ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl17g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_464102.1| Oryza sativa (japonica cultivar-group), mRNA 226 4e-56
2ref|XM_506716.1| PREDICTED Oryza sativa (japonica cultivar-group... 226 4e-56
3dbj|AK074020.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 4e-56
4dbj|AK067279.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 4e-56
5dbj|AK072069.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 1e-43
6dbj|AK067999.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 1e-43
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
8dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
9dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
10dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
11emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete ... 44 0.33
12gb|M75136.1|IH1CG Ictalurid herpesvirus 1 strain Auburn 1, compl... 42 1.3
13emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 42 1.3
14gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 42 1.3
15ref|XM_514249.1| PREDICTED: Pan troglodytes similar to RIKEN cDN... 40 5.2
16gb|AY613335.1| Schistidium antarctici voucher SR8 internal trans... 40 5.2
17gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 5.2
18ref|XM_421493.1| PREDICTED: Gallus gallus similar to KIAA0261; f... 40 5.2
19gb|AE007249.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 5.2
20gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 40 5.2
21emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 5.2
22gb|AC132272.3| Mus musculus BAC clone RP24-339P23 from chromosom... 40 5.2
23emb|AL451054.22| Human DNA sequence from clone RP11-275O4 on chr... 40 5.2
24gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 5.2
25emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 5.2
26emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 5.2
27gb|AC159199.3| Mus musculus BAC clone RP23-401H23 from chromosom... 40 5.2
28gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.2
29dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
30ref|XM_580019.1| PREDICTED: Rattus norvegicus LOC499811 (LOC4998... 40 5.2
31gb|AY954394.1| Oryza sativa (japonica cultivar-group) polyubiqui... 40 5.2
32dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
33dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
34gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par... 40 5.2
35gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
36emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.2

>ref|XM_464102.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3311

 Score =  226 bits (114), Expect = 4e-56
 Identities = 132/138 (95%)
 Strand = Plus / Plus

                                                                       
Query: 238 gtcttcgcctactacatcaccggccacggcttcggccacgccacccgcgccctcgaggtg 297
           |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 161 gtcttcgcgtactacatcaccggccatggcttcggccacgccacccgcgcgctcgaggtg 220

                                                                       
Query: 298 gtgaggcacctgatcggcgcggggcacgacgtgcacgtggtcaccgccgcgccggagttc 357
           ||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 221 gtgaggcacctgatcgcggcggggcacgacgtgcacgtggtcaccggcgcgccggagttc 280

                             
Query: 358 gtcttcaccaccgagatc 375
           ||||||||||||||||||
Sbjct: 281 gtcttcaccaccgagatc 298



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>ref|XM_506716.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1123_E07.2 mRNA
          Length = 3765

 Score =  226 bits (114), Expect = 4e-56
 Identities = 132/138 (95%)
 Strand = Plus / Plus

                                                                       
Query: 238 gtcttcgcctactacatcaccggccacggcttcggccacgccacccgcgccctcgaggtg 297
           |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 156 gtcttcgcgtactacatcaccggccatggcttcggccacgccacccgcgcgctcgaggtg 215

                                                                       
Query: 298 gtgaggcacctgatcggcgcggggcacgacgtgcacgtggtcaccgccgcgccggagttc 357
           ||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 216 gtgaggcacctgatcgcggcggggcacgacgtgcacgtggtcaccggcgcgccggagttc 275

                             
Query: 358 gtcttcaccaccgagatc 375
           ||||||||||||||||||
Sbjct: 276 gtcttcaccaccgagatc 293



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>dbj|AK074020.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075P06, full
           insert sequence
          Length = 3312

 Score =  226 bits (114), Expect = 4e-56
 Identities = 132/138 (95%)
 Strand = Plus / Plus

                                                                       
Query: 238 gtcttcgcctactacatcaccggccacggcttcggccacgccacccgcgccctcgaggtg 297
           |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 161 gtcttcgcgtactacatcaccggccatggcttcggccacgccacccgcgcgctcgaggtg 220

                                                                       
Query: 298 gtgaggcacctgatcggcgcggggcacgacgtgcacgtggtcaccgccgcgccggagttc 357
           ||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 221 gtgaggcacctgatcgcggcggggcacgacgtgcacgtggtcaccggcgcgccggagttc 280

                             
Query: 358 gtcttcaccaccgagatc 375
           ||||||||||||||||||
Sbjct: 281 gtcttcaccaccgagatc 298



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>dbj|AK067279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097O08, full
           insert sequence
          Length = 3764

 Score =  226 bits (114), Expect = 4e-56
 Identities = 132/138 (95%)
 Strand = Plus / Plus

