ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl17g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC109283.8| Mus musculus chromosome 1, clone RP24-156F3, comp... 44 0.31
2gb|AC122773.8| Mus musculus chromosome 1, clone RP24-160N7, comp... 44 0.31
3gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.31
4gb|AC078834.5| Homo sapiens BAC clone RP11-69O3 from 7, complete... 44 0.31
5gb|AY422195.1| Homo sapiens sonic hedgehog homolog (Drosophila) ... 44 0.31
6gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Can... 44 0.31
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.31
8gb|AC147335.2| Pan troglodytes BAC clone RP43-4C1 from chromosom... 44 0.31
9dbj|AK100498.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.31
10dbj|AK059282.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.31
11gb|AC002484.1|AC002484 Human cosmid clone LL157A05 from 7q36, co... 44 0.31
12gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.31
13ref|XM_513678.1| PREDICTED: Pan troglodytes similar to Sodium/po... 40 4.8
14gb|AY795074.1| Homo sapiens matrix metalloproteinase 14 (membran... 40 4.8
15gb|AC102240.12| Mus musculus chromosome 18, clone RP24-122C12, c... 40 4.8
16gb|AF026198.1| Fugu rubripes neural cell adhesion molecule L1 ho... 40 4.8
17gb|AC100986.9| Mus musculus chromosome 3, clone RP23-77E5, compl... 40 4.8
18ref|NM_010718.3| Mus musculus LIM motif-containing protein kinas... 40 4.8
19gb|AC157910.4| Mus musculus chromosome 18, clone RP24-372A6, com... 40 4.8
20gb|AC165348.3| Mus musculus BAC clone RP23-300C11 from chromosom... 40 4.8
21gb|BC039581.1| Homo sapiens matrix metallopeptidase 14 (membrane... 40 4.8
22gb|AC121884.3| Mus musculus BAC clone RP24-138L20 from chromosom... 40 4.8
23gb|AC005911.6| Homo sapiens 12 BAC RP11-372B4 (Roswell Park Canc... 40 4.8
24gb|BC064803.1| Homo sapiens matrix metallopeptidase 14 (membrane... 40 4.8
25ref|NM_201441.1| Homo sapiens TEA domain family member 4 (TEAD4)... 40 4.8
26ref|NM_003213.2| Homo sapiens TEA domain family member 4 (TEAD4)... 40 4.8
27emb|BX051744.1|CNS09C38 Single read from an extremity of a full-... 40 4.8
28emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 40 4.8
29gb|AY101179.1| Homo sapiens related transcription enhancer facto... 40 4.8
30gb|DQ028426.1| Streptosiphon hirsutus 18S ribosomal RNA gene, pa... 40 4.8
31ref|NM_004995.2| Homo sapiens matrix metallopeptidase 14 (membra... 40 4.8
32gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.8
33dbj|AK161560.1| Mus musculus adult male pituitary gland cDNA, RI... 40 4.8
34emb|AJ492637.1|AFA492637 Adinauclea fagifolia ITS1, 5.8S rRNA ge... 40 4.8
35gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 4.8
36dbj|AK042206.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 4.8
37dbj|AK044582.1| Mus musculus adult retina cDNA, RIKEN full-lengt... 40 4.8
38tpg|BK001349.1| TPA: TPA_exp: Mus musculus HMT1 hnRNP methyltran... 40 4.8
39dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
40ref|XM_237998.3| PREDICTED: Rattus norvegicus similar to Protein... 40 4.8
41ref|XM_575676.1| PREDICTED: Rattus norvegicus similar to HMT1 hn... 40 4.8
42dbj|AP005839.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
43dbj|AP006156.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.8
44gb|AC127373.3| Mus musculus BAC clone RP23-42M8 from 6, complete... 40 4.8
45emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on ch... 40 4.8
46emb|AL135998.6|CNS01DVO Human chromosome 14 DNA sequence BAC R-1... 40 4.8
47dbj|D26512.1|HUMMTMMP Homo sapiens MT-MMP mRNA for membrane-type... 40 4.8
48gb|AC145568.4| Mus musculus BAC clone RP24-473H20 from 6, comple... 40 4.8
49gb|BC007129.1| Mus musculus LIM motif-containing protein kinase ... 40 4.8
50emb|AL683803.9| Mouse DNA sequence from clone RP23-448D15 on chr... 40 4.8
51emb|AL713875.14| Mouse DNA sequence from clone RP23-17N7 on chro... 40 4.8
52emb|AL732451.8| Mouse DNA sequence from clone RP23-85G19 on chro... 40 4.8
53emb|X90925.1|HSMTMMPPR H.sapiens mRNA for MT-MMP protein 40 4.8
54emb|Z48481.1|HSMMPM1 H.sapiens mRNA for membrane-type matrix met... 40 4.8
55dbj|AB008118.1| Mus musculus Limk-2 gene, exon 1a 40 4.8 
>gb|AC109283.8| Mus musculus chromosome 1, clone RP24-156F3, complete sequence
          Length = 133845

