAAQSPDGNLRSAAEANIKQFQEQN--LPNF 188 A ER S+ +++ + V ++T +IL A G+ +A+ +KQ +EQN L + Sbjct: 314 AEERAESLQQEVEALKERVDELTTDLEILKAEIEEKGSDGAASSYQLKQLEEQNARLKDA 373 Query: 189 LLSLSVELSNDERPPESRRLAGIILKNSLDAEDSARKELLIQQWVSLDHSIKSQIKESL 365 L+ + +LS+ E+ E +L ++ K + + E ++ +Q+ +S S ++KE + Sbjct: 374 LVRMR-DLSSSEK-QEHVKLQKLMEKKNQELEVVRQQRERLQEELSQAESTIDELKEQV 430 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,909,022 Number of Sequences: 219361 Number of extensions: 859841 Number of successful extensions: 2579 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2534 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2578 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
