ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17e04 |
|---|---|
| Clone Library Name | barley_pub |
>RBS3_FRIAG (O22573) Ribulose bisphosphate carboxylase small chain 3,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3) Length = 179 Score = 31.6 bits (70), Expect = 0.50 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +1 Query: 76 RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVN 255 RA+P A+M VAP S + +KP+ +S L G ++ K W V Sbjct: 16 RAAPAQASM-VAPFVGLKSASAFPVTQKPATGLSTLPSNGGRV-------QCMKVWPIVG 67 Query: 256 ARKFQFINFLSTL 294 +KF+ +++L TL Sbjct: 68 LKKFETLSYLPTL 80
>ARFG3_MOUSE (Q9D8S3) ADP-ribosylation factor GTPase-activating protein 3 (ARF| GAP 3) Length = 525 Score = 31.6 bits (70), Expect = 0.50 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%) Frame = +1 Query: 112 PGEAAPSGMYYHTKRKPSDPISGLSLP----GAKMVGNWGFGSVTKDWESVNARKFQ 270 PG+AAP+ + K+KP+ GL GA+ + N F + K ++V+ RK Q Sbjct: 203 PGKAAPAEVSSIIKKKPNQAKKGLGAKKGSLGAQKLTNTSFTEIEKQAQAVDKRKEQ 259
>RBS_MANES (Q42915) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 182 Score = 31.2 bits (69), Expect = 0.65 Identities = 21/75 (28%), Positives = 35/75 (46%) Frame = +1 Query: 76 RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVN 255 R SP A M VAP S + T RK + I+ ++ G K+ K W ++ Sbjct: 16 RVSPAQATM-VAPFTGLKSTPVFPTTRKTNSDITSITSNGGKV-------QCMKVWPTLG 67 Query: 256 ARKFQFINFLSTLRK 300 +KF+ +++L L + Sbjct: 68 MKKFETLSYLPPLTR 82
>RBS2_FRIAG (O22572) Ribulose bisphosphate carboxylase small chain 2,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2) Length = 179 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 1/72 (1%) Frame = +1 Query: 82 SPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPG-AKMVGNWGFGSVTKDWESVNA 258 S + A VAP +A+ + K + P++ ++ G + + N G K W V Sbjct: 9 SSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGL 68 Query: 259 RKFQFINFLSTL 294 +KF+ +++L TL Sbjct: 69 KKFETLSYLPTL 80
>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2014 Score = 29.6 bits (65), Expect = 1.9 Identities = 26/82 (31%), Positives = 32/82 (39%), Gaps = 3/82 (3%) Frame = +3 Query: 3 GDRGATRRFPQSSPPLRPAPKTTVPRFAAVSGH-GRRPRRGGALWHVLPHKKEAF*PHQW 179 GDR R P + P RP + SGH G R GG W P++ Sbjct: 1048 GDRQLQRTSPPARTPARPPERKAQIERHLESGHTGPRQSLGG--WQSQERLSGPQSPNRH 1105 Query: 180 PFTSW--CKDGWQLGIWQCYQG 239 P SW K+G LG W +G Sbjct: 1106 PEKSWGSQKEGPSLGGWPELEG 1127
>GCP60_MOUSE (Q8BMP6) Golgi resident protein GCP60 (Acyl-CoA-binding| domain-containing protein 3) (Golgi phosphoprotein 1) (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1) (PBR- and PKA-associated protein 7) (Peripherial benzodiazepine receptor-asso Length = 524 Score = 29.6 bits (65), Expect = 1.9 Identities = 14/55 (25%), Positives = 21/55 (38%) Frame = +1 Query: 61 QKPQCRASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFG 225 ++P +PP APG SG + G + +M +WGFG Sbjct: 24 ERPGAEGAPPQTPPSSAPGNGLGSGASGQQREPGEAAAEGAAEEARRMEQHWGFG 78
>RBS1_BRANA (P05346) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 181 Score = 29.6 bits (65), Expect = 1.9 Identities = 20/69 (28%), Positives = 31/69 (44%) Frame = +1 Query: 88 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 267 P+ A VAP S + RK ++ I+ + V N G S K W V +KF Sbjct: 15 PAQATMVAPFTGLKSSSAFPVTRKANNDITSI-------VSNGGRVSCMKVWPPVGKKKF 67 Query: 268 QFINFLSTL 294 + +++L L Sbjct: 68 ETLSYLPDL 76
