Clone Information

BLAST Search Result

Clone Name	bastl17f09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_481188.1\| Oryza sativa (japonica cultivar-group), mRNA	42	1.3
2	ref\|XM_470672.1\| Oryza sativa (japonica cultivar-group), mRNA	42	1.3
3	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	42	1.3
4	gb\|AC119848.8\| Mus musculus chromosome 7, clone RP23-73B20, comp...	42	1.3
5	emb\|AL365445.11\| Human DNA sequence from clone RP4-796B4 on chro...	42	1.3
6	emb\|BX572595.1\| Rhodopseudomonas palustris CGA009 complete genom...	42	1.3
7	emb\|AL671560.7\| Mouse DNA sequence from clone RP23-149A5 on chro...	42	1.3
8	dbj\|AK003078.1\| Mus musculus adult male spleen cDNA, RIKEN full-...	42	1.3
9	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.3
10	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.3
11	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.3
12	gb\|AC087220.9\| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genom...	42	1.3
13	dbj\|AP004070.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.3
14	dbj\|AP005731.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.3
15	dbj\|AP005163.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.3
16	emb\|AJ330986.1\|HSA330986 Homo sapiens genomic sequence surroundi...	42	1.3
17	gb\|AC120854.15\| Mus musculus chromosome 7, clone RP23-329B6, com...	42	1.3
18	gb\|AC139867.4\| Mus musculus BAC clone RP23-430P22 from chromosom...	40	5.1
19	gb\|AC134344.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.1
20	gb\|AC136224.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.1
21	gb\|CP000010.1\| Burkholderia mallei ATCC 23344 chromosome 1, comp...	40	5.1
22	gb\|CP000124.1\| Burkholderia pseudomallei 1710b chromosome I, com...	40	5.1
23	gb\|CP000075.1\| Pseudomonas syringae pv. syringae B728a, complete...	40	5.1
24	gb\|AC122118.7\| Mus musculus chromosome 18, clone RP24-225P17, co...	40	5.1
25	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	40	5.1
26	gb\|AC129078.6\| Mus musculus BAC clone RP24-71C5 from chromosome ...	40	5.1
27	gb\|AC116656.5\| Mus musculus BAC clone RP23-10A7 from chromosome ...	40	5.1
28	gb\|AC101810.5\| Mus musculus chromosome 15, clone RP24-278M16, co...	40	5.1
29	gb\|CP000283.1\| Rhodopseudomonas palustris BisB5, complete genome	40	5.1
30	gb\|AC026231.4\| Mus musculus strain C57BL6/J chromosome 5 clone R...	40	5.1
31	emb\|BX571965.1\| Burkholderia pseudomallei strain K96243, chromos...	40	5.1
32	emb\|AL939117.1\|SCO939117 Streptomyces coelicolor A3(2) complete ...	40	5.1
33	dbj\|BS000602.1\| Pan troglodytes chromosome Y clone:PTB-547B05, c...	40	5.1
34	gb\|DP000054.1\| Pan troglodytes chromosome Y, partial sequence	40	5.1
35	gb\|AY740398.1\|AY740398S1 Aegilops tauschii starch branching enzy...	40	5.1
36	gb\|AF449411.1\| Myxococcus xanthus cosmid pREG3E1, complete sequence	40	5.1
37	gb\|CP000249.1\| Frankia sp. CcI3, complete genome	40	5.1
38	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.1
39	gb\|AC147670.4\| Pan troglodytes BAC clone CH251-94F1 from chromos...	40	5.1
40	gb\|AC151848.4\| Pan troglodytes BAC clone CH251-346F2 from chromo...	40	5.1
41	gb\|AC133645.5\| Mus musculus BAC clone RP23-73O10 from chromosome...	40	5.1
42	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	5.1
43	gb\|AF463669.1\| Mus musculus strain C57BL/6J cytokine gene cluste...	40	5.1
44	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	5.1
45	gb\|AC018767.3\|AC018767 Homo sapiens chromosome 16 clone RP11-279...	40	5.1
46	dbj\|AB181127.1\| Rhodococcus sp. DFA3 ORF2S, flnR, flnB, dbfA1 ge...	40	5.1
47	gb\|AC018769.2\|AC018769 Homo sapiens chromosome 16 clone RP11-568...	40	5.1
48	emb\|AL132711.5\|CNS01DTC Human chromosome 14 DNA sequence BAC R-5...	40	5.1
49	gb\|CP000086.1\| Burkholderia thailandensis E264 chromosome I, com...	40	5.1
50	gb\|AC132353.3\| Mus musculus BAC clone RP24-100I23 from 17, compl...	40	5.1
51	gb\|AC004490.1\|AC004490 Homo sapiens chromosome 19, cosmid R29381...	40	5.1
52	gb\|AC135290.5\| Mus musculus BAC clone RP23-58D13 from 18, comple...	40	5.1
53	dbj\|AP006840.1\| Symbiobacterium thermophilum IAM 14863 DNA, comp...	40	5.1
54	gb\|AC156573.3\| Mus musculus BAC clone RP23-133P6 from chromosome...	40	5.1
55	emb\|AL807814.5\| Mouse DNA sequence from clone RP23-392I19 on chr...	40	5.1
56	emb\|AL928667.4\| Mouse DNA sequence from clone RP23-139J18 on chr...	40	5.1
57	emb\|AL669895.9\| Mouse DNA sequence from clone RP23-31N7 on chrom...	40	5.1
58	emb\|AL672004.12\| Mouse DNA sequence from clone RP23-200C21 on ch...	40	5.1