                                                                       
Query: 238 gtcttcgcctactacatcaccggccacggcttcggccacgccacccgcgccctcgaggtg 297
           |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 155 gtcttcgcgtactacatcaccggccatggcttcggccacgccacccgcgcgctcgaggtg 214

                                                                       
Query: 298 gtgaggcacctgatcggcgcggggcacgacgtgcacgtggtcaccgccgcgccggagttc 357
           ||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 215 gtgaggcacctgatcgcggcggggcacgacgtgcacgtggtcaccggcgcgccggagttc 274

                             
Query: 358 gtcttcaccaccgagatc 375
           ||||||||||||||||||
Sbjct: 275 gtcttcaccaccgagatc 292



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>dbj|AK072069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108L09, full
           insert sequence
          Length = 3647

 Score =  184 bits (93), Expect = 1e-43
 Identities = 129/141 (91%)
 Strand = Plus / Plus

                                                                       
Query: 232 cgcctcgtcttcgcctactacatcaccggccacggcttcggccacgccacccgcgccctc 291
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 108 cgcctcgtcttcgccttctacctcaccggccacggcttcggccacgccacccgcgccatc 167

                                                                       
Query: 292 gaggtggtgaggcacctgatcggcgcggggcacgacgtgcacgtggtcaccgccgcgccg 351
           ||||||||| ||||||||||||  ||||||||||| |||||||||| ||| || | ||||
Sbjct: 168 gaggtggtgcggcacctgatcgcggcggggcacgaggtgcacgtggccacggcggtgccg 227

                                
Query: 352 gagttcgtcttcaccaccgag 372
           ||||||||||||||| |||||
Sbjct: 228 gagttcgtcttcaccgccgag 248



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>dbj|AK067999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129F06, full
           insert sequence
          Length = 3724

 Score =  184 bits (93), Expect = 1e-43
 Identities = 129/141 (91%)
 Strand = Plus / Plus

                                                                       
Query: 232 cgcctcgtcttcgcctactacatcaccggccacggcttcggccacgccacccgcgccctc 291
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 106 cgcctcgtcttcgccttctacctcaccggccacggcttcggccacgccacccgcgccatc 165

                                                                       
Query: 292 gaggtggtgaggcacctgatcggcgcggggcacgacgtgcacgtggtcaccgccgcgccg 351
           ||||||||| ||||||||||||  ||||||||||| |||||||||| ||| || | ||||
Sbjct: 166 gaggtggtgcggcacctgatcgcggcggggcacgaggtgcacgtggccacggcggtgccg 225

                                
Query: 352 gagttcgtcttcaccaccgag 372
           ||||||||||||||| |||||
Sbjct: 226 gagttcgtcttcaccgccgag 246



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  141 bits (71), Expect = 2e-30
 Identities = 80/83 (96%)
 Strand = Plus / Minus

                                                                           
Query: 293     aggtggtgaggcacctgatcggcgcggggcacgacgtgcacgtggtcaccgccgcgccgg 352
               |||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||
Sbjct: 2238830 aggtggtgaggcacctgatcgcggcggggcacgacgtgcacgtggtcaccggcgcgccgg 2238771

                                      
Query: 353     agttcgtcttcaccaccgagatc 375
               |||||||||||||||||||||||
Sbjct: 2238770 agttcgtcttcaccaccgagatc 2238748



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                          
Query: 238     gtcttcgcctactacatcaccggccacggcttcggccacgccacccgcgccctcgaggt 296
               |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 2239066 gtcttcgcgtactacatcaccggccatggcttcggccacgccacccgcgcgctcgaggt 2239008



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>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1123_E07
          Length = 113187

 Score =  141 bits (71), Expect = 2e-30
 Identities = 80/83 (96%)
 Strand = Plus / Minus

                                                                         
Query: 293   aggtggtgaggcacctgatcggcgcggggcacgacgtgcacgtggtcaccgccgcgccgg 352
             |||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||
Sbjct: 25779 aggtggtgaggcacctgatcgcggcggggcacgacgtgcacgtggtcaccggcgcgccgg 25720

                                    
Query: 353   agttcgtcttcaccaccgagatc 375
             |||||||||||||||||||||||
Sbjct: 25719 agttcgtcttcaccaccgagatc 25697



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                        
Query: 238   gtcttcgcctactacatcaccggccacggcttcggccacgccacccgcgccctcgaggt 296
             |||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 26015 gtcttcgcgtactacatcaccggccatggcttcggccacgccacccgcgcgctcgaggt 25957



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Plus

                                                                            
Query: 232      cgcctcgtcttcgcctactacatcaccggccacggcttcggccacgccacccgcgccctc 291
                |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 29110480 cgcctcgtcttcgccttctacctcaccggccacggcttcggccacgccacccgcgccatc 29110539

