ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl17e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_469360.1| Oryza sativa (japonica cultivar-group), mRNA 64 3e-07
2dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 58 2e-05
4gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genom... 58 2e-05
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
6gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genom... 58 2e-05
7dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 8e-05
8gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome... 50 0.005
9ref|XM_420603.1| PREDICTED: Gallus gallus similar to sodium bica... 42 1.1
10gb|AC069419.20| Homo sapiens 3 BAC RP11-11D18 (Roswell Park Canc... 42 1.1
11gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome... 42 1.1
12gb|AF380344.1|AF380343S2 Homo sapiens pontin 52 (RUVBL1) gene, e... 42 1.1
13gb|AC008936.6| Homo sapiens chromosome 5 clone CTD-2309I16, comp... 42 1.1
14gb|AC154748.2| Mus musculus BAC clone RP23-116P6 from chromosome... 42 1.1
15gb|AE004522.1| Pseudomonas aeruginosa PAO1, section 83 of 529 of... 42 1.1
16emb|BX647488.1|HSM807634 Homo sapiens mRNA; cDNA DKFZp686C14128 ... 42 1.1
17ref|NM_188119.1| Oryza sativa (japonica cultivar-group), Ozsa855... 40 4.5
18gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genom... 40 4.5
19gb|BC058111.1| Mus musculus zinc fingers and homeoboxes 3, mRNA ... 40 4.5
20gb|AY576796.1| Actinoplanes phage phiAsp2, complete genome 40 4.5
21ref|NM_177263.3| Mus musculus zinc fingers and homeoboxes 3 (Zhx... 40 4.5
22gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 4.5
23gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, comp... 40 4.5
24ref|XM_754826.1| Ustilago maydis 521 hypothetical protein (UM037... 40 4.5
25emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome 40 4.5
26gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 4.5
27emb|AL161450.14| Human DNA sequence from clone RP11-39K24 on chr... 40 4.5
28emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 40 4.5
29gb|AC105129.4| Homo sapiens chromosome 15, clone RP11-349G13, co... 40 4.5
30dbj|AK143296.1| Mus musculus 2 days pregnant adult female oviduc... 40 4.5
31dbj|AK147259.1| Mus musculus cDNA, RIKEN full-length enriched li... 40 4.5
32dbj|AK029603.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 4.5
33gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 4.5
34dbj|AK030057.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 4.5
35gb|AC153628.3| Mus musculus 6 BAC RP23-13B24 (Roswell Park Cance... 40 4.5
36dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
37gb|AC112710.4| Homo sapiens BAC clone RP13-620L6 from 4, complet... 40 4.5
38dbj|AB099703.2| Mus musculus ZHX3 gene for transcription factor ... 40 4.5
39gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.5
40dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
41dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
42dbj|AB099527.2| Mus musculus mRNA for transcription factor ZHX3,... 40 4.5
43dbj|AP000478.6| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 4.5
44dbj|AP001978.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.5
45gb|DQ317973.1| Mus musculus zinc fingers and homeoboxes 3 (Zhx3)... 40 4.5
46emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chr... 40 4.5
47gb|L14320.1|HSBBICP4A Bovine herpesvirus type 1 early-intermedia... 40 4.5
48gb|L14321.1|HSBBICP4B Bovine herpesvirus type 1 immedidate-early... 40 4.5

>ref|XM_469360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3534

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 289 aggcttcaggctcaagcaacttctgatggacctaagaaaagtgagaagaagc 340
           ||||| ||||| |||||| |||| ||||||||||||||||| ||||||||||
Sbjct: 133 aggctccaggcacaagcagcttcagatggacctaagaaaagcgagaagaagc 184



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>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full
           insert sequence
          Length = 3587

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                               
Query: 289 aggcttcaggctcaagcaacttctgatggacctaagaaaagtgagaagaagc 340
           ||||| ||||| |||||| |||| ||||||||||||||||| ||||||||||
Sbjct: 346 aggctccaggcacaagcagcttcagatggacctaagaaaagcgagaagaagc 397



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                             
Query: 296      aggctcaagcaacttctgatggacctaagaaaagtgagaagaagc 340
                |||| |||||| |||| ||||||||||||||||| ||||||||||
Sbjct: 27536308 aggcacaagcagcttcagatggacctaagaaaagcgagaagaagc 27536352



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 296    aggctcaagcaacttctgatggacctaagaaaagtgagaagaagc 340
              |||| |||||| |||| ||||| ||||| ||||||||||||||||
Sbjct: 645973 aggcacaagcagcttcagatggtcctaaaaaaagtgagaagaagc 646017



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 302      aagcaacttctgatggacct 321
                ||||||||||||||||||||
Sbjct: 15306711 aagcaacttctgatggacct 15306692