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 293   attctggatgcatctatgacat 314
             ||||||||||||||||||||||
Sbjct: 90689 attctggatgcatctatgacat 90668
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>gb|AC122773.8| Mus musculus chromosome 1, clone RP24-160N7, complete sequence
          Length = 142124

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 293   attctggatgcatctatgacat 314
             ||||||||||||||||||||||
Sbjct: 53560 attctggatgcatctatgacat 53539
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>gb|AC087552.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0519E07,
              complete sequence
          Length = 151399

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 176    cagcagcgcctccctccctccc 197
              ||||||||||||||||||||||
Sbjct: 149469 cagcagcgcctccctccctccc 149490
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>gb|AC078834.5| Homo sapiens BAC clone RP11-69O3 from 7, complete sequence
          Length = 154737

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 184   cctccctccctcccgccccggcgcgg 209
             ||||| ||||||||||||||||||||
Sbjct: 95957 cctccttccctcccgccccggcgcgg 95982
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>gb|AY422195.1| Homo sapiens sonic hedgehog homolog (Drosophila) (SHH) gene, complete
             cds
          Length = 13414

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 184   cctccctccctcccgccccggcgcgg 209
             ||||| ||||||||||||||||||||
Sbjct: 10124 cctccttccctcccgccccggcgcgg 10099
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>gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159902

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 184   cctccctccctcccgccccggc 205
             ||||||||||||||||||||||
Sbjct: 40488 cctccctccctcccgccccggc 40509
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 176     cagcagcgcctccctccctccc 197
               ||||||||||||||||||||||
Sbjct: 2056600 cagcagcgcctccctccctccc 2056621
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>gb|AC147335.2| Pan troglodytes BAC clone RP43-4C1 from chromosome 7, complete sequence
          Length = 186272

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 184   cctccctccctcccgccccggcgcgg 209
             ||||| ||||||||||||||||||||
Sbjct: 26825 cctccttccctcccgccccggcgcgg 26800
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>dbj|AK100498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099E10, full
           insert sequence
          Length = 1623

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 176 cagcagcgcctccctccctccc 197
           ||||||||||||||||||||||
Sbjct: 67  cagcagcgcctccctccctccc 46
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>dbj|AK059282.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-D05, full
           insert sequence
          Length = 1671

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 176 cagcagcgcctccctccctccc 197
           ||||||||||||||||||||||
Sbjct: 112 cagcagcgcctccctccctccc 91
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>gb|AC002484.1|AC002484 Human cosmid clone LL157A05 from 7q36, complete sequence
          Length = 48469

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 184   cctccctccctcccgccccggcgcgg 209
             ||||| ||||||||||||||||||||
Sbjct: 10341 cctccttccctcccgccccggcgcgg 10366
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>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08,
             complete sequence
          Length = 112268

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 176   cagcagcgcctccctccctccc 197
             ||||||||||||||||||||||
Sbjct: 23441 cagcagcgcctccctccctccc 23462
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>ref|XM_513678.1| PREDICTED: Pan troglodytes similar to Sodium/potassium-transporting
           ATPase alpha-1 chain precursor (Sodium pump 1) (Na+/K+
           ATPase 1) (LOC457151), mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 184 cctccctccctcccgccccg 203
           ||||||||||||||||||||
Sbjct: 107 cctccctccctcccgccccg 126
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>gb|AY795074.1| Homo sapiens matrix metalloproteinase 14 (membrane-inserted) (MMP14)
             gene, complete cds
          Length = 14661

