ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl17h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_549953.1| Oryza sativa (japonica cultivar-group), mRNA 186 2e-44
2ref|XM_549952.1| Oryza sativa (japonica cultivar-group), mRNA 186 2e-44
3dbj|AK122166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 2e-44
4dbj|AK121302.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 2e-44
5dbj|AK106560.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 2e-44
6dbj|AK073457.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 2e-44
7dbj|AK063986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 2e-44
8emb|AJ437346.1|OSA437346 Oryza sativa mRNA translation initiatio... 163 3e-37
9gb|AY109549.1| Zea mays CL1501_1 mRNA sequence 98 2e-17
10gb|AF073329.1|AF073329 Zea mays eukaryotic translation initiatio... 98 2e-17
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 90 4e-15
12dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic D... 90 4e-15
13gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence 78 2e-11
14ref|NM_117213.2| Arabidopsis thaliana EIF3A AT4G11420 (EIF3A) mR... 58 1e-05
15emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, ... 58 1e-05
16emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosome 4, ... 58 1e-05
17emb|AL050399.1|ATF25E4 Arabidopsis thaliana DNA chromosome 4, BA... 58 1e-05
18gb|AY057516.1| Arabidopsis thaliana AT4g11420/F25E4_40 mRNA sequ... 58 1e-05
19gb|AF291711.1|AF291711 Arabidopsis thaliana initiation factor 3a... 58 1e-05
20emb|X79794.1|NTPNLA35 N.tabacum mRNA pNLA-35 48 0.014
21gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 44 0.21
22gb|DQ282338.1| Uncultured bacterium clone SAF-Int-G9 unnamed int... 42 0.85
23gb|DQ282321.1| Uncultured bacterium clone SAF-Int-E2 unnamed int... 42 0.85
24ref|XM_756391.1| Ustilago maydis 521 hypothetical protein (UM053... 40 3.3
25emb|AL591030.6| Human DNA sequence from clone RP11-35J1 on chrom... 40 3.3
26emb|AL139232.13| Human DNA sequence from clone RP1-237I15 on chr... 40 3.3
27emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.3
28emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete ... 40 3.3
29emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 40 3.3
30emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 3.3
31emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 3.3
32emb|BX640413.1| Bordetella pertussis strain Tohama I, complete g... 40 3.3
33dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 3.3
34dbj|AB003701.1| Cupriavidus necator gene for D-(-)-3-hydroxybuty... 40 3.3
35gb|AC068127.6| Homo sapiens BAC clone RP11-587O9 from 4, complet... 40 3.3
36gb|AC007372.4|AC007372 Homo sapiens chromosome 14 BAC containing... 40 3.3
37emb|AL049837.4|CNS0000F Human chromosome 14 DNA sequence BAC R-9... 40 3.3
38gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 3.3
39gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 3.3 
>ref|XM_549953.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 807

 Score =  186 bits (94), Expect = 2e-44
 Identities = 163/186 (87%)
 Strand = Plus / Plus

                                                                       
Query: 69  tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128
           |||||||||||||||||| ||||||||   ||||||||  |   || |||||||||||||
Sbjct: 106 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 165

                                                                       
Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188
           ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 166 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 225

                                                                       
Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248
           |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 226 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 285

                 
Query: 249 taagcc 254
            |||||
Sbjct: 286 aaagcc 291
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>ref|XM_549952.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3419

 Score =  186 bits (94), Expect = 2e-44
 Identities = 163/186 (87%)
 Strand = Plus / Plus

                                                                       
Query: 69  tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128
           |||||||||||||||||| ||||||||   ||||||||  |   || |||||||||||||
Sbjct: 130 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 189

                                                                       
Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188
           ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 190 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 249

                                                                       
Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248
           |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 250 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 309

                 
Query: 249 taagcc 254
            |||||
Sbjct: 310 aaagcc 315
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>dbj|AK122166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147M02, full
           insert sequence
          Length = 3419

 Score =  186 bits (94), Expect = 2e-44
 Identities = 163/186 (87%)
 Strand = Plus / Plus

                                                                       
Query: 69  tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128
           |||||||||||||||||| ||||||||   ||||||||  |   || |||||||||||||
Sbjct: 130 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 189