>ref|XM_481188.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1608

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 111 gccaccgccgcgacgccgcgc 131
           |||||||||||||||||||||
Sbjct: 127 gccaccgccgcgacgccgcgc 107

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>ref|XM_470672.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1083

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 107 gccggccaccgccgcgacgccgcgc 131
           |||||||||||||||| ||||||||
Sbjct: 471 gccggccaccgccgcgccgccgcgc 447

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 107      gccggccaccgccgcgacgccgcgc 131
                |||||||||||||||| ||||||||
Sbjct: 14422613 gccggccaccgccgcgccgccgcgc 14422589

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>gb|AC119848.8| Mus musculus chromosome 7, clone RP23-73B20, complete sequence
          Length = 239297

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 35     cccactctctctcccccaccctccgcctc 63
              |||||||||||| ||||||||||| ||||
Sbjct: 117062 cccactctctcttccccaccctccacctc 117090

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>emb|AL365445.11| Human DNA sequence from clone RP4-796B4 on chromosome 1p32.1-33
             Contains a novel pseudogene (FLJ40434), the DMRTB1 gene
             for DMRT-like family B with proline-rich C-terminal, 1 and
             two CpG islands, complete sequence
          Length = 106438

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    actctctctcccccaccctcc 58
             |||||||||||||||||||||
Sbjct: 92677 actctctctcccccaccctcc 92697

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>emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genome; segment 3/16
          Length = 349260

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 101    atcgacgccggccaccgccgcgacg 125
              ||||||||||||||| |||||||||
Sbjct: 139398 atcgacgccggccacggccgcgacg 139422

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>emb|AL671560.7| Mouse DNA sequence from clone RP23-149A5 on chromosome 1 Contains the
             3' end of the Nrp2 gene for neuropilin 2, complete
             sequence
          Length = 157987

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 35    cccactctctctcccccaccc 55
             |||||||||||||||||||||
Sbjct: 63469 cccactctctctcccccaccc 63449

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>dbj|AK003078.1| Mus musculus adult male spleen cDNA, RIKEN full-length enriched
           library, clone:0910001J09 product:ubiquitin carrier
           protein E2 homolog [Homo sapiens], full insert sequence
          Length = 1001

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 35  cccactctctctcccccaccc 55
           |||||||||||||||||||||
Sbjct: 952 cccactctctctcccccaccc 932

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 111      gccaccgccgcgacgccgcgc 131
                |||||||||||||||||||||
Sbjct: 10466780 gccaccgccgcgacgccgcgc 10466800

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 107      gccggccaccgccgcgacgccgcgc 131
                |||||||||||||||| ||||||||
Sbjct: 14417588 gccggccaccgccgcgccgccgcgc 14417564