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>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete
             sequence
          Length = 27470

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 296   aggctcaagcaacttctgatggacctaagaaaagtgagaagaagc 340
             |||| |||||| |||| ||||||||||||||||| ||||||||||
Sbjct: 26466 aggcacaagcagcttcagatggacctaagaaaagcgagaagaagc 26422



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                             
Query: 296      aggctcaagcaacttctgatggacctaagaaaagtgagaagaagc 340
                |||| |||||| |||| ||||||||||||||||| ||||||||||
Sbjct: 27627631 aggcacaagcagcttcagatggacctaagaaaagcgagaagaagc 27627675



 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                           
Query: 296    aggctcaagcaacttctgatggacctaagaaaagtgagaagaagc 340
              |||| |||||| |||| ||||| ||||| ||||||||||||||||
Sbjct: 645971 aggcacaagcagcttcagatggtcctaaaaaaagtgagaagaagc 646015



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 302      aagcaacttctgatggacct 321
                ||||||||||||||||||||
Sbjct: 15301245 aagcaacttctgatggacct 15301226



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>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete
             sequence
          Length = 123406

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 296   aggctcaagcaacttctgatggacctaagaaaagtgagaagaagc 340
             |||| |||||| |||| ||||||||||||||||| ||||||||||
Sbjct: 14206 aggcacaagcagcttcagatggacctaagaaaagcgagaagaagc 14162



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>dbj|AK066973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089D01, full
            insert sequence
          Length = 4411

 Score = 56.0 bits (28), Expect = 8e-05
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                                
Query: 289  aggcttcaggctcaagcaacttctgatggacctaagaaaagtgagaagaagc 340
            ||||| ||||| |||||| |||| ||||| ||||| ||||||||||||||||
Sbjct: 1240 aggctccaggcacaagcagcttcagatggtcctaaaaaaagtgagaagaagc 1291



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>gb|AC121490.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0005F16, complete sequence
          Length = 160053

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                          
Query: 296   aggctcaagcaacttctgatggacctaagaaaagtgagaagaagc 340
             |||| |||||| |||| ||||| ||||| ||||||||||||||||
Sbjct: 31854 aggcacaagcagcttcagatggtcctaaaaaaagtgagaagaagc 31898



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>ref|XM_420603.1| PREDICTED: Gallus gallus similar to sodium bicarbonate
           cotransporter (LOC422649), mRNA
          Length = 4408

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 153 ggagaaggcggcgtcagaggagaag 177
           |||||||||||||||| ||||||||
Sbjct: 120 ggagaaggcggcgtcataggagaag 144



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>gb|AC069419.20| Homo sapiens 3 BAC RP11-11D18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 61415

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    tgtcagggacactctgctctc 47
             |||||||||||||||||||||
Sbjct: 55239 tgtcagggacactctgctctc 55219



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>gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome 13, complete sequence
          Length = 193176

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 118    tctctcaccatggagaagccc 138
              |||||||||||||||||||||
Sbjct: 177775 tctctcaccatggagaagccc 177755



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>gb|AF380344.1|AF380343S2 Homo sapiens pontin 52 (RUVBL1) gene, exons 2 through 11, and complete
             cds
          Length = 40881

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    tgtcagggacactctgctctc 47
             |||||||||||||||||||||
Sbjct: 36705 tgtcagggacactctgctctc 36685



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>gb|AC008936.6| Homo sapiens chromosome 5 clone CTD-2309I16, complete sequence
          Length = 56515

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 310   tctgatggacctaagaaaagt 330
             |||||||||||||||||||||
Sbjct: 41453 tctgatggacctaagaaaagt 41473



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>gb|AC154748.2| Mus musculus BAC clone RP23-116P6 from chromosome 13, complete sequence
          Length = 203908

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 118    tctctcaccatggagaagccc 138
              |||||||||||||||||||||
Sbjct: 193131 tctctcaccatggagaagccc 193151



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>gb|AE004522.1| Pseudomonas aeruginosa PAO1, section 83 of 529 of the complete genome
          Length = 15724

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 71    aagcgccggcgcgcggccccggcggcgcg 99
             |||||||||||||||||  ||||||||||
Sbjct: 14294 aagcgccggcgcgcggcggcggcggcgcg 14266



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>emb|BX647488.1|HSM807634 Homo sapiens mRNA; cDNA DKFZp686C14128 (from clone DKFZp686C14128)
          Length = 4094

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 27  tgtcagggacactctgctctc 47
           |||||||||||||||||||||
Sbjct: 446 tgtcagggacactctgctctc 426



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>ref|NM_188119.1| Oryza sativa (japonica cultivar-group), Ozsa8551 predicted mRNA
          Length = 2388