                                                                       
Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188
           ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 190 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 249

                                                                       
Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248
           |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 250 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 309

                 
Query: 249 taagcc 254
            |||||
Sbjct: 310 aaagcc 315
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>dbj|AK121302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111A13, full
           insert sequence
          Length = 806

 Score =  186 bits (94), Expect = 2e-44
 Identities = 163/186 (87%)
 Strand = Plus / Plus

                                                                       
Query: 69  tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128
           |||||||||||||||||| ||||||||   ||||||||  |   || |||||||||||||
Sbjct: 105 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 164

                                                                       
Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188
           ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 165 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 224

                                                                       
Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248
           |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 225 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 284

                 
Query: 249 taagcc 254
            |||||
Sbjct: 285 aaagcc 290
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>dbj|AK106560.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-B08, full
           insert sequence
          Length = 2691

 Score =  186 bits (94), Expect = 2e-44
 Identities = 163/186 (87%)
 Strand = Plus / Plus

                                                                       
Query: 69  tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128
           |||||||||||||||||| ||||||||   ||||||||  |   || |||||||||||||
Sbjct: 101 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 160

                                                                       
Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188
           ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 161 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 220

                                                                       
Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248
           |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 221 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 280

                 
Query: 249 taagcc 254
            |||||
Sbjct: 281 aaagcc 286
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>dbj|AK073457.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041I03, full
           insert sequence
          Length = 2175

 Score =  186 bits (94), Expect = 2e-44
 Identities = 163/186 (87%)
 Strand = Plus / Plus

                                                                       
Query: 69  tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128
           |||||||||||||||||| ||||||||   ||||||||  |   || |||||||||||||
Sbjct: 101 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 160

                                                                       
Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188
           ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 161 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 220

                                                                       
Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248
           |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 221 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 280

                 
Query: 249 taagcc 254
            |||||
Sbjct: 281 aaagcc 286
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>dbj|AK063986.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D10, full
           insert sequence
          Length = 1907

 Score =  186 bits (94), Expect = 2e-44
 Identities = 163/186 (87%)
 Strand = Plus / Plus

                                                                       
Query: 69  tctccggcgatctacaggagtagatcggccccggagacccctcgccccggccatggcgac 128
           |||||||||||||||||| ||||||||   ||||||||  |   || |||||||||||||
Sbjct: 100 tctccggcgatctacaggtgtagatcgcttccggagacatccaaccgcggccatggcgac 159

                                                                       
Query: 129 cttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgttggacaaaa 188
           ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 160 cttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgttgggcagaa 219

                                                                       
Query: 189 gcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacagatcatggca 248
           |||||| ||||| |||||| | ||||||||||| || ||||| |||||||| ||||||||
Sbjct: 220 gcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacaggtcatggca 279

                 
Query: 249 taagcc 254
            |||||
Sbjct: 280 aaagcc 285
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>emb|AJ437346.1|OSA437346 Oryza sativa mRNA translation initiation factor 3 large subunit
           (eIF3a gene)
          Length = 3445

 Score =  163 bits (82), Expect = 3e-37
 Identities = 121/134 (90%)
 Strand = Plus / Plus

                                                                       
Query: 121 atggcgaccttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgtt 180
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 85  atggcgaccttcgcgaaacctgagaacgcgctcaagagagcggaggagttgatacatgtt 144

                                                                       
Query: 181 ggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacaga 240
           || || |||||||| ||||| |||||| | ||||||||||| || ||||| |||||||| 
Sbjct: 145 gggcagaagcaggcagcgctacaggcgttacatgatctcatcacttcaaaaagatacagg 204

                         
Query: 241 tcatggcataagcc 254
           |||||||| |||||
Sbjct: 205 tcatggcaaaagcc 218
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>gb|AY109549.1| Zea mays CL1501_1 mRNA sequence
          Length = 3314

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 115/137 (83%)
 Strand = Plus / Plus

                                                                       
Query: 121 atggcgaccttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgtt 180
           |||||||| |||||||| || ||||||||||| |||||||| || || || || ||||||
Sbjct: 159 atggcgactttcgcgaaacctgagaacgcgctgaagagagccgaagaattaatccatgtt 218