>RBS1_FRIAG (O24634) Ribulose bisphosphate carboxylase small chain 1/4,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1/4) Length = 179 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/72 (29%), Positives = 34/72 (47%) Frame = +1 Query: 79 ASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNA 258 A+P A+M VAP S + +KP+ +S L G ++ K W V Sbjct: 17 AAPAQASM-VAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRV-------QCMKVWPIVGL 68 Query: 259 RKFQFINFLSTL 294 +KF+ +++L TL Sbjct: 69 KKFETLSYLPTL 80
>MUTL_RHIME (Q92RP4) DNA mismatch repair protein mutL| Length = 605 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +2 Query: 68 HSAALRRRQRPWTSPPARRRPLACITTQKGSLLTPSVAFHFLVQ 199 H A +R Q PW++ + RPL +G P AF Q Sbjct: 348 HRAGQQRPQEPWSAAASPHRPLRFEEAARGFAEAPQAAFSDFAQ 391
>EPHB3_CHICK (Q07498) Ephrin type-B receptor 3 (EC 2.7.10.1) (Tyrosine-protein| kinase receptor CEK10) (Fragment) Length = 988 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = -1 Query: 360 LLDRAINHISFSTRHITLSGLTQSRKEIYKLELPSIHTF---PVLGNTAKSPIANHLCT 193 L R +++ F R + L+GLT+ R I K+ +TF V G ++KSP H + Sbjct: 358 LCSRCDDNVEFVPRQLGLTGLTERRIYISKVMAHPQYTFEIQAVNGISSKSPYPPHFAS 416
>RBS2_BRANA (P27985) Ribulose bisphosphate carboxylase small chain F1,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit F1) Length = 181 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/69 (26%), Positives = 32/69 (46%) Frame = +1 Query: 88 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 267 P+ A VAP S + RK ++ I+ ++ G ++ S K W V +KF Sbjct: 15 PAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRV-------SCMKVWPPVGKKKF 67 Query: 268 QFINFLSTL 294 + +++L L Sbjct: 68 ETLSYLPDL 76
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 28.5 bits (62), Expect = 4.2 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +1 Query: 118 EAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNW 216 E +PS MY + + SDP S PGA NW Sbjct: 1466 EPSPSSMYGNAEDSSSDPESLAEDPGAAARNNW 1498
>RBS2B_ARATH (P10797) Ribulose bisphosphate carboxylase small chain 2B,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) Length = 181 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/69 (24%), Positives = 32/69 (46%) Frame = +1 Query: 88 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 267 P+ A VAP S + RK ++ I+ ++ G ++ S K W + +KF Sbjct: 15 PAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRV-------SCMKVWPPIGKKKF 67 Query: 268 QFINFLSTL 294 + +++L L Sbjct: 68 ETLSYLPDL 76
>RBS1B_ARATH (P10796) Ribulose bisphosphate carboxylase small chain 1B,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1B) Length = 181 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/69 (24%), Positives = 32/69 (46%) Frame = +1 Query: 88 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 267 P+ A VAP S + RK ++ I+ ++ G ++ S K W + +KF Sbjct: 15 PAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRV-------SCMKVWPPIGKKKF 67 Query: 268 QFINFLSTL 294 + +++L L Sbjct: 68 ETLSYLPDL 76
>RPOC_BUCAI (P57145) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +1 Query: 148 TKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQ 270 TK + D I +SL M+ +W FG V K E++N R F+ Sbjct: 12 TKNEDFDAIK-ISLASPDMIRSWSFGEVKKP-ETINYRTFK 50
