>FRIGI_ARATH (Q9FDW0) FRIGIDA protein|
          Length = 609

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 28  FPKGREEDHDTLSVTVAASLSVCASFPH 111
           FP  R++D D +S  V++ L    SFPH
Sbjct: 479 FPSQRDDDQDEISALVSSYLGPSTSFPH 506

>BRC2_HALRO (O01409) T-box-containing protein 2 (AS-T2)|
          Length = 681

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 176 PKCFFIHDNAPTNPVKWIS 232
           P+ FF+H N+P N  KW+S
Sbjct: 218 PQRFFLHPNSPANGSKWMS 236

>Y1113_VIBVY (Q7MMF9) UPF0207 protein VV1113|
          Length = 194

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 346 LSSGAHHMGAACEGRSFTLAHEQTKKHERAFDTYQPSWRDPLDWIS 209
           LS+G H    A +    TLA  +T + +   +T+ PS+   LD IS
Sbjct: 149 LSAGNHEFALAKKRLDITLAERKTPEMDYFLNTFAPSFELSLDEIS 194

>Y013_VIBVU (Q8DG35) UPF0207 protein VV1_0013|
          Length = 125

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 346 LSSGAHHMGAACEGRSFTLAHEQTKKHERAFDTYQPSWRDPLDWIS 209
           LS+G H    A +    TLA  +T + +   +T+ PS+   LD IS
Sbjct: 80  LSAGNHEFALAKKRLDITLAERKTPEMDYFLNTFAPSFELSLDEIS 125

>OCLN_POTTR (Q28793) Occludin|
          Length = 489

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 146 HYKNA*PLWRPKCFFIHDNAPTNPVKWISPARLISV-EGSLVLLRL--FMC 289
           HY    P   P  F++ D  P +  +W SP  ++ + +GS+V+L L  F C
Sbjct: 17  HYDYPPPSGPPGSFYLADVPPQHFYQWRSPPGIVRILQGSVVILCLVIFAC 67

>CDC15_SCHPO (Q09822) Cell division control protein 15|
          Length = 927

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 362 ASSAPAQLRRTSHGSSL*RTQLHPRT*TNEEARESLRHLSAELERS 225
           A+   AQ++R S+  +    Q+     T   ARESLRH  + + RS
Sbjct: 655 AAHTSAQMQRMSNSFASQTKQVFGEQRTENSARESLRHSRSNMSRS 700

>EFTU_CORGL (P42439) Elongation factor Tu (EF-Tu)|
          Length = 396

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -3

Query: 367 VRRALLLLSSGAHHMGAACEGRSFTLAHEQTKKHERAFDTYQPSW 233
           V R  +++  GA+      EG  + L+ ++  +H   FD Y+P +
Sbjct: 289 VERGQVIVKPGAYTPHTEFEGSVYVLSKDEGGRHTPFFDNYRPQF 333

>HSCB_SHEON (Q8EEU6) Co-chaperone protein hscB homolog|
          Length = 174

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -3

Query: 304 RSFTLAHEQTKKHERAFDTYQPSWRDPLDWISRSI----IMNE 188
           R   L+HE T   + AF   Q  WR+ L+ I  SI    I+NE
Sbjct: 75  RGIDLSHETTTVKDTAFLMQQMEWREALEDIRESIDHQAIINE 117

>Y926_VIBPA (Q87R72) UPF0207 protein VP0926|
          Length = 194

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 346 LSSGAHHMGAACEGRSFTLAHEQTKKHERAFDTYQPSWRDPLDWIS 209
           LS+G H    A +    TL   +T + E   +T+ PS+   LD IS
Sbjct: 149 LSAGNHEFALAKKRLDVTLQERKTPEMEYFLNTFAPSFELSLDEIS 194

>ZC3H3_MOUSE (Q8CHP0) Zinc finger CCCH-type domain-containing protein 3|
          Length = 950

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
 Frame = -3

Query: 385 LCCHSGVRRALLLLSSGAHHMGAACEGRSFTLAHEQTKKHERA------FDTYQPSWRDP 224
           LCC    R  L    + + HMG     +     +   KK   +      F +  PSWR  
Sbjct: 503 LCCLPSSRTHLSTKEASSVHMGIPPSNKVIKTRYRIVKKTPSSSFGAPSFPSSLPSWRAR 562

Query: 223 LDWISRSIIMN 191
              +SRS+++N
Sbjct: 563 RIPLSRSLVLN 573

>RAV1_YEAST (P47104) Regulator of V-ATPase in vacuolar membrane protein 1|
           (Suppression of the onset of impotence protein 3)
          Length = 1357

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 164 PLWRPKCFFIHDNAPTNPVKWISPARL 244
           P W   C   HD+ P N ++W S   L
Sbjct: 88  PKWTQCCQLFHDDTPVNCLRWSSDNEL 114

>YME1_CAEEL (P54813) Protein YME1 homolog (EC 3.4.24.-)|
          Length = 676

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -1

Query: 351 SCSAQAHITWEQLVKDAASPSHMNKRRSTREPSTL---ISRAGEIHL 220
           S S   H  W Q   D +SP  +N+  +    STL   I+R  EI L
Sbjct: 39  SLSRVYHQVWRQFSSDTSSPVTINQMNNILRDSTLSRRIARKSEISL 85

>BDLF2_EBV (P03225) Protein BDLF2|
          Length = 420

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 48  GPRYSLCHCRCLTVCLRFLPPLVHNCVPPLHCAI 149
           GP +      C    L F P LV NC  PL  ++
Sbjct: 347 GPEFGTIPTPCFKDVLAFRPSLVTNCTAPLKTSV 380

>RDRP_MCMV (P11640) Probable RNA-directed RNA polymerase (EC 2.7.7.48) (111 kDa|
            protein) [Contains: 50 kDa protein]
          Length = 964

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 301  SFTLAHEQTKKHERAFDTYQPSWRDPLDWISRSII 197
            SF LA   T   +RA + Y  SW    +W +  I+
Sbjct: 913  SFWLAFGYTPDEQRALEEYFKSWTPTFEWSTTGIL 947


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,817,624
Number of Sequences: 219361
Number of extensions: 1025887
Number of successful extensions: 3198
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3198
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)