ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17g12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_189992.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2481 Score = 168 bits (85), Expect = 6e-39 Identities = 109/117 (93%) Strand = Plus / Plus Query: 176 cctccgcaggggatccgctctacgacgagctctggcacgcctgcgccggcccgctcgtca 235 ||||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||| Sbjct: 29 cctccacaggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtca 88 Query: 236 ccgtcccgcgcgtcggggacctcgtcttctacttcccgcaggggcacatcgagcagg 292 |||| ||||| || || |||||||||||||||||||||||||||||||||||||||| Sbjct: 89 ccgtgccgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcagg 145
>dbj|AK072309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022C23, full insert sequence Length = 3151 Score = 168 bits (85), Expect = 6e-39 Identities = 109/117 (93%) Strand = Plus / Plus Query: 176 cctccgcaggggatccgctctacgacgagctctggcacgcctgcgccggcccgctcgtca 235 ||||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||| Sbjct: 251 cctccacaggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtca 310 Query: 236 ccgtcccgcgcgtcggggacctcgtcttctacttcccgcaggggcacatcgagcagg 292 |||| ||||| || || |||||||||||||||||||||||||||||||||||||||| Sbjct: 311 ccgtgccgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcagg 367
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 167 bits (84), Expect = 2e-38 Identities = 105/112 (93%) Strand = Plus / Plus Query: 181 gcaggggatccgctctacgacgagctctggcacgcctgcgccggcccgctcgtcaccgtc 240 |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| Sbjct: 40688392 gcaggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtcaccgtg 40688451 Query: 241 ccgcgcgtcggggacctcgtcttctacttcccgcaggggcacatcgagcagg 292 ||||| || || |||||||||||||||||||||||||||||||||||||||| Sbjct: 40688452 ccgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcagg 40688503 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagca 131 |||||||||||||||||||| Sbjct: 40647308 cgccgcgccgccggccagca 40647289
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0093F16 Length = 160925 Score = 167 bits (84), Expect = 2e-38 Identities = 105/112 (93%) Strand = Plus / Plus Query: 181 gcaggggatccgctctacgacgagctctggcacgcctgcgccggcccgctcgtcaccgtc 240 |||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| Sbjct: 130370 gcaggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtcaccgtg 130429 Query: 241 ccgcgcgtcggggacctcgtcttctacttcccgcaggggcacatcgagcagg 292 ||||| || || |||||||||||||||||||||||||||||||||||||||| Sbjct: 130430 ccgcgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcagg 130481 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagca 131 |||||||||||||||||||| Sbjct: 89286 cgccgcgccgccggccagca 89267
>dbj|AB071293.1| Oryza sativa OsARF2 mRNA for auxin response factor 2, partial cds Length = 2376 Score = 161 bits (81), Expect = 2e-36 Identities = 102/109 (93%) Strand = Plus / Plus Query: 184 ggggatccgctctacgacgagctctggcacgcctgcgccggcccgctcgtcaccgtcccg 243 ||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||| Sbjct: 1 ggggatccgctctacgacgagctgtggcacgcctgcgcggggccgctcgtcaccgtgccg 60 Query: 244 cgcgtcggggacctcgtcttctacttcccgcaggggcacatcgagcagg 292 || || || |||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cgggtgggcgacctcgtcttctacttcccgcaggggcacatcgagcagg 109
>gb|AC150702.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1356E08, complete sequence Length = 136853 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 262 ttctacttcccgcaggggcacatcgagcagg 292 ||||||||||||||||||||||||||||||| Sbjct: 133848 ttctacttcccgcaggggcacatcgagcagg 133818
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0056I10, complete sequence Length = 158833 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 262 ttctacttcccgcaggggcacatcgagcagg 292 ||||||||||||||||||||||||||||||| Sbjct: 10617 ttctacttcccgcaggggcacatcgagcagg 10587