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   cggcgcgcggccccggcggc 96
            ||||||||||||||||||||
Sbjct: 1541 cggcgcgcggccccggcggc 1560



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>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete
             sequence
          Length = 137709

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   aagcaacttctgatggacct 321
             ||||||||||||||||||||
Sbjct: 30637 aagcaacttctgatggacct 30656



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>gb|BC058111.1| Mus musculus zinc fingers and homeoboxes 3, mRNA (cDNA clone
           MGC:67301 IMAGE:6836697), complete cds
          Length = 4499

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ctgtcagggacactctgctc 45
           ||||||||||||||||||||
Sbjct: 929 ctgtcagggacactctgctc 910



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>gb|AY576796.1| Actinoplanes phage phiAsp2, complete genome
          Length = 58638

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 83   gcggccccggcggcgcgacc 102
            ||||||||||||||||||||
Sbjct: 9817 gcggccccggcggcgcgacc 9836



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>ref|NM_177263.3| Mus musculus zinc fingers and homeoboxes 3 (Zhx3), mRNA
          Length = 4499

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ctgtcagggacactctgctc 45
           ||||||||||||||||||||
Sbjct: 929 ctgtcagggacactctgctc 910



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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    gcgcgcggccccggcggcgc 98
             ||||||||||||||||||||
Sbjct: 48421 gcgcgcggccccggcggcgc 48440



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>gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, complete sequence
          Length = 182677

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    cggcgcgcggccccggcggc 96
             ||||||||||||||||||||
Sbjct: 10351 cggcgcgcggccccggcggc 10332



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>ref|XM_754826.1| Ustilago maydis 521 hypothetical protein (UM03772.1) partial mRNA
          Length = 1662

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 175  aagctgcttgacgacaagga 194
            ||||||||||||||||||||
Sbjct: 1393 aagctgcttgacgacaagga 1412



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>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome
          Length = 135301

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     gcgcgcggccccggcggcgc 98
              ||||||||||||||||||||
Sbjct: 132301 gcgcgcggccccggcggcgc 132320



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     gcgcgcggccccggcggcgc 98
              ||||||||||||||||||||
Sbjct: 105917 gcgcgcggccccggcggcgc 105898



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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    gcggccccggcggcgcgacc 102
             ||||||||||||||||||||
Sbjct: 90997 gcggccccggcggcgcgacc 91016



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>emb|AL161450.14| Human DNA sequence from clone RP11-39K24 on chromosome 9 Contains the
             3' end of the JAK2 gene for Janus kinase 2 (a protein
             tyrosine kinase), a casein kinase pseudogene, a
             trans-prenyltransferase (TPT) pseudogene, a NADH
             dehydrogenase 6 (MTND6) pseuodgene, a  NADH dehydrogenase
             1 (MTND1) pseudogene, a cytochrome c oxidase I (MTCO1)
             pseudogene, a  cytochrome c oxidase II (MTCO2) pseudogene,
             an ATP synthase 6 (MTATP6) pseudogene, a cytochrome c
             oxidase III (MTCO3) pseudogene, a NADH dehydrogenase 4
             (MTND4)pseudogene, a pseudogene similar to part of NADH
             dehydrogenase 5 (MTND5), a transcription factor 3 (E2A
             immunoglobulin enhancer binding factors E12/E47) (TCF3)
             pseudogene, an immunoglobulin heavy constant epsilon
             pseudogene 2 (IGHEP2), a novel gene, the INSL6 gene for
             insulin-like 6 (RIF1) and 4 CpG islands, complete sequence
          Length = 171146

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    cggcgcgcggccccggcggc 96
             ||||||||||||||||||||
Sbjct: 67411 cggcgcgcggccccggcggc 67430



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>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 85     ggccccggcggcgcgaccac 104
              ||||||||||||||||||||
Sbjct: 138762 ggccccggcggcgcgaccac 138743



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>gb|AC105129.4| Homo sapiens chromosome 15, clone RP11-349G13, complete sequence
          Length = 198295

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    gacaaggagctagagctaga 206
              ||||||||||||||||||||
Sbjct: 124623 gacaaggagctagagctaga 124642



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>dbj|AK143296.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
           full-length enriched library, clone:E230037F05
           product:zinc fingers and homeoboxes 3, full insert
           sequence
          Length = 4462

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ctgtcagggacactctgctc 45
           ||||||||||||||||||||
Sbjct: 910 ctgtcagggacactctgctc 891



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>dbj|AK147259.1| Mus musculus cDNA, RIKEN full-length enriched library,
           clone:M5C1003G16 product:zinc fingers and homeoboxes 3,
           full insert sequence
          Length = 9067