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 107     gccggccaccgccgcgacgccgcgcaccg 135
               |||||||||||||||| |||||| |||||
Sbjct: 7474533 gccggccaccgccgcgccgccgcccaccg 7474505

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>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete
              sequence
          Length = 135594

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 107    gccggccaccgccgcgacgccgcgc 131
              |||||||||||||||| ||||||||
Sbjct: 118768 gccggccaccgccgcgccgccgcgc 118792

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>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1705_E12
          Length = 191416

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 107   gccggccaccgccgcgacgccgcgcaccg 135
             |||||||||||||||| |||||| |||||
Sbjct: 68239 gccggccaccgccgcgccgccgcccaccg 68211

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>dbj|AP005731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0091D16
          Length = 174222

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 111    gccaccgccgcgacgccgcgc 131
              |||||||||||||||||||||
Sbjct: 167738 gccaccgccgcgacgccgcgc 167758

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>dbj|AP005163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0053M06
          Length = 175416

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 111   gccaccgccgcgacgccgcgc 131
             |||||||||||||||||||||
Sbjct: 89371 gccaccgccgcgacgccgcgc 89391

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>emb|AJ330986.1|HSA330986 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-GG11RS
          Length = 694

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 353 tgcacagttggatgcacagat 373
           |||||||||||||||||||||
Sbjct: 305 tgcacagttggatgcacagat 325

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>gb|AC120854.15| Mus musculus chromosome 7, clone RP23-329B6, complete sequence
          Length = 205102

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 35  cccactctctctcccccaccctccgcctc 63
           |||||||||||| ||||||||||| ||||
Sbjct: 478 cccactctctcttccccaccctccacctc 450

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>gb|AC139867.4| Mus musculus BAC clone RP23-430P22 from chromosome 1, complete sequence
          Length = 224730

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ctctctctcccccaccctcc 58
              ||||||||||||||||||||
Sbjct: 186680 ctctctctcccccaccctcc 186661

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>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0059K16,
              complete sequence
          Length = 139615

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 103    cgacgccggccaccgccgcgacgccgcg 130
              |||||||| ||||||||||| |||||||
Sbjct: 137750 cgacgccgcccaccgccgcgccgccgcg 137777

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>gb|AC136224.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0006B22, complete sequence
          Length = 166052

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 103   cgacgccggccaccgccgcgacgccgcg 130
             |||||||| ||||||||||| |||||||
Sbjct: 56870 cgacgccgcccaccgccgcgccgccgcg 56897

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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 111  gccaccgccgcgacgccgcgcaccggccccgc 142
            ||||||||||||||||||| | ||||| ||||
Sbjct: 8992 gccaccgccgcgacgccgcccgccggcgccgc 9023

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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 111    gccaccgccgcgacgccgcgcaccggccccgc 142
              ||||||||||||||||||| | ||||| ||||
Sbjct: 812790 gccaccgccgcgacgccgcccgccggcgccgc 812821

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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 106     cgccggccaccgccgcgacgccgc 129
               |||||||| |||||||||||||||
Sbjct: 5720166 cgccggccgccgccgcgacgccgc 5720189

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>gb|AC122118.7| Mus musculus chromosome 18, clone RP24-225P17, complete sequence
          Length = 190301

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    cccactctctctcccccaccctcc 58
             ||||||||||| ||||||||||||
Sbjct: 51330 cccactctctcacccccaccctcc 51353

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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 106     cgccggccaccgccgcgacgccgc 129
               |||||||| |||||||||||||||
Sbjct: 5515210 cgccggccgccgccgcgacgccgc 5515233

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>gb|AC129078.6| Mus musculus BAC clone RP24-71C5 from chromosome 18, complete sequence
          Length = 215826

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 35    cccactctctctcccccaccctcc 58
             ||||||||||| ||||||||||||
Sbjct: 48500 cccactctctcacccccaccctcc 48477

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>gb|AC116656.5| Mus musculus BAC clone RP23-10A7 from chromosome 15, complete sequence
          Length = 198019

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ccaaattcaaaacccactct 42
             ||||||||||||||||||||
Sbjct: 50375 ccaaattcaaaacccactct 50394

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>gb|AC101810.5| Mus musculus chromosome 15, clone RP24-278M16, complete sequence
          Length = 178304

