>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                          
Query: 112    tggttatagcaggtttaattcttctgaaacgacagttcagtcttctaagtattctgttcc 171
              ||||||||| | | ||||||||| |||||| || ||||||||| ||||| |||||| |||
Sbjct: 695551 tggttatagtatgcttaattcttttgaaaccactgttcagtctactaagcattctgctcc 695610

                      
Query: 172    agaaaggg 179
              ||||||||
Sbjct: 695611 agaaaggg 695618



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 373    tagtttacaagcaggttctgtaaaggatttggattcgagg 412
              ||||||||||||||||||||  |||||| || ||||||||
Sbjct: 695938 tagtttacaagcaggttctgggaaggatctgaattcgagg 695977

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                          
Query: 112    tggttatagcaggtttaattcttctgaaacgacagttcagtcttctaagtattctgttcc 171
              ||||||||| | | ||||||||| |||||| || ||||||||| ||||| |||||| |||
Sbjct: 695549 tggttatagtatgcttaattcttttgaaaccactgttcagtctactaagcattctgctcc 695608

                      
Query: 172    agaaaggg 179
              ||||||||
Sbjct: 695609 agaaaggg 695616



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 373    tagtttacaagcaggttctgtaaaggatttggattcgagg 412
              ||||||||||||||||||||  |||||| || ||||||||
Sbjct: 695936 tagtttacaagcaggttctgggaaggatctgaattcgagg 695975

>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0005F16, complete sequence
          Length = 160053

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%)
 Strand = Plus / Plus

                                                                         
Query: 112   tggttatagcaggtttaattcttctgaaacgacagttcagtcttctaagtattctgttcc 171
             ||||||||| | | ||||||||| |||||| || ||||||||| ||||| |||||| |||
Sbjct: 81432 tggttatagtatgcttaattcttttgaaaccactgttcagtctactaagcattctgctcc 81491

                     
Query: 172   agaaaggg 179
             ||||||||
Sbjct: 81492 agaaaggg 81499



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 373   tagtttacaagcaggttctgtaaaggatttggattcgagg 412
             ||||||||||||||||||||  |||||| || ||||||||
Sbjct: 81819 tagtttacaagcaggttctgggaaggatctgaattcgagg 81858

>gb|AC115904.13| Mus musculus chromosome 16, clone RP24-472P22, complete sequence
          Length = 167938

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 298  aagttgtagtgggcagaataat 319
            ||||||||||||||||||||||
Sbjct: 9507 aagttgtagtgggcagaataat 9486

>gb|AC157596.5| Mus musculus BAC clone RP23-240B9 from chromosome 16, complete sequence
          Length = 204275

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 298    aagttgtagtgggcagaataat 319
              ||||||||||||||||||||||
Sbjct: 136859 aagttgtagtgggcagaataat 136838

>gb|AC087439.6| Homo sapiens chromosome 8, clone GS1-251I9, complete sequence
          Length = 150235

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 25    agttagaagtagtaaaacaaaa 46
             ||||||||||||||||||||||
Sbjct: 91763 agttagaagtagtaaaacaaaa 91742

>emb|AL162580.20| Human DNA sequence from clone RP11-524A17 on chromosome 6 Contains a
             novel gene and a protein phosphatase 1 regulatory
             (inhibitor) subunit 14A (PPP1R14A) pseudogene, complete
             sequence
          Length = 171483

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 116   tatagcaggtttaattcttct 136
             |||||||||||||||||||||
Sbjct: 79126 tatagcaggtttaattcttct 79106

>emb|AL954772.23| Zebrafish DNA sequence from clone CH211-262E4, complete sequence
          Length = 174414

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 71    aacagctcaaatgtggatttg 91
             |||||||||||||||||||||
Sbjct: 96002 aacagctcaaatgtggatttg 96022

>gb|AC020559.4|AC020559 Homo sapiens BAC clone RP11-527F13 from 6, complete sequence
          Length = 194079

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 116  tatagcaggtttaattcttct 136
            |||||||||||||||||||||
Sbjct: 1493 tatagcaggtttaattcttct 1473

>gb|AY421761.1| Human coxsackievirus A3 strain Olson, complete genome
          Length = 7395

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 153  cttctaagtattctgttcca 172
            ||||||||||||||||||||
Sbjct: 6248 cttctaagtattctgttcca 6229

>emb|AL590115.7| Human DNA sequence from clone RP11-255O17 on chromosome 1 Contains a
             novel gene, the LHX9 gene for LIM homeobox 9 and a CpG
             island, complete sequence
          Length = 182527

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   tgtagtgggcagaataatgt 321
             ||||||||||||||||||||
Sbjct: 48247 tgtagtgggcagaataatgt 48228

>emb|Y18169.1|PSA18169 Pisum sativum mitochondrial ccb248 gene and partial rps7 gene
          Length = 1801

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 394 aaaggatttggattcgaggc 413
           ||||||||||||||||||||
Sbjct: 94  aaaggatttggattcgaggc 113

>gb|AC097502.3| Homo sapiens BAC clone RP11-340B18 from 4, complete sequence
          Length = 168254

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   ttgtagtgggcagaataatg 320
             ||||||||||||||||||||
Sbjct: 29170 ttgtagtgggcagaataatg 29189

>gb|AC124172.4| Mus musculus BAC clone RP23-168P24 from chromosome 1, complete sequence
          Length = 192946

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tagaagtagtaaaacaaaat 47
             ||||||||||||||||||||
Sbjct: 20576 tagaagtagtaaaacaaaat 20557

>emb|BX545855.16| Zebrafish DNA sequence from clone CH211-212N6 in linkage group 9,
             complete sequence
          Length = 204962

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 34    tagtaaaacaaaattggcag 53
             ||||||||||||||||||||
Sbjct: 38597 tagtaaaacaaaattggcag 38578

>gb|L09214.1|SOYMTTI Glycine max mitochondrial DNA sequence, transcription initiation
           motif
          Length = 1496

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 394 aaaggatttggattcgaggc 413
           ||||||||||||||||||||
Sbjct: 208 aaaggatttggattcgaggc 227


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,263,195
Number of Sequences: 3902068
Number of extensions: 4263195
Number of successful extensions: 72057
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71977
Number of HSP's gapped (non-prelim): 80
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)