                                                                       
Query: 181 ggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacaga 240
           || ||||||||| | || ||||||||  | |||||||||||||| || || || ||||| 
Sbjct: 219 ggtcaaaagcagtcagccctgcaggctttacatgatctcattacctcgaaaaggtacagg 278

                            
Query: 241 tcatggcataagcctct 257
           |||||||| ||||||||
Sbjct: 279 tcatggcagaagcctct 295
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>gb|AF073329.1|AF073329 Zea mays eukaryotic translation initiation factor 3 large subunit
           mRNA, complete cds
          Length = 3293

 Score = 97.6 bits (49), Expect = 2e-17
 Identities = 115/137 (83%)
 Strand = Plus / Plus

                                                                       
Query: 121 atggcgaccttcgcgaagcccgagaacgcgctcaagagagcggaggagttgatacatgtt 180
           |||||||| |||||||| || ||||||||||| |||||||| || || || || ||||||
Sbjct: 159 atggcgactttcgcgaaacctgagaacgcgctgaagagagccgaagaattaatccatgtt 218

                                                                       
Query: 181 ggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagatacaga 240
           || ||||||||| | || ||||||||  | |||||||||||||| || || || ||||| 
Sbjct: 219 ggtcaaaagcagtcagccctgcaggctttacatgatctcattacctcgaaaaggtacagg 278

                            
Query: 241 tcatggcataagcctct 257
           |||||||| ||||||||
Sbjct: 279 tcatggcagaagcctct 295
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                           
Query: 166     gagttgatacatgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattaca 225
               ||||||||||||||||| || |||||||| ||||| |||||| | ||||||||||| || 
Sbjct: 1177684 gagttgatacatgttgggcagaagcaggcagcgctacaggcgttacatgatctcatcact 1177625

                                            
Query: 226     tcaaagagatacagatcatggcataagcc 254
               ||||| |||||||| |||||||| |||||
Sbjct: 1177624 tcaaaaagatacaggtcatggcaaaagcc 1177596



 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                                  
Query: 116     cggccatggcgaccttcgcgaagcccgagaacgcgctcaagagagcggagg 166
               |||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 1177980 cggccatggcgaccttcgcgaaacctgagaacgcgctcaagagagcggagg 1177930
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>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684C01
          Length = 78600

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                         
Query: 166   gagttgatacatgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattaca 225
             ||||||||||||||||| || |||||||| ||||| |||||| | ||||||||||| || 
Sbjct: 31987 gagttgatacatgttgggcagaagcaggcagcgctacaggcgttacatgatctcatcact 31928

                                          
Query: 226   tcaaagagatacagatcatggcataagcc 254
             ||||| |||||||| |||||||| |||||
Sbjct: 31927 tcaaaaagatacaggtcatggcaaaagcc 31899



 Score = 85.7 bits (43), Expect = 6e-14
 Identities = 49/51 (96%)
 Strand = Plus / Minus

                                                                
Query: 116   cggccatggcgaccttcgcgaagcccgagaacgcgctcaagagagcggagg 166
             |||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 32283 cggccatggcgaccttcgcgaaacctgagaacgcgctcaagagagcggagg 32233
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>gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence
          Length = 187659

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                          
Query: 175    catgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagaga 234
              |||||||| ||||||||||| || ||||||||  | |||||||||||||| ||||| || 
Sbjct: 119417 catgttgggcaaaagcaggcagcactgcaggctttacatgatctcattacctcaaaaagg 119358

                                     
Query: 235    tacagatcatggcataagcctct 257
              ||||| |||||||| ||||||||
Sbjct: 119357 tacaggtcatggcagaagcctct 119335



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                         
Query: 119    ccatggcgaccttcgcgaagcccgagaacgcgctcaagagagc 161
              |||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 121785 ccatggcgactttcgcgaagcctgagaacgcgctcaagagagc 121743
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>ref|NM_117213.2| Arabidopsis thaliana EIF3A AT4G11420 (EIF3A) mRNA, complete cds
          Length = 3449