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     ccaaattcaaaacccactct 42
              ||||||||||||||||||||
Sbjct: 171955 ccaaattcaaaacccactct 171974

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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 116     cgccgcgacgccgcgcaccg 135
               ||||||||||||||||||||
Sbjct: 4657191 cgccgcgacgccgcgcaccg 4657210

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>gb|AC026231.4| Mus musculus strain C57BL6/J chromosome 5 clone RP23-114F4, complete
              sequence
          Length = 208199

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ctctctctcccccaccctcc 58
              ||||||||||||||||||||
Sbjct: 179950 ctctctctcccccaccctcc 179931

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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 111    gccaccgccgcgacgccgcgcaccggccccgc 142
              ||||||||||||||||||| | ||||| ||||
Sbjct: 655196 gccaccgccgcgacgccgcccgccggcgccgc 655227

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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gacgccgcgcaccggccccg 141
              ||||||||||||||||||||
Sbjct: 202213 gacgccgcgcaccggccccg 202194

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>dbj|BS000602.1| Pan troglodytes chromosome Y clone:PTB-547B05, complete sequences
          Length = 211728

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ctctctctcccccaccctcc 58
              ||||||||||||||||||||
Sbjct: 135466 ctctctctcccccaccctcc 135447

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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ctctctctcccccaccctcc 58
              ||||||||||||||||||||
Sbjct: 827374 ctctctctcccccaccctcc 827355

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>gb|AY740398.1|AY740398S1 Aegilops tauschii starch branching enzyme IIb (SBE II-DB1) gene,
            exons 1 through 16
          Length = 14896

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 112  ccaccgccgcgacgccgcgc 131
            ||||||||||||||||||||
Sbjct: 8423 ccaccgccgcgacgccgcgc 8404

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>gb|AF449411.1| Myxococcus xanthus cosmid pREG3E1, complete sequence
          Length = 36615

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   cgccgcgcaccggccccgcc 143
             ||||||||||||||||||||
Sbjct: 34270 cgccgcgcaccggccccgcc 34289

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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 146     gccggatctcgcgcgccggctccc 169
               ||||||||||| ||||||||||||
Sbjct: 4106268 gccggatctcgggcgccggctccc 4106245

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 103      cgacgccggccaccgccgcgacgccgcg 130
                |||||||| ||||||||||| |||||||
Sbjct: 14721456 cgacgccgcccaccgccgcgccgccgcg 14721483

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>gb|AC147670.4| Pan troglodytes BAC clone CH251-94F1 from chromosome y, complete sequence
          Length = 172123

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ctctctctcccccaccctcc 58
              ||||||||||||||||||||
Sbjct: 104065 ctctctctcccccaccctcc 104046

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>gb|AC151848.4| Pan troglodytes BAC clone CH251-346F2 from chromosome y, complete
             sequence
          Length = 147582

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ctctctctcccccaccctcc 58
             ||||||||||||||||||||
Sbjct: 36501 ctctctctcccccaccctcc 36482

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>gb|AC133645.5| Mus musculus BAC clone RP23-73O10 from chromosome 5, complete sequence
          Length = 207846

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    tctctcccccaccctccgcc 61
             ||||||||||||||||||||
Sbjct: 67158 tctctcccccaccctccgcc 67177

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 71      ggccccagcggcagccgtcg 90
               ||||||||||||||||||||
Sbjct: 5464043 ggccccagcggcagccgtcg 5464024

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>gb|AF463669.1| Mus musculus strain C57BL/6J cytokine gene cluster, partial sequence
          Length = 1845

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   ctctctctcccccaccctcc 58
            ||||||||||||||||||||
Sbjct: 1773 ctctctctcccccaccctcc 1754

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 112     ccaccgccgcgacgccgcgc 131
               ||||||||||||||||||||
Sbjct: 3207759 ccaccgccgcgacgccgcgc 3207778

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>gb|AC018767.3|AC018767 Homo sapiens chromosome 16 clone RP11-279O17, complete sequence
          Length = 159857

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   gcctgagttgaagcctcttg 285
             ||||||||||||||||||||
Sbjct: 23039 gcctgagttgaagcctcttg 23058

