ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl17g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 165 9e-38
2dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic D... 165 9e-38
3dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 9e-38
4dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic D... 165 9e-38
5ref|XM_482249.1| Oryza sativa (japonica cultivar-group), mRNA 161 1e-36
6ref|XM_450615.1| Oryza sativa (japonica cultivar-group), mRNA 105 7e-20
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 105 7e-20
8dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 105 7e-20
9ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA 101 1e-18
10dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 1e-18
11ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 56 6e-05
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 6e-05
13dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 56 6e-05
14dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 6e-05
15ref|XM_473844.1| Oryza sativa (japonica cultivar-group), predic... 44 0.22
16emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 44 0.22
17dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
18emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 44 0.22
19emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4,... 44 0.22
20ref|XM_468154.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.86
21gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.86
22gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.86
23gb|AC104082.3| Homo sapiens BAC clone RP11-570L13 from 4, comple... 42 0.86
24dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.86
25dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.86
26dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.86
27dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.86
28dbj|AK069780.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.86
29gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 0.86
30gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipie... 42 0.86
31ref|XM_466490.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.4
32ref|NM_191023.1| Oryza sativa (japonica cultivar-group), predic... 40 3.4
33gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
34gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
35gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
36gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
37gb|AY639147.1| Stizostedion vitreum vitreum genomic sequence 40 3.4
38gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete ... 40 3.4
39emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207... 40 3.4
40gb|CP000249.1| Frankia sp. CcI3, complete genome 40 3.4
41dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
42dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
44gb|AY741536.1| Pennisetum glaucum TEL1 gene, partial sequence 40 3.4
45dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.4
46dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
47dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
48dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
49emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 40 3.4
50dbj|AK069742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
51gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.4
52emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC OSJNBa... 40 3.4
53emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 3.4 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  165 bits (83), Expect = 9e-38
 Identities = 170/199 (85%)
 Strand = Plus / Plus

                                                                            
Query: 61       cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 120
                |||||||  ||||||||  ||||||||||||||| |||||||| | || ||||| || | 
Sbjct: 19014664 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 19014723

                                                                            
Query: 121      cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 180
                ||||   || ||  |||||||||||  |||||||||||||||||| |||||| |||||||
Sbjct: 19014724 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 19014783

                                                                            
Query: 181      cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 240
                |||||||||  | | |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 19014784 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 19014843

                                   
Query: 241      cgccgagctcgccgtcgac 259
                |||||||||||||||||||
Sbjct: 19014844 cgccgagctcgccgtcgac 19014862
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>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1198_B10
          Length = 119768

 Score =  165 bits (83), Expect = 9e-38
 Identities = 170/199 (85%)
 Strand = Plus / Plus

                                                                         
Query: 61    cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 120
             |||||||  ||||||||  ||||||||||||||| |||||||| | || ||||| || | 
Sbjct: 99584 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 99643

                                                                         
Query: 121   cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 180
             ||||   || ||  |||||||||||  |||||||||||||||||| |||||| |||||||
Sbjct: 99644 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 99703

                                                                         
Query: 181   cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 240
             |||||||||  | | |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 99704 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 99763

                                
Query: 241   cgccgagctcgccgtcgac 259
             |||||||||||||||||||
Sbjct: 99764 cgccgagctcgccgtcgac 99782
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>dbj|AK120068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N11, full
           insert sequence
          Length = 2975

 Score =  165 bits (83), Expect = 9e-38
 Identities = 170/199 (85%)
 Strand = Plus / Plus

                                                                       
Query: 61  cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 120
           |||||||  ||||||||  ||||||||||||||| |||||||| | || ||||| || | 
Sbjct: 90  cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 149

                                                                       
Query: 121 cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 180
           ||||   || ||  |||||||||||  |||||||||||||||||| |||||| |||||||
Sbjct: 150 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 209

                                                                       
Query: 181 cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 240
           |||||||||  | | |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 210 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 269

