ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17h01 |
|---|---|
| Clone Library Name | barley_pub |
>IF3A_MAIZE (Q9XHR2) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) Length = 962 Score = 91.7 bits (226), Expect = 5e-19 Identities = 44/46 (95%), Positives = 45/46 (97%) Frame = +1 Query: 121 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWHKPL 258 MATFAKPENALKRAEELIHVGQKQ+ALQALHDLITSKRYRSW KPL Sbjct: 1 MATFAKPENALKRAEELIHVGQKQSALQALHDLITSKRYRSWQKPL 46
>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (p114) Length = 987 Score = 83.6 bits (205), Expect = 1e-16 Identities = 40/46 (86%), Positives = 43/46 (93%) Frame = +1 Query: 121 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWHKPL 258 MA FAKPENALKRA+ELI+VGQKQ ALQALHDLITSKRYR+W KPL Sbjct: 1 MANFAKPENALKRADELINVGQKQDALQALHDLITSKRYRAWQKPL 46
>IF3A_TOBAC (Q40554) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (PNLA-35) Length = 958 Score = 81.6 bits (200), Expect = 5e-16 Identities = 40/46 (86%), Positives = 42/46 (91%) Frame = +1 Query: 121 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWHKPL 258 MATFAKPENALKRAEELI VGQKQ ALQALHDLITS+RYR+W K L Sbjct: 1 MATFAKPENALKRAEELITVGQKQEALQALHDLITSRRYRAWQKTL 46
>IF3A_YEAST (P38249) Eukaryotic translation initiation factor 3 110 kDa subunit| (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 964 Score = 57.0 bits (136), Expect = 1e-08 Identities = 27/40 (67%), Positives = 34/40 (85%) Frame = +1 Query: 136 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWHKP 255 +PENA+KRA+ELI VG+KQAALQ+LHD IT++R R W P Sbjct: 7 RPENAIKRADELISVGEKQAALQSLHDFITARRIR-WATP 45
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 55.5 bits (132), Expect = 4e-08 Identities = 24/43 (55%), Positives = 33/43 (76%) Frame = +1 Query: 124 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWHK 252 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+W K Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQK 45
>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin) Length = 1344 Score = 55.5 bits (132), Expect = 4e-08 Identities = 24/43 (55%), Positives = 33/43 (76%) Frame = +1 Query: 124 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWHK 252 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+W K Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQK 45
>IF3A_CAEEL (P34339) Probable eukaryotic translation initiation factor 3| subunit 10 (eIF-3 theta) (eIF3a) (Egg-laying defective protein 45) Length = 1076 Score = 51.2 bits (121), Expect = 7e-07 Identities = 23/39 (58%), Positives = 29/39 (74%) Frame = +1 Query: 130 FAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSW 246 F KPE ALKRAEELI VG++ AL LHD I ++R++ W Sbjct: 6 FQKPEAALKRAEELIQVGKESDALDTLHDTIKARRHKQW 44
>IF3A_SCHPO (O74760) Probable eukaryotic translation initiation factor 3 110| kDa subunit (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 932 Score = 40.0 bits (92), Expect = 0.002 Identities = 19/36 (52%), Positives = 26/36 (72%) Frame = +1 Query: 136 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRS 243 KPEN L+ A+ELI + Q +ALQ+LH+ I KR R+ Sbjct: 7 KPENVLRLADELIALDQHSSALQSLHETIVLKRSRN 42
>PROA_PSYAR (Q4FUZ5) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 430 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 121 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKR 234 M K A RA + G K AAL A+HD++ + + Sbjct: 10 MQNVGKEARAASRALAAANTGDKNAALMAIHDVLKNAK 47
>AROC_STRCO (Q9KXQ4) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 394 Score = 27.7 bits (60), Expect = 8.1 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 9/58 (15%) Frame = +3 Query: 87 SRSAPET-PRPGHGDLR--------EARERAQESGGVDTCWTKAGCAAGAA*SHYIKE 233 +R+AP T PRPGH DL EAR + + +T A A GA Y+KE Sbjct: 105 ARNAPLTRPRPGHADLAGMQKYGFDEARPILERASARETA---ARVALGAVARSYLKE 159
>AROC_STRAW (Q827S0) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 394 Score = 27.7 bits (60), Expect = 8.1 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 9/58 (15%) Frame = +3 Query: 87 SRSAPET-PRPGHGDLR--------EARERAQESGGVDTCWTKAGCAAGAA*SHYIKE 233 +R+AP T PRPGH DL EAR + + +T A A GA Y+KE Sbjct: 105 ARNAPLTRPRPGHADLAGMQKYGFDEARPILERASARETA---ARVALGAVARSYLKE 159 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 21,012,197 Number of Sequences: 219361 Number of extensions: 252414 Number of successful extensions: 914 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 914 length of database: 80,573,946 effective HSP length: 61 effective length of database: 67,192,925 effective search space used: 1612630200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