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 182   cgcctccctccctcccgccccggc 205
             ||||||||||||||| ||||||||
Sbjct: 11341 cgcctccctccctcctgccccggc 11364
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>gb|AC102240.12| Mus musculus chromosome 18, clone RP24-122C12, complete sequence
          Length = 172481

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    cagcagcgcctccctccctc 195
              ||||||||||||||||||||
Sbjct: 153808 cagcagcgcctccctccctc 153827
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>gb|AF026198.1| Fugu rubripes neural cell adhesion molecule L1 homolog (L1-CAM) gene,
            complete cds; putative protein 1 (PUT1) gene, partial
            cds; mitosis-specific chromosome segregation protein SMC1
            homolog (SMC1) gene, complete cds; and calcium channel
            alpha-1 subunit homolog (CCA1) and putative protein 2
            (PUT2) genes, partial cds, complete sequence
          Length = 63155

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  gcagcgcctccctccctccc 197
            ||||||||||||||||||||
Sbjct: 7571 gcagcgcctccctccctccc 7552
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>gb|AC100986.9| Mus musculus chromosome 3, clone RP23-77E5, complete sequence
          Length = 112141

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   gcagcgcctccctccctccc 197
             ||||||||||||||||||||
Sbjct: 41125 gcagcgcctccctccctccc 41144
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>ref|NM_010718.3| Mus musculus LIM motif-containing protein kinase 2 (Limk2),
           transcript variant 1, mRNA
          Length = 4448

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 ccacccggcagcagcgcctc 187
           ||||||||||||||||||||
Sbjct: 145 ccacccggcagcagcgcctc 126
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>gb|AC157910.4| Mus musculus chromosome 18, clone RP24-372A6, complete sequence
          Length = 180725

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   cagcagcgcctccctccctc 195
             ||||||||||||||||||||
Sbjct: 80242 cagcagcgcctccctccctc 80261
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>gb|AC165348.3| Mus musculus BAC clone RP23-300C11 from chromosome 3, complete sequence
          Length = 198637

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   gcagcgcctccctccctccc 197
             ||||||||||||||||||||
Sbjct: 27930 gcagcgcctccctccctccc 27911
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>gb|BC039581.1| Homo sapiens matrix metallopeptidase 14 (membrane-inserted), mRNA
            (cDNA clone IMAGE:6048471), containing frame-shift errors
          Length = 2774

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 182  cgcctccctccctcccgccccggc 205
            ||||||||||||||| ||||||||
Sbjct: 1989 cgcctccctccctcctgccccggc 2012
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>gb|AC121884.3| Mus musculus BAC clone RP24-138L20 from chromosome 15, complete sequence
          Length = 204711

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    cctccctccctcccgccccg 203
              ||||||||||||||||||||
Sbjct: 136527 cctccctccctcccgccccg 136546
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>gb|AC005911.6| Homo sapiens 12 BAC RP11-372B4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 100701

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 185   ctccctccctcccgccccggcgcg 208
             |||||||||||||||| |||||||
Sbjct: 17135 ctccctccctcccgccgcggcgcg 17112
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>gb|BC064803.1| Homo sapiens matrix metallopeptidase 14 (membrane-inserted), mRNA
            (cDNA clone MGC:64960 IMAGE:6046773), complete cds
          Length = 2912

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 182  cgcctccctccctcccgccccggc 205
            ||||||||||||||| ||||||||
Sbjct: 2127 cgcctccctccctcctgccccggc 2150
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>ref|NM_201441.1| Homo sapiens TEA domain family member 4 (TEAD4), transcript variant
           2, mRNA
          Length = 1651

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 185 ctccctccctcccgccccggcgcg 208
           |||||||||||||||| |||||||
Sbjct: 26  ctccctccctcccgccgcggcgcg 49
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>ref|NM_003213.2| Homo sapiens TEA domain family member 4 (TEAD4), transcript variant
           1, mRNA
          Length = 1780