>gb|AC109645.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0410D09, complete sequence Length = 43883 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 262 ttctacttcccgcaggggcacatcgagcagg 292 ||||||||||||||||||||||||||||||| Sbjct: 42511 ttctacttcccgcaggggcacatcgagcagg 42481
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 262 ttctacttcccgcaggggcacatcgagcagg 292 ||||||||||||||||||||||||||||||| Sbjct: 18275252 ttctacttcccgcaggggcacatcgagcagg 18275222
>gb|AF140228.2| Oryza sativa (indica cultivar-group) putative auxin response factor 1 mRNA, partial cds Length = 2574 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 262 ttctacttcccgcaggggcacatcgagcagg 292 ||||||||||||||||||||||||||||||| Sbjct: 178 ttctacttcccgcaggggcacatcgagcagg 208
>emb|AJ306306.1|OSA306306 Oryza sativa subsp. japonica mRNA for auxin response factor 1 (arf1 gene) Length = 2511 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 262 ttctacttcccgcaggggcacatcgagcagg 292 ||||||||||||||||||||||||||||||| Sbjct: 130 ttctacttcccgcaggggcacatcgagcagg 160
>dbj|AK065936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A03, full insert sequence Length = 3338 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Plus Query: 262 ttctacttcccgcaggggcacatcgagcagg 292 ||||||||||||||||||||||||||||||| Sbjct: 412 ttctacttcccgcaggggcacatcgagcagg 442
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 61.9 bits (31), Expect = 1e-06 Identities = 31/31 (100%) Strand = Plus / Minus Query: 262 ttctacttcccgcaggggcacatcgagcagg 292 ||||||||||||||||||||||||||||||| Sbjct: 18434532 ttctacttcccgcaggggcacatcgagcagg 18434502
>emb|AJ716227.1| Brassica napus mRNA for putative auxin response factor (ARF2 gene) Length = 2547 Score = 60.0 bits (30), Expect = 4e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 259 gtcttctacttcccgcaggggcacatcgagcagg 292 |||||||||||||| ||||||||||||||||||| Sbjct: 223 gtcttctacttccctcaggggcacatcgagcagg 256
>ref|XM_474307.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2457 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 202 gagctctggcacgcctgcgccggcccgctcgtc 234 ||||| ||||||||||||||||||||||||||| Sbjct: 91 gagctatggcacgcctgcgccggcccgctcgtc 123
>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17, complete sequence Length = 159894 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 202 gagctctggcacgcctgcgccggcccgctcgtc 234 ||||| ||||||||||||||||||||||||||| Sbjct: 43419 gagctatggcacgcctgcgccggcccgctcgtc 43387
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 202 gagctctggcacgcctgcgccggcccgctcgtc 234 ||||| ||||||||||||||||||||||||||| Sbjct: 34319016 gagctatggcacgcctgcgccggcccgctcgtc 34318984
>dbj|AK071455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093B04, full insert sequence Length = 3262 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 202 gagctctggcacgcctgcgccggcccgctcgtc 234 ||||| ||||||||||||||||||||||||||| Sbjct: 426 gagctatggcacgcctgcgccggcccgctcgtc 458
>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete sequence Length = 95419 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 202 gagctctggcacgcctgcgccggcccgctcgtc 234 ||||| ||||||||||||||||||||||||||| Sbjct: 91307 gagctatggcacgcctgcgccggcccgctcgtc 91275
>emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0322F07, complete sequence Length = 100419 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 202 gagctctggcacgcctgcgccggcccgctcgtc 234 ||||| ||||||||||||||||||||||||||| Sbjct: 4172 gagctatggcacgcctgcgccggcccgctcgtc 4140
>dbj|AB071298.1| Oryza sativa OsARF8 mRNA for auxin response factor 8, partial cds Length = 2388 Score = 58.0 bits (29), Expect = 2e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 202 gagctctggcacgcctgcgccggcccgctcgtc 234 ||||| ||||||||||||||||||||||||||| Sbjct: 22 gagctatggcacgcctgcgccggcccgctcgtc 54
>gb|DQ013802.1| Phyllostachys praecox ARF1 mRNA, partial cds Length = 1108 Score = 54.0 bits (27), Expect = 3e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 262 ttctacttcccgcaggggcacatcgagcagg 292 ||||||||||| ||||||||||||||||||| Sbjct: 154 ttctacttccctcaggggcacatcgagcagg 184
