>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein|
          Length = 2480

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 12/50 (24%)
 Frame = +3

Query: 216  PQEEGALQNSSEGKIQAPELK------------PLAGSQAVPKTEGVSTP 329
            P+ EG  Q  SEG I+APE +            P A  +A P+ EGV TP
Sbjct: 2263 PEAEGEAQPESEG-IEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETP 2311

>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)|
          Length = 1601

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +3

Query: 150  DLARRLPVTPRELGFTPFRNP------PPQEEGALQNSSEGKIQAPELKPLAGSQAVPKT 311
            +LA +LP     +GF P +NP      PP ++    N+     Q+ + K + G Q+ P  
Sbjct: 1311 ELAPKLPTLAPFVGFNPLQNPAAGKKVPPSKKS--PNAGAAAHQSGQQKLVNGGQSQPAQ 1368

Query: 312  EGVSTP 329
            +  S P
Sbjct: 1369 QKTSPP 1374

>AEX3_CAEEL (O02626) Regulator of presynaptic activity aex-3 (Aboc, expulsion|
            defective protein 3)
          Length = 1409

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 24/58 (41%), Positives = 25/58 (43%)
 Frame = +3

Query: 168  PVTPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISLV 341
            PV PRE    P RNPPP   GA     EG    P L P      V  T    TP +LV
Sbjct: 967  PVPPREAPPIPKRNPPPL--GAPPKVPEGARAPPPLPP---RPKVKTTAVDETPQNLV 1019

>B3A2_HUMAN (P04920) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (BND3L)
          Length = 1241

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 174 TPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISL 338
           TP+  G  P R P     G      EG+    E     G++A+ +   VSTP S+
Sbjct: 98  TPQGPGRKPRRRPGASPTGETPTIEEGEEDEDEASEAEGARALTQPSPVSTPSSV 152

>SMO_MOUSE (P56726) Smoothened homolog precursor (SMO)|
          Length = 793

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 153 LARRLPVTPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAG 290
           +ARR  + P+++  TP   P P EE A     E +I +PEL+   G
Sbjct: 630 VARRGAILPQDVSVTPVATPVPPEEQANMWLVEAEI-SPELEKRLG 674

>MSH5_YEAST (Q12175) MutS protein homolog 5|
          Length = 901

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -3

Query: 329 RCADALGFWNSLRSGK 282
           RC DA GF N LRSGK
Sbjct: 337 RCPDAFGFINQLRSGK 352

>B3A2_RABIT (P48746) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +3

Query: 174 TPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISL 338
           TP+  G  P R P     GA     EG+    E     G++A  +    STP S+
Sbjct: 98  TPQGPGRKPRRRPGASPTGATPTIEEGEEDEEEANEAEGARAPTEPSPASTPSSV 152

>KRH2_DROME (Q9V447) Protein Kr-h2|
          Length = 276

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = +3

Query: 213 PPQEEGALQNSSEGKIQAPELKPLAGSQAVP 305
           PP+ EGA  NSSE   Q  E    + SQ VP
Sbjct: 8   PPRSEGAQTNSSERSSQQQEQPQQSQSQNVP 38

>SMO_HUMAN (Q99835) Smoothened homolog precursor (SMO) (Gx protein)|
          Length = 787

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 153 LARRLPVTPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAG 290
           +ARR  + P+++  TP   P P EE A     E +I +PEL+   G
Sbjct: 626 VARRGAILPQDISVTPVATPVPPEEQANLWLVEAEI-SPELQKRLG 670

>SMO_RAT (P97698) Smoothened homolog precursor (SMO)|
          Length = 793

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +3

Query: 153 LARRLPVTPRELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAG 290
           +ARR  + P+++  TP   P P EE A     E +I +PEL+   G
Sbjct: 630 VARRGAILPQDVSVTPVATPVPPEEQANLWLVEAEI-SPELEKRLG 674

>SFR14_MOUSE (Q8CH09) Putative splicing factor, arginine/serine-rich 14|
           (Arginine/serine-rich splicing factor 14)
          Length = 1067

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 210 PPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVSTPISL 338
           P  +EE   ++  EG  +   L+P AG+   P +EG S   S+
Sbjct: 867 PEEEEEDEEESEDEGGEETSTLRPQAGAAKCPGSEGSSPTDSI 909

>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1691

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 183 ELGFTPFRNPPPQEEGALQNSSEGKIQAPELKPLAGSQAVPKTEGVS 323
           E+      +P P E GAL+ S++  ++  E  P A        +G+S
Sbjct: 662 EMSLIQMPDPEPHESGALEKSTKEAVEEKEQIPAAMQDVAAGQDGLS 708


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,713,588
Number of Sequences: 219361
Number of extensions: 707920
Number of successful extensions: 2128
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2125
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 1402043640
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)