ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17f06 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence Length = 213888 Score = 220 bits (111), Expect = 3e-54 Identities = 144/155 (92%) Strand = Plus / Plus Query: 240 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 299 ||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| Sbjct: 185164 cagaatgctttggagcagttggcatccattgatctcattgagctatgcaaggaggccaga 185223 Query: 300 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 359 ||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 185224 attgagcgctgccgtgcaactagagacttgagtagctgtggccgctatgtgcatcatgtg 185283 Query: 360 ctcaactcatgtgggcatgcctcgttatgtgctga 394 || ||||||||||| |||||||| ||||||||||| Sbjct: 185284 cttaactcatgtggccatgcctcattatgtgctga 185318
>ref|XM_469640.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1013 Score = 218 bits (110), Expect = 1e-53 Identities = 146/158 (92%) Strand = Plus / Plus Query: 240 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 299 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 348 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 407 Query: 300 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 359 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 408 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 467 Query: 360 ctcaactcatgtgggcatgcctcgttatgtgctgagtg 397 || |||||||| |||||||| || |||||||||||||| Sbjct: 468 cttaactcatgcgggcatgcatccttatgtgctgagtg 505
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 218 bits (110), Expect = 1e-53 Identities = 146/158 (92%) Strand = Plus / Minus Query: 240 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 299 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 29930120 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 29930061 Query: 300 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 359 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 29930060 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 29930001 Query: 360 ctcaactcatgtgggcatgcctcgttatgtgctgagtg 397 || |||||||| |||||||| || |||||||||||||| Sbjct: 29930000 cttaactcatgcgggcatgcatccttatgtgctgagtg 29929963
>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete sequence Length = 159661 Score = 218 bits (110), Expect = 1e-53 Identities = 146/158 (92%) Strand = Plus / Plus Query: 240 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 299 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 80486 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 80545 Query: 300 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 359 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 80546 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 80605 Query: 360 ctcaactcatgtgggcatgcctcgttatgtgctgagtg 397 || |||||||| |||||||| || |||||||||||||| Sbjct: 80606 cttaactcatgcgggcatgcatccttatgtgctgagtg 80643
>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete sequence Length = 139946 Score = 218 bits (110), Expect = 1e-53 Identities = 146/158 (92%) Strand = Plus / Minus Query: 240 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 299 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 96061 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 96002 Query: 300 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 359 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 96001 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 95942 Query: 360 ctcaactcatgtgggcatgcctcgttatgtgctgagtg 397 || |||||||| |||||||| || |||||||||||||| Sbjct: 95941 cttaactcatgcgggcatgcatccttatgtgctgagtg 95904
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 218 bits (110), Expect = 1e-53 Identities = 146/158 (92%) Strand = Plus / Minus Query: 240 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 299 |||||||||||||||||| |||| ||||||||||||||||| || |||||||||||||| Sbjct: 30021542 cagaatgctttggagcagctggcatccattgatctcattgaactatgcaaggaggctaga 30021483 Query: 300 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 359 |||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct: 30021482 attgagcattgccgtgcaactagggacttgagtagctgtggccgctatgtgcagcatgtg 30021423 Query: 360 ctcaactcatgtgggcatgcctcgttatgtgctgagtg 397 || |||||||| |||||||| || |||||||||||||| Sbjct: 30021422 cttaactcatgcgggcatgcatccttatgtgctgagtg 30021385
>gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh1-F allele, complete cds Length = 160480 Score = 210 bits (106), Expect = 3e-51 Identities = 145/158 (91%) Strand = Plus / Plus Query: 240 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 299 |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||| ||| Sbjct: 112693 cagaatgcgttggagcagttggcatccattgatctcatcgagctatgcaaggaggccaga 112752 Query: 300 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 359 ||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 112753 attgagcgctgccgtgcaactagagacttgagtagctgtggccgctatgtgcaccatgtg 112812 Query: 360 ctcaactcatgtgggcatgcctcgttatgtgctgagtg 397 || ||||||||||| |||||||| |||||||||||||| Sbjct: 112813 cttaactcatgtggccatgcctcattatgtgctgagtg 112850
>gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, complete cds; Fourf copia_LTR and Huck gypsy_LTR retrotransposons, complete sequence; Opie2 copia_LTR retrotransposon Zeon gypsy_LTR and Opie1 copia_LTR retrotransposons, complete sequence; Ji copia_LTR retrotransposon, complete sequence; and unknown protein (adh1B), cyclin H-1 (adh1C), unknown protein (adh1D), hypothetical protein (adh1E), and unknown protein (adh1F) genes, complete cds Length = 126039 Score = 210 bits (106), Expect = 3e-51 Identities = 145/158 (91%) Strand = Plus / Plus Query: 240 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 299 |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||| ||| Sbjct: 96024 cagaatgcgttggagcagttggcatccattgatctcatcgagctatgcaaggaggccaga 96083 Query: 300 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 359 ||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct: 96084 attgagcgctgccgtgcaactagagacttgagtagctgtggccgctatgtgcaccatgtg 96143 Query: 360 ctcaactcatgtgggcatgcctcgttatgtgctgagtg 397 || ||||||||||| |||||||| |||||||||||||| Sbjct: 96144 cttaactcatgtggccatgcctcattatgtgctgagtg 96181
>gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence Length = 78195 Score = 194 bits (98), Expect = 2e-46 Identities = 143/158 (90%) Strand = Plus / Plus Query: 240 cagaatgctttggagcagttggcgtccattgatctcattgagctgagcaaggaggctaga 299 ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||| Sbjct: 51854 cagaatgctttggagcagttggcatccattgatctcatcgagctatgcaaggaggccaga 51913 Query: 300 attgagcactgccgtgcaactagggacttgagtagctgcggccgctatgtgcaacatgtg 359 ||||||| |||||||||||||| |||||||||||||| ||||||||||| | |||||| Sbjct: 51914 attgagcgttgccgtgcaactagagacttgagtagctgtggccgctatgttcgtcatgtg 51973 Query: 360 ctcaactcatgtgggcatgcctcgttatgtgctgagtg 397 || ||||||||||| |||||||| |||||||||||||| Sbjct: 51974 cttaactcatgtggccatgcctcattatgtgctgagtg 52011
>gb|DQ215136.1| Taeniopygia guttata clone 0061P0010G05 adenylate kinase 1 variant 1-like mRNA, complete sequence Length = 848 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 30 cccgcaccggccgcaccgccgccgc 54 |||||||||||| |||||||||||| Sbjct: 46 cccgcaccggccccaccgccgccgc 22
>gb|AF357202.1| Streptomyces nodosus amphotericin biosynthetic gene cluster, complete sequence Length = 113193 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 ccggccgcaccgccgccgcgc 56 ||||||||||||||||||||| Sbjct: 81391 ccggccgcaccgccgccgcgc 81411
>ref|XM_658398.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5886.2), mRNA Length = 2319 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 ctcccaagtacgacagcgccg 234 ||||||||||||||||||||| Sbjct: 782 ctcccaagtacgacagcgccg 802
>ref|XM_750366.1| Aspergillus fumigatus Af293 3-isopropylmalate dehydratase (Afu2g11260) partial mRNA Length = 2334 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 ctcccaagtacgacagcgccg 234 ||||||||||||||||||||| Sbjct: 782 ctcccaagtacgacagcgccg 802