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ctgtcagggacactctgctc 45
           ||||||||||||||||||||
Sbjct: 751 ctgtcagggacactctgctc 732



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>dbj|AK029603.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930412E20 product:DJ511B24.3 (KIAA0395
           (PROBABLE HOMEOBOX PROTEIN)) homolog [Homo sapiens],
           full insert sequence
          Length = 3352

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ctgtcagggacactctgctc 45
           ||||||||||||||||||||
Sbjct: 801 ctgtcagggacactctgctc 782



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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     cgccggcgcgcggccccggc 93
              ||||||||||||||||||||
Sbjct: 714139 cgccggcgcgcggccccggc 714158



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>dbj|AK030057.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4932418O04 product:DJ511B24.3 (KIAA0395
           (PROBABLE HOMEOBOX PROTEIN)) homolog [Homo sapiens],
           full insert sequence
          Length = 3611

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ctgtcagggacactctgctc 45
           ||||||||||||||||||||
Sbjct: 894 ctgtcagggacactctgctc 875



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>gb|AC153628.3| Mus musculus 6 BAC RP23-13B24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 219322

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 318    acctaagaaaagtgagaaga 337
              ||||||||||||||||||||
Sbjct: 125144 acctaagaaaagtgagaaga 125163



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 77      cggcgcgcggccccggcggc 96
               ||||||||||||||||||||
Sbjct: 9864336 cggcgcgcggccccggcggc 9864355



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>gb|AC112710.4| Homo sapiens BAC clone RP13-620L6 from 4, complete sequence
          Length = 74521

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   caggcttcaggctcaagcaa 307
             ||||||||||||||||||||
Sbjct: 60614 caggcttcaggctcaagcaa 60595



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>dbj|AB099703.2| Mus musculus ZHX3 gene for transcription factor ZHX3, complete cds
          Length = 13008

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   ctgtcagggacactctgctc 45
            ||||||||||||||||||||
Sbjct: 1998 ctgtcagggacactctgctc 1979



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 86      gccccggcggcgcgaccacc 105
               ||||||||||||||||||||
Sbjct: 3240672 gccccggcggcgcgaccacc 3240691



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>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0025D05
          Length = 145684

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     cggcgcgcggccccggcggc 96
              ||||||||||||||||||||
Sbjct: 128586 cggcgcgcggccccggcggc 128605



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>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           clone:P0003H10
          Length = 142418

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 77  cggcgcgcggccccggcggc 96
           ||||||||||||||||||||
Sbjct: 102 cggcgcgcggccccggcggc 121



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>dbj|AB099527.2| Mus musculus mRNA for transcription factor ZHX3, complete cds
          Length = 2856

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ctgtcagggacactctgctc 45
           ||||||||||||||||||||
Sbjct: 473 ctgtcagggacactctgctc 454



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>dbj|AP000478.6| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-14E22, complete
             sequence
          Length = 121689

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 191   aggagctagagctagagcgggagc 214
             |||||||||||||||||| |||||
Sbjct: 48973 aggagctagagctagagcaggagc 48996



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>dbj|AP001978.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-258O13, complete
              sequence
          Length = 161602

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 191    aggagctagagctagagcgggagc 214
              |||||||||||||||||| |||||
Sbjct: 153278 aggagctagagctagagcaggagc 153301



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>gb|DQ317973.1| Mus musculus zinc fingers and homeoboxes 3 (Zhx3) mRNA, complete
           cds
          Length = 2856

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 26  ctgtcagggacactctgctc 45
           ||||||||||||||||||||
Sbjct: 473 ctgtcagggacactctgctc 454



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>emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chromosome 2, complete
             sequence
          Length = 207901

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ctgtcagggacactctgctc 45
             ||||||||||||||||||||
Sbjct: 51687 ctgtcagggacactctgctc 51706



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>gb|L14320.1|HSBBICP4A Bovine herpesvirus type 1 early-intermediate transcription control
            protein (BICP4) gene, complete cds
          Length = 8113

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   gcgcgcggccccggcggcgc 98
            ||||||||||||||||||||
Sbjct: 5114 gcgcgcggccccggcggcgc 5133



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>gb|L14321.1|HSBBICP4B Bovine herpesvirus type 1 immedidate-early transcriptional control
            protein (BICP4) gene, 5' end
          Length = 2764

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   gcgcgcggccccggcggcgc 98
            ||||||||||||||||||||
Sbjct: 2362 gcgcgcggccccggcggcgc 2381


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,146,461
Number of Sequences: 3902068
Number of extensions: 2146461
Number of successful extensions: 42929
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42113
Number of HSP's gapped (non-prelim): 816
length of query: 340
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 318
effective length of database: 17,147,199,772
effective search space: 5452809527496
effective search space used: 5452809527496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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