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 259 gtcttctacttcccgcaggggcacatcgagcagg 292 ||||||||| |||||||||| ||||||||||||| Sbjct: 17618213 gtcttctacctcccgcagggccacatcgagcagg 17618180
>dbj|AK067061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091D19, full insert sequence Length = 3265 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 259 gtcttctacttcccgcaggggcacatcgagcagg 292 ||||||||| |||||||||| ||||||||||||| Sbjct: 440 gtcttctacctcccgcagggccacatcgagcagg 473
>dbj|AK065254.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J11, full insert sequence Length = 3100 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 259 gtcttctacttcccgcaggggcacatcgagcagg 292 ||||||||| |||||||||| ||||||||||||| Sbjct: 291 gtcttctacctcccgcagggccacatcgagcagg 324
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 259 gtcttctacttcccgcaggggcacatcgagcagg 292 ||||||||| |||||||||| ||||||||||||| Sbjct: 17572584 gtcttctacctcccgcagggccacatcgagcagg 17572551
>emb|AL935066.2|CNS08CCI Oryza sativa chromosome 12, . BAC OSJNBa0005P03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162200 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 259 gtcttctacttcccgcaggggcacatcgagcagg 292 ||||||||| |||||||||| ||||||||||||| Sbjct: 110549 gtcttctacctcccgcagggccacatcgagcagg 110516
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 202 gagctctggcacgcctgcgccggcccgctcgtc 234 |||||||||||||||||| || ||||||||||| Sbjct: 28541929 gagctctggcacgcctgctccagcccgctcgtc 28541961 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Minus Query: 202 gagctctggcacgcctgcgccggcccgctcgt 233 ||||| |||||||| ||||||||||||||||| Sbjct: 2214437 gagctgtggcacgcgtgcgccggcccgctcgt 2214406
>dbj|AP005859.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1053A04 Length = 144321 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 202 gagctctggcacgcctgcgccggcccgctcgtc 234 |||||||||||||||||| || ||||||||||| Sbjct: 5942 gagctctggcacgcctgctccagcccgctcgtc 5974
>dbj|AP004786.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017H11 Length = 158374 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 202 gagctctggcacgcctgcgccggcccgctcgtc 234 |||||||||||||||||| || ||||||||||| Sbjct: 110770 gagctctggcacgcctgctccagcccgctcgtc 110802
>ref|XM_464101.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3420 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Plus Query: 202 gagctctggcacgcctgcgccggcccgctcgt 233 ||||| |||||||| ||||||||||||||||| Sbjct: 121 gagctgtggcacgcgtgcgccggcccgctcgt 152
>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_E07 Length = 113187 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Minus Query: 202 gagctctggcacgcctgcgccggcccgctcgt 233 ||||| |||||||| ||||||||||||||||| Sbjct: 1386 gagctgtggcacgcgtgcgccggcccgctcgt 1355
>dbj|AP005294.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1679_B08 Length = 142529 Score = 48.1 bits (24), Expect = 0.016 Identities = 30/32 (93%) Strand = Plus / Minus Query: 202 gagctctggcacgcctgcgccggcccgctcgt 233 ||||| |||||||| ||||||||||||||||| Sbjct: 129130 gagctgtggcacgcgtgcgccggcccgctcgt 129099
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 111 gcgccgcgccgccggccagcag 132 |||||||||||||||||||||| Sbjct: 266229 gcgccgcgccgccggccagcag 266250 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagca 131 |||||||||||||||||||| Sbjct: 3406902 cgccgcgccgccggccagca 3406883
>ref|XM_450354.1| Oryza sativa (japonica cultivar-group), mRNA Length = 345 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 126 ccagcagaagcagcagatgccgccg 150 |||||||||| |||||||||||||| Sbjct: 79 ccagcagaagaagcagatgccgccg 103
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagcag 132 ||||||||||||||||||||| Sbjct: 350796 cgccgcgccgccggccagcag 350776
>gb|AY221127.1| Drosophila simulans thyroid hormone receptor-associated protein TRAP100 (Trap100) gene, partial cds Length = 1989 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagcagaagc 136 ||||||||||||||| ||||||||| Sbjct: 794 cgccgcgccgccggctagcagaagc 770