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 185 ctccctccctcccgccccggcgcg 208
           |||||||||||||||| |||||||
Sbjct: 26  ctccctccctcccgccgcggcgcg 49
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>emb|BX051744.1|CNS09C38 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC29AH12 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 324

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 cctccctccctcccgccccg 203
           ||||||||||||||||||||
Sbjct: 295 cctccctccctcccgccccg 276
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>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    cggcgcggccggtcccgccg 221
              ||||||||||||||||||||
Sbjct: 263869 cggcgcggccggtcccgccg 263888
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>gb|AY101179.1| Homo sapiens related transcription enhancer factor 1B mRNA,
           complete cds
          Length = 1658

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 185 ctccctccctcccgccccggcgcg 208
           |||||||||||||||| |||||||
Sbjct: 26  ctccctccctcccgccgcggcgcg 49
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>gb|DQ028426.1| Streptosiphon hirsutus 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 311

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 180 agcgcctccctccctcccgccccg 203
           ||||||| ||||||||||||||||
Sbjct: 185 agcgcctgcctccctcccgccccg 208
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>ref|NM_004995.2| Homo sapiens matrix metallopeptidase 14 (membrane-inserted) (MMP14),
            mRNA
          Length = 3558

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 182  cgcctccctccctcccgccccggc 205
            ||||||||||||||| ||||||||
Sbjct: 2142 cgcctccctccctcctgccccggc 2165
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 201     ccggcgcggccggtcccgcc 220
               ||||||||||||||||||||
Sbjct: 2029315 ccggcgcggccggtcccgcc 2029334
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>dbj|AK161560.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length
           enriched library, clone:5330410M05 product:hypothetical
           protein, full insert sequence
          Length = 4283

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 ccacccggcagcagcgcctc 187
           ||||||||||||||||||||
Sbjct: 48  ccacccggcagcagcgcctc 29
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>emb|AJ492637.1|AFA492637 Adinauclea fagifolia ITS1, 5.8S rRNA gene and ITS2, clone Ad6
          Length = 613

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 184 cctccctccctcccgccccggcgc 207
           ||||||||||||||| ||||||||
Sbjct: 73  cctccctccctcccgtcccggcgc 96
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    ccgccgcccgcagccacgcc 235
              ||||||||||||||||||||
Sbjct: 355792 ccgccgcccgcagccacgcc 355773
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>dbj|AK042206.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630071C09 product:unclassifiable, full
           insert sequence
          Length = 1257

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 ccacccggcagcagcgcctc 187
           ||||||||||||||||||||
Sbjct: 59  ccacccggcagcagcgcctc 40
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>dbj|AK044582.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930024P04 product:unclassifiable, full insert
           sequence
          Length = 1647

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 ccacccggcagcagcgcctc 187
           ||||||||||||||||||||
Sbjct: 62  ccacccggcagcagcgcctc 43
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>tpg|BK001349.1| TPA: TPA_exp: Mus musculus HMT1 hnRNP methyltransferase-like 3
           protein (Hrmt1l3) mRNA, complete cds
          Length = 2411

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 182 cgcctccctccctcccgccc 201
           ||||||||||||||||||||
Sbjct: 111 cgcctccctccctcccgccc 130
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 178     gcagcgcctccctccctccc 197
               ||||||||||||||||||||
Sbjct: 6933782 gcagcgcctccctccctccc 6933763
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>ref|XM_237998.3| PREDICTED: Rattus norvegicus similar to Protein C9orf10 (predicted)
           (LOC291019), mRNA
          Length = 5401

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 195 cccgccccggcgcggccggtcccgccgcccgc 226
           ||||||||| ||| ||||| ||||||||||||
Sbjct: 424 cccgccccgccgccgccggccccgccgcccgc 455
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>ref|XM_575676.1| PREDICTED: Rattus norvegicus similar to HMT1 hnRNP
            methyltransferase-like 3 protein (LOC500325), mRNA
          Length = 4095

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 182  cgcctccctccctcccgccc 201
            ||||||||||||||||||||
Sbjct: 2342 cgcctccctccctcccgccc 2361
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>dbj|AP005839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:OSJNBa0044K01
          Length = 160643