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>dbj|AB181127.1| Rhodococcus sp. DFA3 ORF2S, flnR, flnB, dbfA1 gene for putative
            transposase, putative reguratory protein, short-chain
            dehydrogenase/reductase, angular dioxygenase large
            subunit, partial and complete cds
          Length = 4507

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  ccgcgacgccgcgcaccggc 137
            ||||||||||||||||||||
Sbjct: 1053 ccgcgacgccgcgcaccggc 1072

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>gb|AC018769.2|AC018769 Homo sapiens chromosome 16 clone RP11-568A19, complete sequence
          Length = 157613

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   gcctgagttgaagcctcttg 285
             ||||||||||||||||||||
Sbjct: 47190 gcctgagttgaagcctcttg 47171

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>emb|AL132711.5|CNS01DTC Human chromosome 14 DNA sequence BAC R-566J3 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185799

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 35     cccactctctctcccccaccctcc 58
              |||||||||||||| |||||||||
Sbjct: 102474 cccactctctctccaccaccctcc 102497

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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 111    gccaccgccgcgacgccgcgcaccggccccgc 142
              ||||||||||||||||||| | ||||| ||||
Sbjct: 564161 gccaccgccgcgacgccgcccgccggcgccgc 564192

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>gb|AC132353.3| Mus musculus BAC clone RP24-100I23 from 17, complete sequence
          Length = 202603

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 35     cccactctctctcccccaccctcc 58
              ||||||||||||||||| ||||||
Sbjct: 112299 cccactctctctccccctccctcc 112322

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>gb|AC004490.1|AC004490 Homo sapiens chromosome 19, cosmid R29381, complete sequence
          Length = 39143

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    ctctctctcccccaccctcc 58
             ||||||||||||||||||||
Sbjct: 28051 ctctctctcccccaccctcc 28070

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>gb|AC135290.5| Mus musculus BAC clone RP23-58D13 from 18, complete sequence
          Length = 233915

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 35    cccactctctctcccccaccctcc 58
             ||||||||||| ||||||||||||
Sbjct: 19586 cccactctctcacccccaccctcc 19563

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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 55      ctccgcctcatccgatggcc 74
               ||||||||||||||||||||
Sbjct: 2558566 ctccgcctcatccgatggcc 2558547



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    ggccaccgccgcgacgccgc 129
              ||||||||||||||||||||
Sbjct: 707055 ggccaccgccgcgacgccgc 707036

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>gb|AC156573.3| Mus musculus BAC clone RP23-133P6 from chromosome 15, complete sequence
          Length = 198278

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ctctctctcccccaccctcc 58
             ||||||||||||||||||||
Sbjct: 93431 ctctctctcccccaccctcc 93412

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>emb|AL807814.5| Mouse DNA sequence from clone RP23-392I19 on chromosome X, complete
              sequence
          Length = 173965

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ctctctctcccccaccctcc 58
              ||||||||||||||||||||
Sbjct: 164808 ctctctctcccccaccctcc 164789

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>emb|AL928667.4| Mouse DNA sequence from clone RP23-139J18 on chromosome 4, complete
             sequence
          Length = 121094

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    ctctctctcccccaccctcc 58
             ||||||||||||||||||||
Sbjct: 39434 ctctctctcccccaccctcc 39415

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>emb|AL669895.9| Mouse DNA sequence from clone RP23-31N7 on chromosome X, complete
             sequence
          Length = 197638

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    actctctctcccccaccctc 57
             ||||||||||||||||||||
Sbjct: 69136 actctctctcccccaccctc 69117

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>emb|AL672004.12| Mouse DNA sequence from clone RP23-200C21 on chromosome 11, complete
             sequence
          Length = 101730

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    ctctctctcccccaccctcc 58
             ||||||||||||||||||||
Sbjct: 37427 ctctctctcccccaccctcc 37446


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,137,471
Number of Sequences: 3902068
Number of extensions: 3137471
Number of successful extensions: 64696
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62969
Number of HSP's gapped (non-prelim): 1727
length of query: 379
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 357
effective length of database: 17,147,199,772
effective search space: 6121550318604
effective search space used: 6121550318604
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result