                     
Query: 292      gaggt 296
                |||||
Sbjct: 29110540 gaggt 29110544



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                            
Query: 293      aggtggtgaggcacctgatcggcgcggggcacgacgtgcacgtggtcaccgccgcgccgg 352
                |||||||| ||||||||||||  ||||||||||| |||||||||| ||| || | |||||
Sbjct: 29110611 aggtggtgcggcacctgatcgcggcggggcacgaggtgcacgtggccacggcggtgccgg 29110670

                                    
Query: 353      agttcgtcttcaccaccgag 372
                |||||||||||||| |||||
Sbjct: 29110671 agttcgtcttcaccgccgag 29110690



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 213     ggcggcgccgacgcagcagc 232
               ||||||||||||||||||||
Sbjct: 7834261 ggcggcgccgacgcagcagc 7834242



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>dbj|AP003726.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0596H10
          Length = 166570

 Score =  105 bits (53), Expect = 1e-19
 Identities = 62/65 (95%)
 Strand = Plus / Plus

                                                                          
Query: 232    cgcctcgtcttcgcctactacatcaccggccacggcttcggccacgccacccgcgccctc 291
              |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 125467 cgcctcgtcttcgccttctacctcaccggccacggcttcggccacgccacccgcgccatc 125526

                   
Query: 292    gaggt 296
              |||||
Sbjct: 125527 gaggt 125531



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                          
Query: 293    aggtggtgaggcacctgatcggcgcggggcacgacgtgcacgtggtcaccgccgcgccgg 352
              |||||||| ||||||||||||  ||||||||||| |||||||||| ||| || | |||||
Sbjct: 125598 aggtggtgcggcacctgatcgcggcggggcacgaggtgcacgtggccacggcggtgccgg 125657

                                  
Query: 353    agttcgtcttcaccaccgag 372
              |||||||||||||| |||||
Sbjct: 125658 agttcgtcttcaccgccgag 125677



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>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29
          Length = 298450

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 213    ggcggcgccgacgcagcagcgc 234
              ||||||||||||||||||||||
Sbjct: 101339 ggcggcgccgacgcagcagcgc 101318



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>gb|M75136.1|IH1CG Ictalurid herpesvirus 1 strain Auburn 1, complete genome
          Length = 134226

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 362   tcaccaccgagatcgactccc 382
             |||||||||||||||||||||
Sbjct: 45766 tcaccaccgagatcgactccc 45786



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>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 192   ccggggaagcggcgccgaggaggcg 216
             |||||| ||||||||||||||||||
Sbjct: 98005 ccggggcagcggcgccgaggaggcg 97981



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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 262    cacggcttcggccacgccacccgcg 286
              |||||||||||||||||| ||||||
Sbjct: 233905 cacggcttcggccacgccgcccgcg 233929



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>ref|XM_514249.1| PREDICTED: Pan troglodytes similar to RIKEN cDNA 5830415L20
            (LOC457792), mRNA
          Length = 1784

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 90   cgatcagccgacccagtcct 109
            ||||||||||||||||||||
Sbjct: 1254 cgatcagccgacccagtcct 1273



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>gb|AY613335.1| Schistidium antarctici voucher SR8 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, complete sequence; and 26S
           ribosomal RNA gene, partial sequence
          Length = 690

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  tcagccgacccagtcctccc 112
           ||||||||||||||||||||
Sbjct: 475 tcagccgacccagtcctccc 456



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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
              genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    cgtcttcgcctactacatca 256
              ||||||||||||||||||||
Sbjct: 767317 cgtcttcgcctactacatca 767298



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>ref|XM_421493.1| PREDICTED: Gallus gallus similar to KIAA0261; friend of EBNA2
           (LOC423608), mRNA
          Length = 5637

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                       
Query: 196 ggaagcggcgccg-aggaggcggcgccg 222
           ||||||||||||| ||||||||||||||
Sbjct: 372 ggaagcggcgccggaggaggcggcgccg 399



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>gb|AE007249.1| Sinorhizobium meliloti 1021 plasmid pSymA section 55 of 121 of the
            complete plasmid sequence
          Length = 10029

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 356  tcgtcttcaccaccgagatcgact 379
            |||||||||||| |||||||||||
Sbjct: 9058 tcgtcttcaccatcgagatcgact 9081



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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 275     acgccacccgcgccctcgag 294
               ||||||||||||||||||||
Sbjct: 2932453 acgccacccgcgccctcgag 2932434



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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 223    acgcagcagcgcctcgtcttcgcc 246
              |||||||||||| |||||||||||
Sbjct: 982695 acgcagcagcgcttcgtcttcgcc 982672