>ref|XM_809630.1| Trypanosoma cruzi strain CL Brener protein transport protein sec13 (Tc00.1047053506525.20) partial mRNA Length = 1131 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 cagcagaagcagcagatgccgccgc 151 |||||| |||||||||||||||||| Sbjct: 58 cagcagcagcagcagatgccgccgc 82
>ref|XM_815839.1| Trypanosoma cruzi strain CL Brener protein transport protein sec13 (Tc00.1047053511283.20) partial mRNA Length = 1131 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 cagcagaagcagcagatgccgccgc 151 |||||| |||||||||||||||||| Sbjct: 58 cagcagcagcagcagatgccgccgc 82
>gb|AC127734.4| Rattus norvegicus 18 BAC CH230-372C24 (Children's Hospital Oakland Research Institute) complete sequence Length = 166134 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 140 agatgccgccgcccgccatggcgac 164 |||| |||||||||||||||||||| Sbjct: 163185 agatcccgccgcccgccatggcgac 163161
>gb|AC159939.3| Loxodonta africana clone VMRC15-235M14, complete sequence Length = 144550 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagcag 132 ||||||||||||||||||||| Sbjct: 33878 cgccgcgccgccggccagcag 33858
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 126 ccagcagaagcagcagatgccgccg 150 |||||||||| |||||||||||||| Sbjct: 4362718 ccagcagaagaagcagatgccgccg 4362742 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ctcctcgcgcagcagcagct 100 |||||||||||||||||||| Sbjct: 20438008 ctcctcgcgcagcagcagct 20438027 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gccgccgcccgccatggcga 163 |||||||||||||||||||| Sbjct: 15395283 gccgccgcccgccatggcga 15395302
>gb|AF340166.1|AF340166 Streptomyces verticillus nonribosomal peptide synthetase 3-2 and amino acid hydroxylase genes, complete cds; nonribosomal peptide synthetase 1 gene, partial cds; and unknown gene Length = 12277 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Minus Query: 237 cgtcccgcgcgtcggggacctcgtc 261 |||||||||||||||| |||||||| Sbjct: 4496 cgtcccgcgcgtcgggcacctcgtc 4472
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagcag 132 ||||||||||||||||||||| Sbjct: 5537655 cgccgcgccgccggccagcag 5537635
>gb|AE004634.1| Pseudomonas aeruginosa PAO1, section 195 of 529 of the complete genome Length = 10464 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagcag 132 ||||||||||||||||||||| Sbjct: 5993 cgccgcgccgccggccagcag 5973
>ref|NM_053905.1| Rattus norvegicus lamin B1 (Lmnb1), mRNA Length = 2154 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 140 agatgccgccgcccgccatggcgac 164 |||| |||||||||||||||||||| Sbjct: 310 agatcccgccgcccgccatggcgac 334
>ref|XM_579583.1| PREDICTED: Rattus norvegicus hypothetical gene supported by NM_053905 (LOC497722), mRNA Length = 2148 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 140 agatgccgccgcccgccatggcgac 164 |||| |||||||||||||||||||| Sbjct: 308 agatcccgccgcccgccatggcgac 332
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 ccgccggccagcagaagcagc 139 ||||||||||||||||||||| Sbjct: 2552936 ccgccggccagcagaagcagc 2552956
>dbj|AP006441.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1279D09 Length = 134793 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 126 ccagcagaagcagcagatgccgccg 150 |||||||||| |||||||||||||| Sbjct: 65536 ccagcagaagaagcagatgccgccg 65560
>gb|U72353.1|RNU72353 Rattus norvegicus lamin B1 mRNA, complete cds Length = 2154 Score = 42.1 bits (21), Expect = 0.97 Identities = 24/25 (96%) Strand = Plus / Plus Query: 140 agatgccgccgcccgccatggcgac 164 |||| |||||||||||||||||||| Sbjct: 310 agatcccgccgcccgccatggcgac 334
>gb|BC078178.1| Homo sapiens lamin B1, mRNA (cDNA clone IMAGE:6503792), partial cds Length = 1281 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 271 ccgccgcccgccatggcgac 290
>ref|NM_196315.1| Oryza sativa (japonica cultivar-group) putative cucumisin-like serine protease (OSJNBa0011L09.20), mRNA Length = 2322 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 cctcgcgccgcgccgccggc 126 |||||||||||||||||||| Sbjct: 1409 cctcgcgccgcgccgccggc 1428