                              
Query: 241 cgccgagctcgccgtcgac 259
           |||||||||||||||||||
Sbjct: 270 cgccgagctcgccgtcgac 288
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>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1051_A08
          Length = 137583

 Score =  165 bits (83), Expect = 9e-38
 Identities = 170/199 (85%)
 Strand = Plus / Plus

                                                                         
Query: 61    cccgccgacaatggcggagtcgccggagcagttcaggggccagtcccgcctcccccgatt 120
             |||||||  ||||||||  ||||||||||||||| |||||||| | || ||||| || | 
Sbjct: 39451 cccgccgcaaatggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtg 39510

                                                                         
Query: 121   cgccgagcccctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctc 180
             ||||   || ||  |||||||||||  |||||||||||||||||| |||||| |||||||
Sbjct: 39511 cgcctccccgctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctc 39570

                                                                         
Query: 181   cggctccgcgtcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgc 240
             |||||||||  | | |||||||||||| ||||| || ||||| |||||||||||||||||
Sbjct: 39571 cggctccgccgccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgc 39630

                                
Query: 241   cgccgagctcgccgtcgac 259
             |||||||||||||||||||
Sbjct: 39631 cgccgagctcgccgtcgac 39649
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>ref|XM_482249.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2685

 Score =  161 bits (81), Expect = 1e-36
 Identities = 162/189 (85%)
 Strand = Plus / Plus

                                                                       
Query: 71  atggcggagtcgccggagcagttcaggggccagtcccgcctcccccgattcgccgagccc 130
           |||||||  ||||||||||||||| |||||||| | || ||||| || | ||||   || 
Sbjct: 1   atggcggcctcgccggagcagttccggggccaggcgcggctcccgcggtgcgcctccccg 60

                                                                       
Query: 131 ctacgctacgacctcgtcctccgccccgacctcgcggcctgcaccttctccggctccgcg 190
           ||  |||||||||||  |||||||||||||||||| |||||| |||||||||||||||| 
Sbjct: 61  ctcagctacgacctccgcctccgccccgacctcgccgcctgcgccttctccggctccgcc 120

                                                                       
Query: 191 tcggccgccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctc 250
            | | |||||||||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct: 121 gccgtcgccgtcgccgtctccgccccgacccgattcctcgtcctcaacgccgccgagctc 180

                    
Query: 251 gccgtcgac 259
           |||||||||
Sbjct: 181 gccgtcgac 189
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>ref|XM_450615.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2622

 Score =  105 bits (53), Expect = 7e-20
 Identities = 62/65 (95%)
 Strand = Plus / Plus

                                                                       
Query: 197 gccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtc 256
           ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 127 gccgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtc 186

                
Query: 257 gaccg 261
           |||||
Sbjct: 187 gaccg 191
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  105 bits (53), Expect = 7e-20
 Identities = 62/65 (95%)
 Strand = Plus / Plus

                                                                            
Query: 197      gccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtc 256
                ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 11799403 gccgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtc 11799462

                     
Query: 257      gaccg 261
                |||||
Sbjct: 11799463 gaccg 11799467



 Score =  101 bits (51), Expect = 1e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                            
Query: 199      cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 258
                ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 11790221 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 11790280

                   
Query: 259      ccg 261
                |||
Sbjct: 11790281 ccg 11790283



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 238      cgccgccgagctcgccgtcg 257
                ||||||||||||||||||||
Sbjct: 18959982 cgccgccgagctcgccgtcg 18960001
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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1506_A04
          Length = 114998

 Score =  105 bits (53), Expect = 7e-20
 Identities = 62/65 (95%)
 Strand = Plus / Plus

                                                                         
Query: 197   gccgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtc 256
             ||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 42221 gccgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtc 42280

                  
Query: 257   gaccg 261
             |||||
Sbjct: 42281 gaccg 42285



 Score =  101 bits (51), Expect = 1e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                         
Query: 199   cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 258
             ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 33039 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 33098

