>KIF12_HUMAN (Q96FN5) Kinesin-like protein KIF12|
          Length = 646

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 77  LSRIPISHAAVLTA---VDEVGGPEAIGGRAKPA*PNHKG*GCGPGAS 211
           L R+P++H A L     + +V  PEA GGR   A P      C PG++
Sbjct: 508 LCRVPLAHWACLPGEHHLPQVLDPEASGGRPPSARPPPWAPPCSPGSA 555

>IL3RB_HUMAN (P32927) Cytokine receptor common beta chain precursor|
           (GM-CSF/IL-3/IL-5 receptor common beta-chain) (CD131
           antigen) (CDw131)
          Length = 897

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 22  GPDHLLSSSHRAARANTQLVPNSDL 96
           GP+HL+ SS   AR  T+L P S L
Sbjct: 198 GPEHLMPSSTYVARVRTRLAPGSRL 222

>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +2

Query: 41  LPLTVPRGPTPNLSRIPISHAAVLTAVDEVGGPEAIG 151
           LP+++P   T   S + +S AAV+ AV E GG  A G
Sbjct: 84  LPMSLPLPLTAASSAVTVSLAAVVAAVAETGGAGAGG 120

>DCDA_SYNY3 (Q55484) Diaminopimelate decarboxylase (EC 4.1.1.20) (DAP|
           decarboxylase)
          Length = 469

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 19/47 (40%), Positives = 23/47 (48%)
 Frame = +2

Query: 29  TTFSLPLTVPRGPTPNLSRIPISHAAVLTAVDEVGGPEAIGGRAKPA 169
           TT S  L  P  P+PN + +P      LTAV    G   IGG + PA
Sbjct: 10  TTGSTLLKTPASPSPNQNLLP------LTAVINKNGELEIGGCSVPA 50

>REV_HV1A2 (P04623) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -3

Query: 266 PPSPIGASRPRHCRPSRAPTRPDRNPSLCGWVKQVWRARRWPPV 135
           PPSP G  + R  R  R   R  +  S+ GW+   +  R   PV
Sbjct: 28  PPSPEGTRQARRNRRRRWRERQRQIRSISGWILSTYLGRSAEPV 71

>Y4KQ_RHISN (P55535) Very hypothetical 15.3 kDa protein y4kQ|
          Length = 142

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 266 PPSPIGASRPRHCRPSRAPTRPDRNPSLCGWVKQ 165
           PP+P GASRP H R            ++CG VK+
Sbjct: 95  PPAPAGASRPHHNRRPHPSHAVLGMLAVCGHVKR 128

>AL2S3_RAT (Q8R2H7) Amyotrophic lateral sclerosis 2 chromosomal region|
          candidate gene 3 protein homolog (Trafficking protein,
          kinesin-binding 2) (GABA-A receptor-interacting factor
          1) (GRIF-1) (O-GlcNAc transferase-interacting protein
          of 98 kDa)
          Length = 913

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 13 SLEGPDHLLSSSHRAARANTQLVPNSDLP 99
          S  G ++L+SS+HR + + T +  N DLP
Sbjct: 11 SQTGEENLMSSNHRDSESITDVCSNEDLP 39

>ZN364_MOUSE (Q9D0C1) Zinc finger protein 364 (Rabring 7)|
          Length = 305

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 275 FLDPPSPIGASRPRHCRPSRAPTRPDRNPSLCGWVKQVW 159
           F  P  P      R  R SR  TRPDR+P++ G ++Q++
Sbjct: 113 FWGPSRPPRLPMTRRYR-SRGSTRPDRSPAIEGIIQQIF 150

>COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor|
          Length = 680

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +2

Query: 128 VGGPEAIGGRAKPA*PNHKG*GCGPGASGLAMDDSAVG 241
           +G P AIG   +P  P  KG    PGA G+A    A G
Sbjct: 263 IGKPGAIGSPGQPGIPGEKG---HPGAPGIAGPPGAPG 297

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +2

Query: 110 LTAVDEVGGPEAIGGRAKPA*PNHKG*GCGPGASGLAMDDSAVGEK 247
           L  +   GGP   G   KP  P  KG    PGA G   D  A GE+
Sbjct: 639 LQGIPGTGGPP--GENGKPGEPGPKGEVGAPGAPGGKGDSGAPGER 682

>K1688_MOUSE (P59281) Protein KIAA1688|
          Length = 1107

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 166 CLTQPQRLGLRSGRVGARDGRQCRGREAP 252
           CL + QRLG+RSG     +G + R  + P
Sbjct: 430 CLLRDQRLGVRSGDYSTMEGPESRPSQPP 458

>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +2

Query: 131 GGPEAIGGRAKPA*PNHKG*GCGPGASGLAMDDSAVGEK 247
           GGP   G   KP  P  KG   GPG  G   ++   GE+
Sbjct: 644 GGPGPAGENGKPGEPGPKGDIGGPGFPGPKGENGIPGER 682

>VAL1_ABMVW (P21947) AL1 protein|
          Length = 355

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
 Frame = -3

Query: 263 PSPIGASRPRHCRPSR------APTRPDRNPSL 183
           PSP+    PR CR  R       P RPDR  SL
Sbjct: 185 PSPLSRPFPRRCRSGRMIILGVVPLRPDRPLSL 217