>emb|AL021497.1|CEY51A2D Caenorhabditis elegans YAC Y51A2D, complete sequence Length = 139259 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 gcaccggccgcaccgccgccg 53 ||||||||||||||||||||| Sbjct: 62535 gcaccggccgcaccgccgccg 62555
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 caccggccgcaccgccgccgc 54 ||||||||||||||||||||| Sbjct: 1291901 caccggccgcaccgccgccgc 1291881
>gb|AE012111.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 19 of 460 of the complete genome Length = 11732 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 caccggccgcaccgccgccgc 54 ||||||||||||||||||||| Sbjct: 1047 caccggccgcaccgccgccgc 1067
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 caccggccgcaccgccgccgc 54 ||||||||||||||||||||| Sbjct: 199545 caccggccgcaccgccgccgc 199565
>ref|NM_075224.3| Caenorhabditis elegans Y51A2D.7b (Y51A2D.7) mRNA, complete cds Length = 3184 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 gcaccggccgcaccgccgccg 53 ||||||||||||||||||||| Sbjct: 1959 gcaccggccgcaccgccgccg 1979
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 30 cccgcaccggccgcaccgccgccgc 54 ||||| ||||||||||||||||||| Sbjct: 187242 cccgccccggccgcaccgccgccgc 187218
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 47 gccgccgcgccactccctccccggctcct 75 ||||||||||||||| |||||| |||||| Sbjct: 16681871 gccgccgcgccactcactcccccgctcct 16681843 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gctcctccacctccttcgcc 89 |||||||||||||||||||| Sbjct: 1589371 gctcctccacctccttcgcc 1589352
>gb|AC009973.10| Homo sapiens BAC clone RP11-457P23 from 2, complete sequence Length = 202383 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 ccgcctccccccgcaccggcc 41 ||||||||||||||||||||| Sbjct: 106468 ccgcctccccccgcaccggcc 106488
>dbj|AP005308.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0047B10 Length = 158798 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 47 gccgccgcgccactccctccccggctcct 75 ||||||||||||||| |||||| |||||| Sbjct: 30565 gccgccgcgccactcactcccccgctcct 30537
>dbj|AP005575.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1596_C06 Length = 124721 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 47 gccgccgcgccactccctccccggctcct 75 ||||||||||||||| |||||| |||||| Sbjct: 90010 gccgccgcgccactcactcccccgctcct 89982
>gb|AY106307.1| Zea mays PCO070813 mRNA sequence Length = 799 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 caccggccgcaccgccgccgc 54 ||||||||||||||||||||| Sbjct: 299 caccggccgcaccgccgccgc 279
>ref|NM_186997.1| Oryza sativa (japonica cultivar-group), mRNA Length = 354 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 gccgcaccgccgccgcgcca 58 |||||||||||||||||||| Sbjct: 40 gccgcaccgccgccgcgcca 21
>gb|AY657636.1| Synthetic construct Peudomonas aeruginosa clone FLH041267.01F PA2614 gene, partial cds Length = 627 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 acgacagcgccgccgtccag 242 |||||||||||||||||||| Sbjct: 65 acgacagcgccgccgtccag 84
>gb|AC118640.8| Mus musculus chromosome 15, clone RP24-112A20, complete sequence Length = 179510 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 59 ctccctccccggctcctccacctccttc 86 |||||||||||| |||||||| |||||| Sbjct: 119914 ctccctccccggatcctccacttccttc 119941
>gb|AC159209.2| Mus musculus BAC clone RP23-100C6 from chromosome 13, complete sequence Length = 212761 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 30 cccgcaccggccgcaccgccgccgcgcc 57 |||||| || |||||||||||||||||| Sbjct: 158833 cccgcagcgcccgcaccgccgccgcgcc 158806
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ccgcaccggccgcaccgccg 50 |||||||||||||||||||| Sbjct: 2938115 ccgcaccggccgcaccgccg 2938134
>emb|CR352287.12| Zebrafish DNA sequence from clone DKEY-158P1 in linkage group 24, complete sequence Length = 153729 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 67 ccggctcctccacctccttcgccggggc 94 ||||||||||| |||||||| ||||||| Sbjct: 30848 ccggctcctcctcctccttctccggggc 30875
>gb|BC062123.1| Mus musculus chromodomain protein, Y chromosome-like, mRNA (cDNA clone MGC:69916 IMAGE:6826210), complete cds Length = 3596 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 30 cccgcaccggccgcaccgccgccgcgcc 57 |||||| || |||||||||||||||||| Sbjct: 235 cccgcagcgcccgcaccgccgccgcgcc 262