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 176 atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235
           |||||||||| || || | ||| || |||||||| |||||||||||||| || |||||||
Sbjct: 183 atgttggacagaaacaagatgctcttcaggcgcttcatgatctcattacttccaagagat 242

                
Query: 236 acaga 240
           |||||
Sbjct: 243 acaga 247
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>emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32
          Length = 198788

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                        
Query: 176  atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235
            |||||||||| || || | ||| || |||||||| |||||||||||||| || |||||||
Sbjct: 2828 atgttggacagaaacaagatgctcttcaggcgcttcatgatctcattacttccaagagat 2769

                 
Query: 236  acaga 240
            |||||
Sbjct: 2768 acaga 2764
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>emb|AL161531.2|ATCHRIV31 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 31
          Length = 198301

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                          
Query: 176    atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235
              |||||||||| || || | ||| || |||||||| |||||||||||||| || |||||||
Sbjct: 196129 atgttggacagaaacaagatgctcttcaggcgcttcatgatctcattacttccaagagat 196070

                   
Query: 236    acaga 240
              |||||
Sbjct: 196069 acaga 196065
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>emb|AL050399.1|ATF25E4 Arabidopsis thaliana DNA chromosome 4, BAC clone F25E4 (ESSA project)
          Length = 80019

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Minus

                                                                         
Query: 176   atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235
             |||||||||| || || | ||| || |||||||| |||||||||||||| || |||||||
Sbjct: 24179 atgttggacagaaacaagatgctcttcaggcgcttcatgatctcattacttccaagagat 24120

                  
Query: 236   acaga 240
             |||||
Sbjct: 24119 acaga 24115
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>gb|AY057516.1| Arabidopsis thaliana AT4g11420/F25E4_40 mRNA sequence
          Length = 2033

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 176 atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235
           |||||||||| || || | ||| || |||||||| |||||||||||||| || |||||||
Sbjct: 160 atgttggacagaaacaagatgctcttcaggcgcttcatgatctcattacttccaagagat 219

                
Query: 236 acaga 240
           |||||
Sbjct: 220 acaga 224
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>gb|AF291711.1|AF291711 Arabidopsis thaliana initiation factor 3a mRNA, complete cds
          Length = 3310

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 176 atgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagat 235
           |||||||||| || || | ||| || |||||||| |||||||||||||| || |||||||
Sbjct: 134 atgttggacagaaacaagatgctcttcaggcgcttcatgatctcattacttccaagagat 193

                
Query: 236 acaga 240
           |||||
Sbjct: 194 acaga 198
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>emb|X79794.1|NTPNLA35 N.tabacum mRNA pNLA-35
          Length = 3256

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 60/72 (83%)
 Strand = Plus / Plus

                                                                       
Query: 177 tgttggacaaaagcaggctgcgctgcaggcgctgcatgatctcattacatcaaagagata 236
           ||||||||||||||| |  |||||||| || || |||||||| ||||| |||| ||| ||
Sbjct: 100 tgttggacaaaagcaagaagcgctgcaagcacttcatgatcttattacttcaaggaggta 159

                       
Query: 237 cagatcatggca 248
            ||| |||||||
Sbjct: 160 tagagcatggca 171
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 44.1 bits (22), Expect = 0.21
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 185     aaaagcaggctgcgctgcaggcgctg 210
               |||||||||||| |||||||||||||
Sbjct: 3187411 aaaagcaggctgtgctgcaggcgctg 3187436
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>gb|DQ282338.1| Uncultured bacterium clone SAF-Int-G9 unnamed integron integrase
           gene, partial cds
          Length = 489

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 143 agaacgcgctcaagagagcgg 163
           |||||||||||||||||||||
Sbjct: 314 agaacgcgctcaagagagcgg 334
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>gb|DQ282321.1| Uncultured bacterium clone SAF-Int-E2 unnamed integron integrase
           gene, partial cds
          Length = 489

 Score = 42.1 bits (21), Expect = 0.85
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 143 agaacgcgctcaagagagcgg 163
           |||||||||||||||||||||
Sbjct: 314 agaacgcgctcaagagagcgg 334
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>ref|XM_756391.1| Ustilago maydis 521 hypothetical protein (UM05337.1) partial mRNA
          Length = 3624