>ref|XM_463687.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2031 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagca 131 |||||||||||||||||||| Sbjct: 169 cgccgcgccgccggccagca 150
>gb|BC103723.1| Homo sapiens lamin B1, mRNA (cDNA clone MGC:111419 IMAGE:6146212), complete cds Length = 2201 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 370 ccgccgcccgccatggcgac 389
>gb|AC124143.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0053D02, complete sequence Length = 157106 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 cgagctctggcacgcctgcgccgg 224 |||||| ||||||||||||||||| Sbjct: 44804 cgagctgtggcacgcctgcgccgg 44827
>ref|NM_005573.2| Homo sapiens lamin B1 (LMNB1), mRNA Length = 2882 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 357 ccgccgcccgccatggcgac 376
>ref|XM_958709.1| Neurospora crassa OR74A hypothetical protein (NCU00802.1) partial mRNA Length = 1716 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ctggcacgcctgcgccggcc 226 |||||||||||||||||||| Sbjct: 51 ctggcacgcctgcgccggcc 32
>ref|XM_324981.1| Neurospora crassa OR74A hypothetical protein (NCU00802.1) partial mRNA Length = 1716 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ctggcacgcctgcgccggcc 226 |||||||||||||||||||| Sbjct: 51 ctggcacgcctgcgccggcc 32
>ref|NM_010721.1| Mus musculus lamin B1 (Lmnb1), mRNA Length = 2797 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 243 ccgccgcccgccatggcgac 262
>gb|AY425001.1| Microcystis viridis NIES 102 DNA-dependent RNA polymerase (rpoC1) gene, partial cds Length = 683 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 tcccgcaggggcacatcgagcagg 292 ||||||||||||| |||||||||| Sbjct: 309 tcccgcaggggcatatcgagcagg 286
>gb|AY425000.1| Microcystis aeruginosa strain PCC 7806 DNA-dependent RNA polymerase (rpoC1) gene, partial cds Length = 683 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 tcccgcaggggcacatcgagcagg 292 ||||||||||||| |||||||||| Sbjct: 309 tcccgcaggggcatatcgagcagg 286
>emb|CR731330.2|CNS0GR8N Tetraodon nigroviridis full-length cDNA Length = 1118 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 70 ccggccagcagaagcagcag 51
>gb|BC058392.1| Mus musculus lamin B1, mRNA (cDNA clone MGC:67037 IMAGE:6816118), complete cds Length = 2820 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 238 ccgccgcccgccatggcgac 257
>emb|CR688462.2|CNS0FU62 Tetraodon nigroviridis full-length cDNA Length = 1023 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 43 ccggccagcagaagcagcag 24
>emb|CR688380.2|CNS0FU3S Tetraodon nigroviridis full-length cDNA Length = 1101 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 71 ccggccagcagaagcagcag 52
>emb|CR688266.2|CNS0FU0M Tetraodon nigroviridis full-length cDNA Length = 1057 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 82 ccggccagcagaagcagcag 63
>gb|BC052729.1| Mus musculus lamin B1, mRNA (cDNA clone MGC:64675 IMAGE:6816118), complete cds Length = 2820 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 238 ccgccgcccgccatggcgac 257
>emb|CR656109.2|CNS0F583 Tetraodon nigroviridis full-length cDNA Length = 1123 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 80 ccggccagcagaagcagcag 61
>emb|CR653517.2|CNS0F383 Tetraodon nigroviridis full-length cDNA Length = 1095 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 69 ccggccagcagaagcagcag 50
>emb|CR638918.1|CNS0ERYK Tetraodon nigroviridis full-length cDNA Length = 1102 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 64 ccggccagcagaagcagcag 45
>emb|CR636988.2|CNS0EQGY Tetraodon nigroviridis full-length cDNA Length = 1068 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 43 ccggccagcagaagcagcag 24
>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence Length = 452156 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagca 131 |||||||||||||||||||| Sbjct: 9915 cgccgcgccgccggccagca 9896
