>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)|
          Length = 859

 Score = 66.2 bits (160), Expect = 2e-11
 Identities = 29/33 (87%), Positives = 29/33 (87%)
 Frame = +1

Query: 193 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 291
           LY ELWHACAGPLVTVPR  D VFYFPQGHIEQ
Sbjct: 58  LYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQ 90

>ARFK_ARATH (Q9ZPY6) Auxin response factor 11|
          Length = 601

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 28/38 (73%), Positives = 30/38 (78%)
 Frame = +1

Query: 178 SAGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 291
           S  D LY ELW ACAGPLV VPR G+ VFYFPQGH+EQ
Sbjct: 13  SNDDELYTELWKACAGPLVEVPRYGERVFYFPQGHMEQ 50

>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score = 61.2 bits (147), Expect = 6e-10
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = +1

Query: 187 DPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 291
           D L  ELWHACAGPLVT+PR G+ V+YFP+GH+EQ
Sbjct: 17  DALCRELWHACAGPLVTLPREGERVYYFPEGHMEQ 51

>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)|
          Length = 608

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 25/38 (65%), Positives = 31/38 (81%)
 Frame = +1

Query: 178 SAGDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 291
           SAG  +  ELWHACAGPL+++P+ G LV YFPQGH+EQ
Sbjct: 46  SAGGGVCLELWHACAGPLISLPKRGSLVLYFPQGHLEQ 83

>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)|
          Length = 1086

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 24/34 (70%), Positives = 28/34 (82%)
 Frame = +1

Query: 190 PLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 291
           P+  +LWHACAGPLV++P VG LV YFPQGH EQ
Sbjct: 19  PINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQ 52

>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 25/35 (71%), Positives = 27/35 (77%)
 Frame = +1

Query: 187 DPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 291
           D LY ELW  CAGPLV VPR  + VFYFPQGH+EQ
Sbjct: 20  DQLYTELWKVCAGPLVEVPRAQERVFYFPQGHMEQ 54

>ARFD_ARATH (Q9ZTX9) Auxin response factor 4|
          Length = 788

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 22/33 (66%), Positives = 28/33 (84%)
 Frame = +1

Query: 193 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 291
           +Y ELWHACAGPL  +P+ G++V YFPQGH+EQ
Sbjct: 62  IYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ 94

>ARFI_ARATH (Q9XED8) Auxin response factor 9|
          Length = 638

 Score = 58.5 bits (140), Expect = 4e-09
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +1

Query: 184 GDPLYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 291
           G+ LYDELW  CAGPLV VP+  + V+YFPQGH+EQ
Sbjct: 6   GEYLYDELWKLCAGPLVDVPQAQERVYYFPQGHMEQ 41

>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)|
           (Auxin-responsive protein IAA24)
          Length = 902

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = +1

Query: 202 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 291
           ELWHACAGPLV +P+VG LV+YF QGH EQ
Sbjct: 54  ELWHACAGPLVCLPQVGSLVYYFSQGHSEQ 83

>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +1

Query: 193 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 291
           L  ELWHACAGPLV++P VG  V YFPQGH EQ
Sbjct: 20  LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQ 52

>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 55.5 bits (132), Expect = 3e-08
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +1

Query: 202 ELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 291
           ELWHACAGPL+++P  G LV YFPQGH EQ
Sbjct: 24  ELWHACAGPLISLPPAGSLVVYFPQGHSEQ 53

>ARFW_ARATH (Q9LP07) Putative auxin response factor 23|
          Length = 222

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 19/32 (59%), Positives = 27/32 (84%)
 Frame = +1

Query: 193 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIE 288
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIE 55

>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14|
          Length = 605

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 19/32 (59%), Positives = 27/32 (84%)
 Frame = +1

Query: 193 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIE 288
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIE 55

>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 23/33 (69%), Positives = 25/33 (75%)
 Frame = +1

Query: 193 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIEQ 291
           L  ELWHACAGPLV++P  G  V YFPQGH EQ
Sbjct: 19  LNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQ 51

>ARFL_ARATH (Q9XID4) Putative auxin response factor 12|
          Length = 593

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 19/32 (59%), Positives = 27/32 (84%)
 Frame = +1

Query: 193 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIE 288
           +Y++LW  CAGPL  +P++G+ V+YFPQGHIE
Sbjct: 24  VYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIE 55

>ARFM_ARATH (Q9FX25) Putative auxin response factor 13|
          Length = 623

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 19/32 (59%), Positives = 27/32 (84%)
 Frame = +1

Query: 193 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIE 288
           +Y++LW+ CAGPL  +P+ G+ V+YFPQGHIE
Sbjct: 24  MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIE 55

>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15|
          Length = 593

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 18/32 (56%), Positives = 27/32 (84%)
 Frame = +1

Query: 193 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIE 288
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKVYYFPQGNIE 55

>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21|
          Length = 606

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 18/32 (56%), Positives = 27/32 (84%)
 Frame = +1

Query: 193 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIE 288
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIE 55

>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20|
          Length = 606

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 18/32 (56%), Positives = 27/32 (84%)
 Frame = +1

Query: 193 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIE 288
           +Y++LW  CAGPL  +P++G+ V+YFPQG+IE
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIE 55

>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22|
          Length = 598

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 17/32 (53%), Positives = 27/32 (84%)
 Frame = +1

Query: 193 LYDELWHACAGPLVTVPRVGDLVFYFPQGHIE 288
           +Y++LW  CAGPL  +P++G+ ++YFPQG+IE
Sbjct: 24  MYEQLWKLCAGPLCDIPKLGEKIYYFPQGNIE 55

>ARFP_ARATH (Q93YR9) Auxin response factor 16|
          Length = 670

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 18/29 (62%), Positives = 22/29 (75%)
 Frame = +1

Query: 202 ELWHACAGPLVTVPRVGDLVFYFPQGHIE 288
           +LWHACAG +V +P +   VFYFPQGH E
Sbjct: 19  QLWHACAGGMVRMPPMNSKVFYFPQGHAE 47

>ARFJ_ARATH (Q9SKN5) Auxin response factor 10|
          Length = 693

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 17/29 (58%), Positives = 21/29 (72%)
 Frame = +1

Query: 202 ELWHACAGPLVTVPRVGDLVFYFPQGHIE 288
           +LWHACAG +V +P +   VFYF QGH E
Sbjct: 10  QLWHACAGSMVQIPSLNSTVFYFAQGHTE 38

>ARFQ_ARATH (Q84WU6) Auxin response factor 17|
          Length = 585

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = +1

Query: 178 SAGDPLYDE----LWHACAGPLVTVPRVGDLVFYFPQGHIE 288
           +AGD  + E    +W ACAG  V +P +   V+YFPQGH+E
Sbjct: 7   TAGDINHREVDPTIWRACAGASVQIPVLHSRVYYFPQGHVE 47

>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2304

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +1

Query: 238  VPRVGDLVFYFPQGH 282
            VP++GD V YFPQGH
Sbjct: 959  VPQMGDEVIYFPQGH 973

>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)|
            [Includes: ATP-dependent asparagine adenylase (AsnA)
            (Asparagine activase); ATP-dependent glutamine adenylase
            (GlnA) (Glutamine activase); ATP-dependent tyrosine
            adenylase (TyrA) (Ty
          Length = 6486

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 235  TVPRVGDLVFYFPQGHIE 288
            T+ R GD+V Y P GHIE
Sbjct: 1871 TMYRTGDMVRYLPDGHIE 1888


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,219,368
Number of Sequences: 219361
Number of extensions: 140235
Number of successful extensions: 588
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)