>gb|AC141476.3| Mus musculus BAC clone RP24-170D4 from chromosome 13, complete sequence Length = 146228 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 30 cccgcaccggccgcaccgccgccgcgcc 57 |||||| || |||||||||||||||||| Sbjct: 64820 cccgcagcgcccgcaccgccgccgcgcc 64793
>gb|AC162940.4| Mus musculus BAC clone RP23-95D3 from chromosome 13, complete sequence Length = 218228 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 30 cccgcaccggccgcaccgccgccgcgcc 57 |||||| || |||||||||||||||||| Sbjct: 183324 cccgcagcgcccgcaccgccgccgcgcc 183351
>gb|AF451983.1| Homo sapiens hepatoma-derived growth factor 4a (HDGF) mRNA, complete cds Length = 870 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ctccccggctcctccacctc 82 |||||||||||||||||||| Sbjct: 639 ctccccggctcctccacctc 620
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 30 cccgcaccggccgcaccgccgccg 53 ||||||||||| |||||||||||| Sbjct: 184063 cccgcaccggctgcaccgccgccg 184086
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cggccgcaccgccgccgcgc 56 |||||||||||||||||||| Sbjct: 64611 cggccgcaccgccgccgcgc 64630
>emb|AL662807.8| Mouse DNA sequence from clone RP23-138O19 on chromosome 13 Contains the Hdgfrp1 gene for hepatoma-derived growth factor related protein 1 and a ribosomal protein 27A (Rpl27a) pseudogene, complete sequence Length = 188325 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ctccccggctcctccacctc 82 |||||||||||||||||||| Sbjct: 99325 ctccccggctcctccacctc 99344
>dbj|AK133357.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932442B12 product:PWWP domain containing 1, full insert sequence Length = 2001 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ctccccggctcctccacctc 82 |||||||||||||||||||| Sbjct: 706 ctccccggctcctccacctc 687
>dbj|AK133257.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932425C17 product:unclassifiable, full insert sequence Length = 3339 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ctccccggctcctccacctc 82 |||||||||||||||||||| Sbjct: 72 ctccccggctcctccacctc 91
>dbj|AK156509.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830027O21 product:chromodomain protein, Y chromosome-like, full insert sequence Length = 3487 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 30 cccgcaccggccgcaccgccgccgcgcc 57 |||||| || |||||||||||||||||| Sbjct: 147 cccgcagcgcccgcaccgccgccgcgcc 174
>dbj|AK163913.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230048H13 product:unclassifiable, full insert sequence Length = 2413 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 30 cccgcaccggccgcaccgccgccgcgcc 57 |||||| || |||||||||||||||||| Sbjct: 84 cccgcagcgcccgcaccgccgccgcgcc 111
>emb|BX539345.7| Zebrafish DNA sequence from clone DKEY-120M4 in linkage group 9, complete sequence Length = 94606 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 162 ggtgctggagagggcttgcggatg 185 ||||||||||||||| |||||||| Sbjct: 48353 ggtgctggagagggcgtgcggatg 48330
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gccgcaccgccgccgcgcca 58 |||||||||||||||||||| Sbjct: 23682492 gccgcaccgccgccgcgcca 23682511
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 ccctccccggctcctccacctcct 84 ||||||||||||||||| |||||| Sbjct: 23118516 ccctccccggctcctcctcctcct 23118539
>gb|AC009203.5|AC009203 Drosophila melanogaster, chromosome 2L, region 36E-37C, BAC clone BACR07J05, complete sequence Length = 172061 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 41 cgcaccgccgccgcgccactccctcccc 68 ||||||||| |||| ||||||||||||| Sbjct: 108304 cgcaccgcccccgcaccactccctcccc 108331
>gb|AE004690.1| Pseudomonas aeruginosa PAO1, section 251 of 529 of the complete genome Length = 10325 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 acgacagcgccgccgtccag 242 |||||||||||||||||||| Sbjct: 1989 acgacagcgccgccgtccag 1970
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cggccgcaccgccgccgcgc 56 |||||||||||||||||||| Sbjct: 275487 cggccgcaccgccgccgcgc 275506