>emb|X16705.1|MMLAMINB Mouse mRNA for lamin B Length = 2797 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 243 ccgccgcccgccatggcgac 262
>gb|AC158763.6| Mus musculus chromosome 18, clone RP23-343L17, complete sequence Length = 204022 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 60099 ccgccgcccgccatggcgac 60118
>gb|BC052951.1| Homo sapiens lamin B1, mRNA (cDNA clone IMAGE:5267954), containing frame-shift errors Length = 3545 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 877 ccgccgcccgccatggcgac 896
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2 Length = 178000 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 101053 ccgccgcccgccatggcgac 101072
>emb|CR609276.1| full-length cDNA clone CL0BB025ZF02 of Neuroblastoma of Homo sapiens (human) Length = 1572 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 309 ccgccgcccgccatggcgac 328
>gb|AC092388.5| Oryza sativa chromosome 10 BAC OSJNBa0011L09 genomic sequence, complete sequence Length = 177565 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 cctcgcgccgcgccgccggc 126 |||||||||||||||||||| Sbjct: 117063 cctcgcgccgcgccgccggc 117044
>gb|AC093284.3| Homo sapiens chromosome 5 clone RP11-436A5, complete sequence Length = 91874 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 69173 ccgccgcccgccatggcgac 69154
>gb|AY785851.1| Hordeum vulgare subsp. vulgare cultivar Strider HvCBF4 (CBF4) gene, complete cds Length = 873 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 96 ccggccagcagaagcagcag 115
>gb|AY785853.1| Hordeum vulgare subsp. vulgare cultivar CI16151 (Mla6) HvCBF4B (CBF4B) mRNA, complete cds Length = 924 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 114 ccggccagcagaagcagcag 133
>gb|AY785848.1| Hordeum vulgare subsp. vulgare cultivar Morex HvCBF4B (CBF4B) mRNA, complete cds Length = 888 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 112 ccggccagcagaagcagcag 131
>gb|AY785850.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF4B (CBF4B) mRNA, complete cds Length = 892 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 119 ccggccagcagaagcagcag 138
>gb|AY785849.1| Hordeum vulgare subsp. vulgare cultivar Dicktoo HvCBF4A (CBF4A) mRNA, complete cds Length = 967 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 101 ccggccagcagaagcagcag 120
>dbj|AK132252.1| Mus musculus 12 days embryo embryonic body below diaphragm region cDNA, RIKEN full-length enriched library, clone:3732426K03 product:lamin B1, full insert sequence Length = 2843 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 289 ccgccgcccgccatggcgac 308
>gb|AF298230.1| Hordeum vulgare CBF1-like protein BCBF1 (BCBF1) mRNA, complete cds Length = 915 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 ccggccagcagaagcagcag 141 |||||||||||||||||||| Sbjct: 115 ccggccagcagaagcagcag 134
>dbj|AK079511.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130091A17 product:lamin B1, full insert sequence Length = 1540 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 290 ccgccgcccgccatggcgac 309
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 103 ggttcctcgcgccgcgccgc 122 |||||||||||||||||||| Sbjct: 2603834 ggttcctcgcgccgcgccgc 2603853
>gb|BC012295.1| Homo sapiens lamin B1, mRNA (cDNA clone MGC:5168 IMAGE:3445475), complete cds Length = 2813 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 273 ccgccgcccgccatggcgac 292
>dbj|AK089110.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430039O09 product:lamin B1, full insert sequence Length = 2213 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 256 ccgccgcccgccatggcgac 275
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 cctcgcgccgcgccgccggc 126 |||||||||||||||||||| Sbjct: 12646499 cctcgcgccgcgccgccggc 12646518
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 cgagctctggcacgcctgcgccgg 224 |||||| ||||||||||||||||| Sbjct: 27814387 cgagctgtggcacgcctgcgccgg 27814410
>dbj|D50080.2| Mus musculus gene for lamin B1, complete cds Length = 6552 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 799 ccgccgcccgccatggcgac 818