                
Query: 259   ccg 261
             |||
Sbjct: 33099 ccg 33101
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>ref|XM_450614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2984

 Score =  101 bits (51), Expect = 1e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                       
Query: 199 cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 258
           ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 124 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 183

              
Query: 259 ccg 261
           |||
Sbjct: 184 ccg 186
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>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full
           insert sequence
          Length = 2985

 Score =  101 bits (51), Expect = 1e-18
 Identities = 60/63 (95%)
 Strand = Plus / Plus

                                                                       
Query: 199 cgtcgccgtgtccgcgcccacccgcttcctcgtcctcaacgccgccgagctcgccgtcga 258
           ||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 125 cgtcgacgtctccgcgcccacccgcttcctcgtcctcaacgccgccgacctcgccgtcga 184

              
Query: 259 ccg 261
           |||
Sbjct: 185 ccg 187
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>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 212 gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 251
           ||||||||| | |||||||| |||||||||||||||||||
Sbjct: 256 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 295



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 84  cggagcagttcaggggccag 103
           ||||||||||||||||||||
Sbjct: 128 cggagcagttcaggggccag 147
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 212     gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 251
               ||||||||| | |||||||| |||||||||||||||||||
Sbjct: 6598577 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 6598616



 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 186      ccgcgtcggccgccgtcgccg 206
                |||||||||||||||||||||
Sbjct: 33365600 ccgcgtcggccgccgtcgccg 33365620



 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 238     cgccgccgagctcgccgtcga 258
               |||||||||||||||||||||
Sbjct: 4966777 cgccgccgagctcgccgtcga 4966757



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 142      cctcgtcctccgccccgacctcgc 165
                |||| |||||||||||||||||||
Sbjct: 22935054 cctcctcctccgccccgacctcgc 22935031



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 84      cggagcagttcaggggccag 103
               ||||||||||||||||||||
Sbjct: 6598449 cggagcagttcaggggccag 6598468
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 212   gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 251
             ||||||||| | |||||||| |||||||||||||||||||
Sbjct: 32952 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 32991



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    cggagcagttcaggggccag 103
             ||||||||||||||||||||
Sbjct: 32824 cggagcagttcaggggccag 32843
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>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
           insert sequence
          Length = 3020

 Score = 56.0 bits (28), Expect = 6e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                   
Query: 212 gcgcccacccgcttcctcgtcctcaacgccgccgagctcg 251
           ||||||||| | |||||||| |||||||||||||||||||
Sbjct: 256 gcgcccaccaggttcctcgtgctcaacgccgccgagctcg 295



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 84  cggagcagttcaggggccag 103
           ||||||||||||||||||||
Sbjct: 128 cggagcagttcaggggccag 147
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>ref|XM_473844.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2910

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 238 cgccgccgagctcgccgtcgac 259
           ||||||||||||||||||||||
Sbjct: 309 cgccgccgagctcgccgtcgac 330
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>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
             complete sequence
          Length = 150551

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 238   cgccgccgagctcgccgtcgac 259
             ||||||||||||||||||||||
Sbjct: 50238 cgccgccgagctcgccgtcgac 50217
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 238      cgccgccgagctcgccgtcgac 259
                ||||||||||||||||||||||
Sbjct: 35300808 cgccgccgagctcgccgtcgac 35300787



 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 238      cgccgccgagctcgccgtcgac 259
                ||||||||||||||||||||||
Sbjct: 30952866 cgccgccgagctcgccgtcgac 30952845
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
              sequence
          Length = 134586

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 238    cgccgccgagctcgccgtcgac 259
              ||||||||||||||||||||||
Sbjct: 129870 cgccgccgagctcgccgtcgac 129849
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>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24,
             complete sequence
          Length = 173770

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 238   cgccgccgagctcgccgtcgac 259
             ||||||||||||||||||||||
Sbjct: 96653 cgccgccgagctcgccgtcgac 96632
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>ref|XM_468154.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 924