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 189  gcaggctgcgctgcaggcgctgca 212
            |||||| |||||||||||||||||
Sbjct: 2705 gcaggcggcgctgcaggcgctgca 2682
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>emb|AL591030.6| Human DNA sequence from clone RP11-35J1 on chromosome 6 Contains putative
              novel gene, complete sequence
          Length = 152361

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    tcattacatcaaagagatac 237
              ||||||||||||||||||||
Sbjct: 115848 tcattacatcaaagagatac 115829
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>emb|AL139232.13| Human DNA sequence from clone RP1-237I15 on chromosome 6 Contains a novel
              gene, the 5' end of the gene for flavohemoprotein B5+B5R
              and a CpG island, complete sequence
          Length = 137659

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 218    tcattacatcaaagagatac 237
              ||||||||||||||||||||
Sbjct: 131592 tcattacatcaaagagatac 131573
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>emb|BX640446.1| Bordetella bronchiseptica strain RB50, complete genome; segment 10/16
          Length = 348642

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    cgctgcaggcgctgcatgat 216
              ||||||||||||||||||||
Sbjct: 175710 cgctgcaggcgctgcatgat 175691
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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 188  agcaggctgcgctgcaggcgctgc 211
            ||||||| ||||||||||||||||
Sbjct: 5659 agcaggcggcgctgcaggcgctgc 5682
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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 188    agcaggctgcgctgcaggcgctgc 211
              ||||||| ||||||||||||||||
Sbjct: 269533 agcaggcggcgctgcaggcgctgc 269556
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    cgctgcaggcgctgcatgat 216
              ||||||||||||||||||||
Sbjct: 341436 cgctgcaggcgctgcatgat 341455
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 188    agcaggctgcgctgcaggcgctgc 211
              ||||||| ||||||||||||||||
Sbjct: 281867 agcaggcggcgctgcaggcgctgc 281844
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>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12
          Length = 349028

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 197    cgctgcaggcgctgcatgat 216
              ||||||||||||||||||||
Sbjct: 242868 cgctgcaggcgctgcatgat 242887
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     gcgctgcaggcgctgcatga 215
               ||||||||||||||||||||
Sbjct: 4443423 gcgctgcaggcgctgcatga 4443442
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>dbj|AB003701.1| Cupriavidus necator gene for D-(-)-3-hydroxybutyrate-oligomer
            hydrolase, complete cds
          Length = 3173

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 196  gcgctgcaggcgctgcatga 215
            ||||||||||||||||||||
Sbjct: 1576 gcgctgcaggcgctgcatga 1595
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>gb|AC068127.6| Homo sapiens BAC clone RP11-587O9 from 4, complete sequence
          Length = 203523

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   tcattacatcaaagagatac 237
             ||||||||||||||||||||
Sbjct: 18374 tcattacatcaaagagatac 18355
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>gb|AC007372.4|AC007372 Homo sapiens chromosome 14 BAC containing gene for type 2 iodothyronine
              deiodinase (DIO2) gene, complete CDS, complete sequence
          Length = 154796

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    tgcatgatctcattacatca 228
              ||||||||||||||||||||
Sbjct: 153418 tgcatgatctcattacatca 153399
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>emb|AL049837.4|CNS0000F Human chromosome 14 DNA sequence BAC R-959A22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 168677

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   tgcatgatctcattacatca 228
             ||||||||||||||||||||
Sbjct: 21734 tgcatgatctcattacatca 21753
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 196     gcgctgcaggcgctgcatga 215
               ||||||||||||||||||||
Sbjct: 4445950 gcgctgcaggcgctgcatga 4445969
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 129     cttcgcgaagcccgagaacgcgctcaag 156
               |||||||| |||||||||||||| ||||
Sbjct: 2949534 cttcgcgatgcccgagaacgcgcccaag 2949561


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,236,385
Number of Sequences: 3902068
Number of extensions: 1236385
Number of successful extensions: 23310
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23074
Number of HSP's gapped (non-prelim): 236
length of query: 258
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 236
effective length of database: 17,147,199,772
effective search space: 4046739146192
effective search space used: 4046739146192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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