>RPOC_BUCAP (P41185) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/41 (39%), Positives = 23/41 (56%) Frame = +1 Query: 148 TKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKFQ 270 TK + D I +SL M+ +W FG V K E++N R F+ Sbjct: 12 TKNEDFDAIK-ISLASPDMIRSWSFGEVKKP-ETINYRTFK 50
>K1683_HUMAN (Q9H0B3) Protein KIAA1683| Length = 1180 Score = 28.1 bits (61), Expect = 5.5 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 5/55 (9%) Frame = +3 Query: 3 GDRGATRRFPQSSPPLRPAPKTTVPRFAAVSG-----HGRRPRRGGALWHVLPHK 152 GD GATR P P + T P A V G P RG A W +K Sbjct: 850 GDNGATRAQPSMPGQAVPCQEDTGPADAGVVGGQSWNRAWEPARGAASWDTWRNK 904
>DPOD3_HUMAN (Q15054) DNA polymerase delta subunit 3 (DNA polymerase delta| subunit p66) Length = 466 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%) Frame = +3 Query: 30 PQSSPPLRPAPKT--TVPRFAAVSGHGRRPRR 119 P SPPL P PKT P + SG +R R+ Sbjct: 353 PPPSPPLEPVPKTEPEPPSVKSSSGENKRKRK 384
>FAS_HUMAN (P49327) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl- Length = 2511 Score = 28.1 bits (61), Expect = 5.5 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +3 Query: 30 PQSSPPLRPAPKTTVPRFAAVSG 98 P + PP PAP T+PR SG Sbjct: 406 PNTQPPPAPAPHATLPRLLRASG 428
>CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal| transduction protein CBL-B) (SH3-binding protein CBL-B) Length = 982 Score = 27.7 bits (60), Expect = 7.2 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = +3 Query: 30 PQSSPPLRPAPKTTVPRFAAVSGHGRRPRRGGALWHVLPH 149 P S PP P +T VP A + G RP L+ LPH Sbjct: 824 PPSQPPPPPPARTCVPEHAMPTASGCRPNSDVDLF--LPH 861
>CADH1_HUMAN (P12830) Epithelial-cadherin precursor (E-cadherin) (Uvomorulin)| (Cadherin-1) (CAM 120/80) (CD324 antigen) [Contains: E-Cad/CTF1; E-Cad/CTF2; E-Cad/CTF3] Length = 882 Score = 27.7 bits (60), Expect = 7.2 Identities = 15/51 (29%), Positives = 20/51 (39%) Frame = +2 Query: 5 RPWRHXXXXXXXXXXXXXXKNHSAALRRRQRPWTSPPARRRPLACITTQKG 157 RP H N S LRR++R W P P++C +KG Sbjct: 124 RPPPHQASVSGIQAELLTFPNSSPGLRRQKRDWVIP-----PISCPENEKG 169
>VGLE_BHV1S (Q08101) Glycoprotein E precursor| Length = 575 Score = 27.7 bits (60), Expect = 7.2 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Frame = +3 Query: 3 GDRGATR---RFPQSSPPLRPAPKTTVPRFAAVSGHGRRPRRGGALWHVLPHKKEAF*P 170 G +GA R R P + P P P T R PRR GA + VLP+ + P Sbjct: 185 GAQGAARDEEREPATGPTPGPPPHRTTTRAP--------PRRHGARFRVLPYHSHVYTP 235
>COAT_PAVHH (P03136) Coat protein VP1 [Contains: Coat protein VP2]| Length = 722 Score = 27.7 bits (60), Expect = 7.2 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -3 Query: 76 GTVVFGAGRRGGEDWGKRRVAP 11 G + F G++ GEDW K+ AP Sbjct: 507 GAIRFNYGKQHGEDWAKQGAAP 528
>RBS3B_ARATH (P10798) Ribulose bisphosphate carboxylase small chain 3B,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) Length = 181 Score = 27.7 bits (60), Expect = 7.2 Identities = 17/69 (24%), Positives = 31/69 (44%) Frame = +1 Query: 88 PSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGAKMVGNWGFGSVTKDWESVNARKF 267 P+ A VAP S + RK + I+ ++ G ++ S K W + +KF Sbjct: 15 PAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRV-------SCMKVWPPIGKKKF 67 Query: 268 QFINFLSTL 294 + +++L L Sbjct: 68 ETLSYLPDL 76