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  gcagcgcctccctccctccc 197
            ||||||||||||||||||||
Sbjct: 4953 gcagcgcctccctccctccc 4934
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>dbj|AP006156.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1043F11
          Length = 167137

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    gcagcgcctccctccctccc 197
              ||||||||||||||||||||
Sbjct: 161677 gcagcgcctccctccctccc 161658
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>gb|AC127373.3| Mus musculus BAC clone RP23-42M8 from 6, complete sequence
          Length = 233833

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    cgcctccctccctcccgccc 201
              ||||||||||||||||||||
Sbjct: 207589 cgcctccctccctcccgccc 207570
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>emb|CT009662.23| Mouse DNA sequence from clone CH29-511O15 on chromosome 17, complete
             sequence
          Length = 231197

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   gcagcgcctccctccctccc 197
             ||||||||||||||||||||
Sbjct: 83564 gcagcgcctccctccctccc 83545
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>emb|AL135998.6|CNS01DVO Human chromosome 14 DNA sequence BAC R-137H15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 165871

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 182   cgcctccctccctcccgccccggc 205
             ||||||||||||||| ||||||||
Sbjct: 58986 cgcctccctccctcctgccccggc 58963
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>dbj|D26512.1|HUMMTMMP Homo sapiens MT-MMP mRNA for membrane-type matrix metalloproteinase,
            comlete cds
          Length = 3403

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 182  cgcctccctccctcccgccccggc 205
            ||||||||||||||| ||||||||
Sbjct: 2020 cgcctccctccctcctgccccggc 2043
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>gb|AC145568.4| Mus musculus BAC clone RP24-473H20 from 6, complete sequence
          Length = 201210

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   cgcctccctccctcccgccc 201
             ||||||||||||||||||||
Sbjct: 12785 cgcctccctccctcccgccc 12766
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>gb|BC007129.1| Mus musculus LIM motif-containing protein kinase 2, mRNA (cDNA
           clone MGC:5783 IMAGE:3496836), complete cds
          Length = 3375

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 ccacccggcagcagcgcctc 187
           ||||||||||||||||||||
Sbjct: 91  ccacccggcagcagcgcctc 72
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>emb|AL683803.9| Mouse DNA sequence from clone RP23-448D15 on chromosome X, complete
            sequence
          Length = 93337

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 184  cctccctccctcccgccccg 203
            ||||||||||||||||||||
Sbjct: 4837 cctccctccctcccgccccg 4818
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>emb|AL713875.14| Mouse DNA sequence from clone RP23-17N7 on chromosome 11, complete
             sequence
          Length = 201123

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   ccacccggcagcagcgcctc 187
             ||||||||||||||||||||
Sbjct: 62753 ccacccggcagcagcgcctc 62772
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>emb|AL732451.8| Mouse DNA sequence from clone RP23-85G19 on chromosome X, complete
              sequence
          Length = 213822

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 179    cagcgcctccctccctcccgcccc 202
              ||||||||||| ||||||||||||
Sbjct: 195007 cagcgcctccccccctcccgcccc 195030
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>emb|X90925.1|HSMTMMPPR H.sapiens mRNA for MT-MMP protein
          Length = 2369

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 182  cgcctccctccctcccgccccggc 205
            ||||||||||||||| ||||||||
Sbjct: 2020 cgcctccctccctcctgccccggc 2043
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>emb|Z48481.1|HSMMPM1 H.sapiens mRNA for membrane-type matrix metalloproteinase 1
          Length = 3437

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 182  cgcctccctccctcccgccccggc 205
            ||||||||||||||| ||||||||
Sbjct: 2021 cgcctccctccctcctgccccggc 2044
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>dbj|AB008118.1| Mus musculus Limk-2 gene, exon 1a
          Length = 714

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 168 ccacccggcagcagcgcctc 187
           ||||||||||||||||||||
Sbjct: 463 ccacccggcagcagcgcctc 444


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,237,137
Number of Sequences: 3902068
Number of extensions: 2237137
Number of successful extensions: 259208
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 258739
Number of HSP's gapped (non-prelim): 464
length of query: 361
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 339
effective length of database: 17,147,199,772
effective search space: 5812900722708
effective search space used: 5812900722708
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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