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>gb|AC132272.3| Mus musculus BAC clone RP24-339P23 from chromosome 16, complete sequence
          Length = 147166

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ctctcgctctcccccacccc 41
              ||||||||||||||||||||
Sbjct: 146389 ctctcgctctcccccacccc 146408



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>emb|AL451054.22| Human DNA sequence from clone RP11-275O4 on chromosome 1 Contains two
              tubulin beta pseudogenes, a novel gene, the 5' end of a
              novel protein (MGC42493) and four CpG islands, complete
              sequence
          Length = 147567

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     cgatcagccgacccagtcct 109
              ||||||||||||||||||||
Sbjct: 121374 cgatcagccgacccagtcct 121355



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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 254    tcaccggccacggcttcggccacg 277
              ||||||| ||||||||||||||||
Sbjct: 500554 tcaccggtcacggcttcggccacg 500531



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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    cgtcttcgcctactacatca 256
              ||||||||||||||||||||
Sbjct: 840387 cgtcttcgcctactacatca 840368



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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 237    cgtcttcgcctactacatca 256
              ||||||||||||||||||||
Sbjct: 850502 cgtcttcgcctactacatca 850483



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>gb|AC159199.3| Mus musculus BAC clone RP23-401H23 from chromosome 16, complete sequence
          Length = 218059

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ctctcgctctcccccacccc 41
              ||||||||||||||||||||
Sbjct: 120991 ctctcgctctcccccacccc 121010



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 213     ggcggcgccgacgcagcagc 232
               ||||||||||||||||||||
Sbjct: 5297932 ggcggcgccgacgcagcagc 5297951



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 199     agcggcgccgaggaggcggc 218
               ||||||||||||||||||||
Sbjct: 5149762 agcggcgccgaggaggcggc 5149743



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 200      gcggcgccgaggaggcggcg 219
                ||||||||||||||||||||
Sbjct: 20966734 gcggcgccgaggaggcggcg 20966753



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>ref|XM_580019.1| PREDICTED: Rattus norvegicus LOC499811 (LOC499811), mRNA
          Length = 905

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 201 cggcgccgaggaggcggcgccgac 224
           |||||||||||||||||| |||||
Sbjct: 115 cggcgccgaggaggcggccccgac 138



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>gb|AY954394.1| Oryza sativa (japonica cultivar-group) polyubiquitin (rubi3) gene,
            promoter region and complete cds
          Length = 3733

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  cagcagcgcctcgtcttcgc 245
            ||||||||||||||||||||
Sbjct: 3318 cagcagcgcctcgtcttcgc 3337



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>dbj|AP005107.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0431E05
          Length = 146091

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   ggcggcgccgacgcagcagc 232
             ||||||||||||||||||||
Sbjct: 48643 ggcggcgccgacgcagcagc 48624



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>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0091G06
          Length = 161851

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    ggcggcgccgacgcagcagc 232
              ||||||||||||||||||||
Sbjct: 146759 ggcggcgccgacgcagcagc 146740



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>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative
             Cf-2, fertilization-independent endosperm proteins,
             hypothetical protein, putative non-LTR retroelement
             reverse transcriptase, OCL5 protein, tryptophan synthase
             beta-subunit, hypothetical proteins, putative AP
             endonuclease, putative RNA polymerase II complex component
             SRB7, putative beta-1,3-glucanase, hypothetical protein,
             TNP2-like protein, hypothetical protein, putative
             phosphate/phosphoenolpyruvate translocator, putative
             protein, hypothetical proteins, putative
             galactosyltransferase family, hypothetical protein,
             putative cytochrome P450 family, putative lipid transfer
             protein, putative photoreceptor-interacting protein, and
             hypothetical protein genes, complete cds; and hypothetical
             protein gene, partial cds
          Length = 202197

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   gcggcgccgacgcagcagcg 233
             ||||||||||||||||||||
Sbjct: 70372 gcggcgccgacgcagcagcg 70353



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 200      gcggcgccgaggaggcggcg 219
                ||||||||||||||||||||
Sbjct: 20892943 gcggcgccgaggaggcggcg 20892962



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>emb|AL713943.3|CNS07YPC Oryza sativa chromosome 12, . BAC OSJNBa0030G16 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 182172

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   gcggcgccgaggaggcggcg 219
             ||||||||||||||||||||
Sbjct: 52219 gcggcgccgaggaggcggcg 52238


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,345,816
Number of Sequences: 3902068
Number of extensions: 2345816
Number of successful extensions: 58290
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 57697
Number of HSP's gapped (non-prelim): 594
length of query: 390
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 368
effective length of database: 17,147,199,772
effective search space: 6310169516096
effective search space used: 6310169516096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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