>gb|AC137794.2| Homo sapiens chromosome 5 clone RP11-434D11, complete sequence Length = 186972 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 91763 ccgccgcccgccatggcgac 91744
>dbj|AP005568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1299_A11 Length = 160099 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gccgccgcccgccatggcga 163 |||||||||||||||||||| Sbjct: 44575 gccgccgcccgccatggcga 44594
>dbj|AP005682.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1531_B07 Length = 115245 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ctcctcgcgcagcagcagct 100 |||||||||||||||||||| Sbjct: 66147 ctcctcgcgcagcagcagct 66166
>gb|L37737.2|HUMLAM01 Homo sapiens lamin B1 gene, exon 1 Length = 2087 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 1665 ccgccgcccgccatggcgac 1684
>dbj|AK099793.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097E23, full insert sequence Length = 2712 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 cgagctctggcacgcctgcgccgg 224 |||||| ||||||||||||||||| Sbjct: 335 cgagctgtggcacgcctgcgccgg 358
>dbj|AK106700.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-E02, full insert sequence Length = 2357 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagca 131 |||||||||||||||||||| Sbjct: 266 cgccgcgccgccggccagca 247
>emb|AJ324872.1|HSA324872 Homo sapiens genomic sequence surrounding NotI site, clone NR5-IF19C Length = 652 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 393 ccgccgcccgccatggcgac 374
>dbj|AK073366.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030H08, full insert sequence Length = 1405 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gccgccgcccgccatggcga 163 |||||||||||||||||||| Sbjct: 49 gccgccgcccgccatggcga 30
>emb|X70183.1|AEHYP A.eutrophus hypA (partial), hypB, hypF, hypC, hypD and hypE genes Length = 4920 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagca 131 |||||||||||||||||||| Sbjct: 1166 cgccgcgccgccggccagca 1147
>gb|M35153.1|MUSLAMB Mus musculus lamin B mRNA, complete cds Length = 2789 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 244 ccgccgcccgccatggcgac 263
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 cgcgccgcgccgccggccag 129 |||||||||||||||||||| Sbjct: 1612394 cgcgccgcgccgccggccag 1612413
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 cctcgcgccgcgccgccggc 126 |||||||||||||||||||| Sbjct: 12653839 cctcgcgccgcgccgccggc 12653858
>dbj|AB074794.1| Microcystis wesenbergii rpoC1 gene for DNA-dependent RNA polymerase, partial cds Length = 885 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 tcccgcaggggcacatcgagcagg 292 ||||||||||||| |||||||||| Sbjct: 254 tcccgcaggggcatatcgagcagg 231
>gb|M34458.1|HUMLAMBA Human lamin B mRNA, complete cds Length = 2850 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 ccgccgcccgccatggcgac 164 |||||||||||||||||||| Sbjct: 330 ccgccgcccgccatggcgac 349
>dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482D04 Length = 144583 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 112 cgccgcgccgccggccagca 131 |||||||||||||||||||| Sbjct: 127323 cgccgcgccgccggccagca 127304
>dbj|AB071290.1| Oryza sativa OsETTIN1 mRNA for Arabidopsis ETTIN-like protein 1, complete cds Length = 2622 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 201 cgagctctggcacgcctgcgccgg 224 |||||| ||||||||||||||||| Sbjct: 227 cgagctgtggcacgcctgcgccgg 250 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,016,336 Number of Sequences: 3902068 Number of extensions: 2016336 Number of successful extensions: 53216 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51738 Number of HSP's gapped (non-prelim): 1478 length of query: 292 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 270 effective length of database: 17,147,199,772 effective search space: 4629743938440 effective search space used: 4629743938440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
