ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl17h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP000485.5| Homo sapiens genomic DNA, chromosome 11, clone:C... 48 0.013
2dbj|AP003176.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 48 0.013
3gb|AC154719.2| Mus musculus BAC clone RP24-370O15 from 16, compl... 46 0.053
4emb|CT025522.17| Mouse DNA sequence from clone RP23-332L23 on ch... 46 0.053
5gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 0.83
6gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster... 40 3.3

>dbj|AP000485.5| Homo sapiens genomic DNA, chromosome 11, clone:CMB9-21L24, complete
              sequence
          Length = 139072

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 129    tccatcgcgttcgctccccacacccttc 156
              ||||| ||||||||||||||||||||||
Sbjct: 135347 tccatggcgttcgctccccacacccttc 135320



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>dbj|AP003176.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-15L8, complete
            sequences
          Length = 182769

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 129  tccatcgcgttcgctccccacacccttc 156
            ||||| ||||||||||||||||||||||
Sbjct: 5721 tccatggcgttcgctccccacacccttc 5694



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>gb|AC154719.2| Mus musculus BAC clone RP24-370O15 from 16, complete sequence
          Length = 163408

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 141    gctccccacacccttccatcatc 163
              |||||||||||||||||||||||
Sbjct: 146200 gctccccacacccttccatcatc 146178



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>emb|CT025522.17| Mouse DNA sequence from clone RP23-332L23 on chromosome 16, complete
            sequence
          Length = 199628

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 141  gctccccacacccttccatcatc 163
            |||||||||||||||||||||||
Sbjct: 2071 gctccccacacccttccatcatc 2049



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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 36      cactcgctggaacaaggcgca 56
               |||||||||||||||||||||
Sbjct: 2259294 cactcgctggaacaaggcgca 2259314



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>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome
          Length = 1267782

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    cgcggcgctaacgagtagcg 184
              ||||||||||||||||||||
Sbjct: 538240 cgcggcgctaacgagtagcg 538221


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,298,971
Number of Sequences: 3902068
Number of extensions: 1298971
Number of successful extensions: 26606
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26565
Number of HSP's gapped (non-prelim): 41
length of query: 253
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 231
effective length of database: 17,147,199,772
effective search space: 3961003147332
effective search space used: 3961003147332
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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