>RBS5_FRIAG (O22645) Ribulose bisphosphate carboxylase small chain 5,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 5) Length = 179 Score = 27.3 bits (59), Expect = 9.4 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +1 Query: 82 SPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPG-AKMVGNWGFGSVTKDWESVNA 258 S + A AP +A+ + K + P++ + G + + N G K W V Sbjct: 9 SSVATAACAAPAQASMVAPFVGLKSASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGL 68 Query: 259 RKFQFINFLSTL 294 +KF+ +++L TL Sbjct: 69 KKFETLSYLPTL 80
>ILVD2_COREF (Q8FMR1) Dihydroxy-acid dehydratase 2 (EC 4.2.1.9) (DAD 2)| Length = 567 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +1 Query: 106 VAPGEAAPSGMYYHTKRKPSDPISGLSLPGA 198 V PGE A GMY + G+SLPG+ Sbjct: 199 VCPGEGACGGMYTANTMASAAEAMGMSLPGS 229
>ILVD1_NOCFA (Q5Z0M2) Dihydroxy-acid dehydratase 1 (EC 4.2.1.9) (DAD 1)| Length = 568 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +1 Query: 76 RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGA 198 RA + + PGE A GMY + G+SLPG+ Sbjct: 190 RADVDAIERAICPGEGACGGMYTANTMASAAEALGMSLPGS 230
>AOTC_XYLFA (Q9PEN0) N-acetylornithine carbamoyltransferase (EC 2.1.3.9)| (AOTCase) Length = 336 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = -1 Query: 192 RK*KATDGVRRLPFCVVIHARGRRL 118 R KATD V P C+ IH G RL Sbjct: 299 RNVKATDAVMDGPNCIAIHEAGNRL 323
>FOSL1_MOUSE (P48755) Fos-related antigen 1 (FRA-1)| Length = 273 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +2 Query: 104 TSPPARRRPLACITTQKGSLLTP 172 +SPPA RP+ CI+ G +L P Sbjct: 192 SSPPAPGRPVPCISLSPGPVLEP 214
>YBHC_ECOLI (P46130) Acyl-CoA thioester hydrolase ybgC precursor (EC 3.1.2.-)| Length = 427 Score = 27.3 bits (59), Expect = 9.4 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 9/46 (19%) Frame = +1 Query: 106 VAPGE--------AAPSGM-YYHTKRKPSDPISGLSLPGAKMVGNW 216 V PGE AAP G+ Y T KP D GLSL G +W Sbjct: 117 VMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADW 162
>ILVD_MYCLE (O06069) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 564 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +1 Query: 76 RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGA 198 RA + + PGE A GMY + G+SLPG+ Sbjct: 186 RADVDAIERAICPGEGACGGMYTANTMASAAEALGMSLPGS 226
>ILVD_MYCTU (P65154) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 575 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +1 Query: 76 RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGA 198 RA + + PGE A GMY + G+SLPG+ Sbjct: 197 RADVDAIERAICPGEGACGGMYTANTMASAAEALGMSLPGS 237
>ILVD_MYCBO (P65155) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 575 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = +1 Query: 76 RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPISGLSLPGA 198 RA + + PGE A GMY + G+SLPG+ Sbjct: 197 RADVDAIERAICPGEGACGGMYTANTMASAAEALGMSLPGS 237 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.128 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,662,701 Number of Sequences: 219361 Number of extensions: 1220552 Number of successful extensions: 3258 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3089 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3256 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