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 186 ccgcgtcggccgccgtcgccg 206
           |||||||||||||||||||||
Sbjct: 151 ccgcgtcggccgccgtcgccg 131
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>gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015C02,
             complete sequence
          Length = 147407

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 165   cggcctgcaccttctccggctccgc 189
             ||||||||||||||||| |||||||
Sbjct: 26988 cggcctgcaccttctcccgctccgc 27012
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>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0052E20, complete sequence
          Length = 162434

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 165   cggcctgcaccttctccggctccgc 189
             ||||||||||||||||| |||||||
Sbjct: 68521 cggcctgcaccttctcccgctccgc 68545
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>gb|AC104082.3| Homo sapiens BAC clone RP11-570L13 from 4, complete sequence
          Length = 182770

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 3     gaagctactgtgttcagaaaa 23
             |||||||||||||||||||||
Sbjct: 21600 gaagctactgtgttcagaaaa 21620
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 165      cggcctgcaccttctccggctccgc 189
                ||||||||||||||||| |||||||
Sbjct: 22964508 cggcctgcaccttctcccgctccgc 22964532



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 238      cgccgccgagctcgccgtcg 257
                ||||||||||||||||||||
Sbjct: 22308796 cgccgccgagctcgccgtcg 22308815
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>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0031B09
          Length = 132729

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   cgccgccgagctcgccgtcga 258
             |||||||||||||||||||||
Sbjct: 37903 cgccgccgagctcgccgtcga 37883
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>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1145_F01
          Length = 113755

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 238    cgccgccgagctcgccgtcga 258
              |||||||||||||||||||||
Sbjct: 111516 cgccgccgagctcgccgtcga 111496
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>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1715_H01
          Length = 138733

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 186    ccgcgtcggccgccgtcgccg 206
              |||||||||||||||||||||
Sbjct: 106350 ccgcgtcggccgccgtcgccg 106370
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>dbj|AK069780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028F19, full
           insert sequence
          Length = 3290

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 165 cggcctgcaccttctccggctccgc 189
           ||||||||||||||||| |||||||
Sbjct: 212 cggcctgcaccttctcccgctccgc 188
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 225     tcctcgtcctcaacgccgccg 245
               |||||||||||||||||||||
Sbjct: 2668988 tcctcgtcctcaacgccgccg 2668968
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>gb|AC168019.4| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940127D9, complete sequence
          Length = 102832

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 238  cgccgccgagctcgccgtcga 258
            |||||||||||||||||||||
Sbjct: 3247 cgccgccgagctcgccgtcga 3267
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>ref|XM_466490.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1768

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 142 cctcgtcctccgccccgacctcgc 165
           |||| |||||||||||||||||||
Sbjct: 6   cctcctcctccgccccgacctcgc 29
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>ref|NM_191023.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 891

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 238 cgccgccgagctcgccgtcg 257
           ||||||||||||||||||||
Sbjct: 795 cgccgccgagctcgccgtcg 776
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>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
            OSJNBa0019D02, complete sequence
          Length = 154692

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 238  cgccgccgagctcgccgtcg 257
            ||||||||||||||||||||
Sbjct: 5244 cgccgccgagctcgccgtcg 5263
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>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
             complete sequence
          Length = 131860

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   cgccgccgagctcgccgtcg 257
             ||||||||||||||||||||
Sbjct: 10431 cgccgccgagctcgccgtcg 10450
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>gb|AC151537.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0087D01, complete sequence
          Length = 83225

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   cgccgccgagctcgccgtcg 257
             ||||||||||||||||||||
Sbjct: 27684 cgccgccgagctcgccgtcg 27703
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>gb|AC151407.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0073M15,
              complete sequence
          Length = 143071

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 238    cgccgccgagctcgccgtcg 257
              ||||||||||||||||||||
Sbjct: 106583 cgccgccgagctcgccgtcg 106602
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>gb|AY639147.1| Stizostedion vitreum vitreum genomic sequence
          Length = 10284