>gb|AF180109.1|AF180109 Mus musculus hepatoma-derived growth factor (Hrp1) mRNA, partial cds Length = 1856 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ctccccggctcctccacctc 82 |||||||||||||||||||| Sbjct: 553 ctccccggctcctccacctc 534
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 caccggccgcaccgccgccg 53 |||||||||||||||||||| Sbjct: 2871127 caccggccgcaccgccgccg 2871146
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 caccggccgcaccgccgccg 53 |||||||||||||||||||| Sbjct: 445165 caccggccgcaccgccgccg 445184
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 ccctccccggctcctccacctcct 84 ||||||||||||||||| |||||| Sbjct: 69164 ccctccccggctcctcctcctcct 69187
>dbj|AP003803.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1060_D03 Length = 102178 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 gccgcaccgccgccgcgcca 58 |||||||||||||||||||| Sbjct: 27106 gccgcaccgccgccgcgcca 27125
>dbj|AP005746.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0018I03 Length = 145818 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 gctcctccacctccttcgcc 89 |||||||||||||||||||| Sbjct: 117615 gctcctccacctccttcgcc 117596
>dbj|AK069376.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012K19, full insert sequence Length = 1230 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 ccctccccggctcctccacctcct 84 ||||||||||||||||| |||||| Sbjct: 197 ccctccccggctcctcctcctcct 220
>dbj|AK061037.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B07, full insert sequence Length = 1241 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 ccctccccggctcctccacctcct 84 ||||||||||||||||| |||||| Sbjct: 196 ccctccccggctcctcctcctcct 219
>emb|CR388184.33| Zebrafish DNA sequence from clone CH211-261O3 in linkage group 8, complete sequence Length = 180216 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 67 ccggctcctccacctccttcgccggggc 94 ||||||||||| |||||||| ||||||| Sbjct: 58514 ccggctcctcctcctccttctccggggc 58487
>gb|AE003660.2| Drosophila melanogaster chromosome 2L, section 69 of 83 of the complete sequence Length = 232737 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 41 cgcaccgccgccgcgccactccctcccc 68 ||||||||| |||| ||||||||||||| Sbjct: 134064 cgcaccgcccccgcaccactccctcccc 134091
>gb|BC108388.1| Mus musculus hepatoma derived growth factor-like 1, mRNA (cDNA clone MGC:118278 IMAGE:30920044), complete cds Length = 2046 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ctccccggctcctccacctc 82 |||||||||||||||||||| Sbjct: 653 ctccccggctcctccacctc 634
>gb|L22864.1|STMWHIB12X Streptomyces aureofaciens whiB operon, complete sequence Length = 4615 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 ccgcaccggccgcaccgccgccgc 54 ||||||||||||||||||| |||| Sbjct: 514 ccgcaccggccgcaccgcccccgc 537
>ref|NM_008232.1| Mus musculus hepatoma derived growth factor-like 1 (Hdgfl1), mRNA Length = 1333 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ctccccggctcctccacctc 82 |||||||||||||||||||| Sbjct: 657 ctccccggctcctccacctc 638
>gb|L11646.1|STMWHIBX Streptomyces aureofaciens transcription-like factor (whiB) gene, complete cds Length = 810 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 ccgcaccggccgcaccgccgccgc 54 ||||||||||||||||||| |||| Sbjct: 514 ccgcaccggccgcaccgcccccgc 537
>dbj|D63663.1| Mus musculus mRNA for hepatoma-derived growth factor, complete cds, strain:RAIB/c Length = 1333 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 ctccccggctcctccacctc 82 |||||||||||||||||||| Sbjct: 657 ctccccggctcctccacctc 638 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,158,221 Number of Sequences: 3902068 Number of extensions: 3158221 Number of successful extensions: 64788 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 63 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63807 Number of HSP's gapped (non-prelim): 980 length of query: 401 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 379 effective length of database: 17,147,199,772 effective search space: 6498788713588 effective search space used: 6498788713588 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