>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +2

Query: 110 LTAVDEVGGPEAIGGRAKPA*PNHKG*GCGPGASGLAMDDSAVGEK 247
           L  +   GGP   G   KP  P  KG    PGA G   D  A GE+
Sbjct: 640 LQGLPGTGGPP--GENGKPGEPGPKGDAGAPGAPGGKGDAGAPGER 683

>PHNJ_ECOLI (P16688) Protein phnJ|
          Length = 281

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +2

Query: 104 AVLTAVDEVGGPEAIGGRAKPA*PNHKG*GCGPGASGLAMDDSAVGEKRLLETEDQGS 277
           A+L AV   G     GGR  P          G G  G+ +  S +GE  +L+  DQG+
Sbjct: 23  AILKAVAIPGYQVPFGGREMPM-------PYGWGTGGIQLTASVIGESDVLKVIDQGA 73

>DISC1_HUMAN (Q9NRI5) Disrupted in schizophrenia 1 protein|
          Length = 854

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +2

Query: 77  LSRIPISHAAVLTAVDEVGGPEAIGG---RAKPA*PNHKG*GCGPGASGLAMDDSAVGEK 247
           L R P+S +A    V  V G  A  G   R     P+     CGPG++G   + +A+   
Sbjct: 94  LVRSPVSKSAAAPTVTSVRGTSAHFGIQLRGGTRLPDRLSWPCGPGSAGWQQEFAAMDSS 153

Query: 248 RLLE 259
             L+
Sbjct: 154 ETLD 157

>REV_HV1BN (P12485) REV protein (Anti-repression transactivator protein)|
           (ART/TRS) (Fragment)
          Length = 106

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 266 PPSPIGASRPRHCRPSRAPTRPDRNPSLCGWVKQVWRARRWPPV 135
           PP P G  + R  R  R   R  +  SL GW+   +  R   PV
Sbjct: 18  PPRPEGTRQARRNRRRRWRARQRQIQSLSGWILSTFLGRSAEPV 61

>YDH3_SHV2C (P22577) Hypothetical 9.5 kDa protein in DHFR 3'region (ORF3)|
          Length = 103

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 131 GGPEAIGGRAKPA*PNHKG*GCGPGASG 214
           GGP   GG   P  P   G  CGPG  G
Sbjct: 34  GGPGGPGGPCGPGGPCGPGGPCGPGGPG 61

>HSP1_MACPA (Q9GLQ9) Sperm protamine P1|
          Length = 60

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 240 ARSAYWRRRIKEARAEPPRRKWGARRSVPNRRPMR 344
           +RS Y RRR + +R    RR++  RR   +RR  R
Sbjct: 10  SRSRYRRRRRRRSRYRSRRRRYRGRRRXRSRRGRR 44

>HSP1_LAGFA (Q866P6) Sperm protamine P1|
          Length = 61

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 240 ARSAYWRRRIKEARAEPPRRKW-GARRSVPNRRPMR 344
           +RS Y RRR + +R    RR++ G+RRS   RR  R
Sbjct: 10  SRSRYRRRRRRRSRYRSRRRRYRGSRRSRSRRRGRR 45

>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein|
            p17 (MA); Capsid protein p24 (CA); p2 spacer peptide;
            Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
            pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse
            trans
          Length = 1440

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 141  SGPPTSSTAVRTAAWEIGIRDKLGV 67
            +GP  +ST V+ A W  GI+ + G+
Sbjct: 1269 NGPNFTSTTVKAACWWTGIKQEFGI 1293

>ICAM1_MOUSE (P13597) Intercellular adhesion molecule 1 precursor (ICAM-1)|
           (MALA-2)
          Length = 537

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 20  RDLTTFSLPLTVPRGPTPNLSRI 88
           R L TF LP T+P+  TP+L  +
Sbjct: 209 RSLRTFDLPATIPKLDTPDLLEV 231

>IF2_MYCTU (P65131) Translation initiation factor IF-2|
          Length = 900

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 44  PLTVPRGPTPNLSR--IPISHAAVLTAVDEVGGPEAIGGRAKPA*PNHKG*GCGPGASGL 217
           P+  P  P P  +R  +P   A+  +     GG  A+GG A+P  P     G  PGA G 
Sbjct: 166 PIPRPPAPRPGTARPGVPRPGASPGSMPPRPGG--AVGG-ARPPRPGAPRPGGRPGAPGA 222

Query: 218 AMDDSAVGEKR 250
              D+  G  R
Sbjct: 223 GRSDAGGGNYR 233

>IF2_MYCBO (P65132) Translation initiation factor IF-2|
          Length = 900

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = +2

Query: 44  PLTVPRGPTPNLSR--IPISHAAVLTAVDEVGGPEAIGGRAKPA*PNHKG*GCGPGASGL 217
           P+  P  P P  +R  +P   A+  +     GG  A+GG A+P  P     G  PGA G 
Sbjct: 166 PIPRPPAPRPGTARPGVPRPGASPGSMPPRPGG--AVGG-ARPPRPGAPRPGGRPGAPGA 222

Query: 218 AMDDSAVGEKR 250
              D+  G  R
Sbjct: 223 GRSDAGGGNYR 233

>Y922_TREPA (O83892) Hypothetical protein TP0922|
          Length = 297

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 266 PPSPIGASRPRHCRPSRAP-TRPDRNPSLC 180
           PPSP    R RH +P+RA      R+ SLC
Sbjct: 2   PPSPCAVLRVRHTKPARAAGVAAHRSFSLC 31


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.132    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,217,520
Number of Sequences: 219361
Number of extensions: 809629
Number of successful extensions: 2680
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2679
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)