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 239  gccgccgagctcgccgtcgaccgg 262
            ||||||||||||||||||| ||||
Sbjct: 8272 gccgccgagctcgccgtcggccgg 8249
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>gb|AC166568.2| Spironucleus vortens clone JGIBAWF-9N8, complete sequence
          Length = 38345

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 231   tcctcaacgccgccgagctcgccg 254
             |||||| |||||||||||||||||
Sbjct: 23810 tcctcaccgccgccgagctcgccg 23833
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>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome
          Length = 124321

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   cgccgccgagctcgccgtcg 257
             ||||||||||||||||||||
Sbjct: 60972 cgccgccgagctcgccgtcg 60991
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 192    cggccgccgtcgccgtgtccgcgc 215
              ||||||||||||||||| ||||||
Sbjct: 507228 cggccgccgtcgccgtggccgcgc 507205
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 239      gccgccgagctcgccgtcga 258
                ||||||||||||||||||||
Sbjct: 14154294 gccgccgagctcgccgtcga 14154275



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 238     cgccgccgagctcgccgtcg 257
               ||||||||||||||||||||
Sbjct: 4922019 cgccgccgagctcgccgtcg 4922038
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 84       cggagcagttcaggggccag 103
                ||||||||||||||||||||
Sbjct: 12319113 cggagcagttcaggggccag 12319094
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 238      cgccgccgagctcgccgtcg 257
                ||||||||||||||||||||
Sbjct: 34362544 cgccgccgagctcgccgtcg 34362525
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>gb|AY741536.1| Pennisetum glaucum TEL1 gene, partial sequence
          Length = 3162

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 238 cgccgccgagctcgccgtcg 257
           ||||||||||||||||||||
Sbjct: 305 cgccgccgagctcgccgtcg 324
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 183     gctccgcgtcggccgccgtc 202
               ||||||||||||||||||||
Sbjct: 3883160 gctccgcgtcggccgccgtc 3883179
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>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0468B07
          Length = 169071

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   cgccgccgagctcgccgtcg 257
             ||||||||||||||||||||
Sbjct: 44888 cgccgccgagctcgccgtcg 44869
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>dbj|AP003511.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0578B12
          Length = 151192

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    cggagcagttcaggggccag 103
             ||||||||||||||||||||
Sbjct: 35573 cggagcagttcaggggccag 35554
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>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0016G10
          Length = 143211

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 142   cctcgtcctccgccccgacctcgc 165
             |||| |||||||||||||||||||
Sbjct: 54856 cctcctcctccgccccgacctcgc 54833
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>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   cgccgccgagctcgccgtcg 257
             ||||||||||||||||||||
Sbjct: 16403 cgccgccgagctcgccgtcg 16384
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>dbj|AK069742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030E07, full
           insert sequence
          Length = 1764

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 142 cctcgtcctccgccccgacctcgc 165
           |||| |||||||||||||||||||
Sbjct: 6   cctcctcctccgccccgacctcgc 29
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 239      gccgccgagctcgccgtcga 258
                ||||||||||||||||||||
Sbjct: 14108574 gccgccgagctcgccgtcga 14108555



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 238     cgccgccgagctcgccgtcg 257
               ||||||||||||||||||||
Sbjct: 4922001 cgccgccgagctcgccgtcg 4922020
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>emb|AL732644.3|CNS08C9J Oryza sativa chromosome 12, . BAC OSJNBa0016A01 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 150703

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 239   gccgccgagctcgccgtcga 258
             ||||||||||||||||||||
Sbjct: 80835 gccgccgagctcgccgtcga 80816
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>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   cgccgccgagctcgccgtcg 257
             ||||||||||||||||||||
Sbjct: 37940 cgccgccgagctcgccgtcg 37921


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,699,874
Number of Sequences: 3902068
Number of extensions: 1699874
Number of successful extensions: 45294
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43877
Number of HSP's gapped (non-prelim): 1412
length of query: 263
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 241
effective length of database: 17,147,199,772
effective search space: 4132475145052
effective search space used: 4132475145052
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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