>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3|
          Length = 981

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -1

Query: 356 RVPHHQLLISRYHSLVL-----TRSRPHPPQSHCLPVPKN 252
           +V HHQLL+ +    +      + S+  PP  HC+P+P +
Sbjct: 316 KVSHHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355

>MCM7_XENLA (Q91876) DNA replication licensing factor MCM7 (CDC47 homolog)|
           (x.MCM7)
          Length = 720

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 146 NSPFSAGSEPHPLHGRDSSLKTVEGNLQAAAAMASRF 256
           N+  S  +  +P +GR +  KTVE N+Q  AA+ SRF
Sbjct: 478 NARCSILAAANPAYGRYNPKKTVEQNIQLPAALLSRF 514

>SYH_PORPU (P51348) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 430

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +3

Query: 207 RQLKVIYKQQQPWRLVFGD----RETVTLRRMWTRSSQNKGVIARNQKL 341
           +QLK  +K++    L+ GD    +ET+T++ M+T+  +N  +I    K+
Sbjct: 366 KQLKQAHKKRAIACLILGDNEIQQETITIKWMYTQEQENMSIIEFKNKI 414

>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3|
          Length = 1333

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 341  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 240
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2|
          Length = 1333

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 341  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 240
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1|
          Length = 1333

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 341  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 240
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 16/48 (33%)
 Frame = -1

Query: 350 PHHQLLISRY------HSLVLTRSRPHPPQS----------HCLPVPK 255
           PH  L +S+       HSL++TR  PH P S          +CLP+P+
Sbjct: 227 PHLNLSVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPE 274

>HEMA_CVMA5 (P31615) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein)
          Length = 428

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 258 QKRDAMAAAACKLPSTVFKLESRPWSG*GSDPAENGE 148
           ++ D M AAAC+LP   F+  S  +SG G+  A +G+
Sbjct: 309 RQSDNMTAAACQLPYCFFRNTSANYSG-GTHDAHHGD 344

>TID_DROVI (Q24331) Protein tumorous imaginal discs, mitochondrial precursor|
           (Protein lethal(2)tumorous imaginal discs) (TID58)
          Length = 529

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 24/82 (29%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
 Frame = +2

Query: 173 PHPLHG----RDSSLKTVEG--NLQAAAAMASRFWGQGXXXXXXXXXXXXXXQGSDSEKS 334
           P  +HG    +D S K   G    +  A  A R    G              +G  SEKS
Sbjct: 442 PGQIHGMAQRKDGSKKATAGASETKTDAQPAGRTADSGSQGTSRAGAETESAKGQQSEKS 501

Query: 335 EAG-----DGGRDGSKNRYLNK 385
           E        GG  GS   +LNK
Sbjct: 502 ETRRKDQQTGGESGSGGGFLNK 523

>TERM_ADE40 (P48313) DNA terminal protein (Bellett protein) (pTP protein)|
          Length = 646

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +1

Query: 49  ASVLHAAGPSTPSIH--VRCQPLSARPHPSTPP 141
           AS L A     P +H  V   PL A PHP  PP
Sbjct: 606 ASQLRAQHQPLPELHADVPLPPLQANPHPPLPP 638

>YT32_STRFR (P20185) Hypothetical 32.6 kDa protein in transposon Tn4556|
          Length = 305

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 61  HAAGPSTPSIHVRCQPLSARPHPSTPP 141
           H AGPS  S+H +   L  RP    PP
Sbjct: 111 HLAGPSAVSVHDQADVLGQRPRCRLPP 137

>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of|
           polyhomeotic 3) (Early development regulatory protein 3)
          Length = 983

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -1

Query: 356 RVPHHQLLISRYHS----LVLTRSRPHPPQS-HCLPVPKNETP 243
           +V HHQL++ +       + L  S   PP S HC+P+  +  P
Sbjct: 319 KVSHHQLILQQQQQQIQPITLQNSTQDPPPSQHCIPLQNHGLP 361

>HRG_RABIT (Q28640) Histidine-rich glycoprotein precursor|
           (Histidine-proline-rich glycoprotein) (HPRG) (Fragment)
          Length = 526

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 362 THRVPHHQLLISRYHSLVLTRSRPHPPQSH 273
           THR PHH++ ++  H        PH P  H
Sbjct: 312 THRFPHHRISVNIIHRPPPHGHHPHGPPPH 341

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 24.3 bits (51), Expect(2) = 6.7
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 87  HPRPLSAAERAAAPVYSAAPILRSP 161
           HP P + A+    P+YS +P ++ P
Sbjct: 177 HPPPPTYAQPPPTPIYSPSPQVQPP 201



 Score = 21.9 bits (45), Expect(2) = 6.7
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 62  TPPVPQHPPS 91
           TPP  QHPPS
Sbjct: 156 TPPRGQHPPS 165

>PALH_NEUCR (Q7RY98) pH-response regulator protein palH/rim-21|
          Length = 778

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 314 GSDSEKSEAGDGGRDG 361
           GSDS+ +E+G GG+DG
Sbjct: 411 GSDSQDTESGGGGKDG 426


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,890,918
Number of Sequences: 219361
Number of extensions: 783599
Number of successful extensions: 2809
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2808
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)