ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl17e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GLSA_RHILO (Q98NB7) Glutaminase (EC 3.5.1.2) 29 3.5
2YCDA_DROME (Q9VGW1) Putative cadherin CG4509 precursor 28 4.5
3NHR6_CAEEL (P41829) Nuclear hormone receptor family member nhr-6... 28 4.5
4CNA_STAAU (Q53654) Collagen adhesin precursor 28 5.9
5ZN265_RAT (O35986) Zinc finger protein 265 (Zinc finger, splicing) 28 7.8
6GSHRP_ARATH (P42770) Glutathione reductase, chloroplast precurso... 28 7.8
7ZN265_HUMAN (O95218) Zinc finger protein 265 (Zinc finger, splic... 28 7.8
8ZN265_MOUSE (Q9R020) Zinc finger protein 265 (Zinc finger, splic... 28 7.8

>GLSA_RHILO (Q98NB7) Glutaminase (EC 3.5.1.2)|
          Length = 315

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -3

Query: 81  SRDF-FRIGIPGLRSIGWAEIGVVPCV 4
           S DF FR+GIPG   +G   +G+VP V
Sbjct: 252 SGDFAFRVGIPGKSGVGGGILGIVPGV 278



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>YCDA_DROME (Q9VGW1) Putative cadherin CG4509 precursor|
          Length = 1483

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 28   RPTYRSKPRDSNPEEIPRENRSKPRSSSLRIPQRRSGA 141
            RP  +S P DS PE +PR +R   R SS R  ++++ +
Sbjct: 1143 RPARKSSPTDSQPEAMPRLSR---RDSSKRGSRKQTSS 1177



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>NHR6_CAEEL (P41829) Nuclear hormone receptor family member nhr-6 (Cnr8)|
          Length = 619

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 46  KPRDSNPEEIPRENRSKPRSSSLRIPQRRSGA 141
           KP  +  E IP E   KP SSS R+P   + +
Sbjct: 109 KPTKTEVESIPEEFEQKPSSSSHRLPSEMNAS 140



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>CNA_STAAU (Q53654) Collagen adhesin precursor|
          Length = 1183

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 13   HHTDFRPTYRSKPRDSNPEEIPRENRSKPRSSSLRIPQ 126
            H    +PT   KP   + ++ P++N++KP +    +P+
Sbjct: 1116 HSNKVKPTPPDKPSKVDKDDQPKDNKTKPENPLKELPK 1153



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>ZN265_RAT (O35986) Zinc finger protein 265 (Zinc finger, splicing)|
          Length = 332

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 43  SKPRDSNPEEIPRENRSKPRSSSLRIPQRRSGATS 147
           S+  DSN ++  R +RSK RSS  R   R S  +S
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSS 222



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>GSHRP_ARATH (P42770) Glutathione reductase, chloroplast precursor (EC 1.8.1.7)|
           (GR) (GRase)
          Length = 565

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 213 RRIEFHPARRPHAAVAVGGGGFQMET 290
           R IEFH    P A +  G G F ++T
Sbjct: 314 RGIEFHTEESPEAIIKAGDGSFSLKT 339



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>ZN265_HUMAN (O95218) Zinc finger protein 265 (Zinc finger, splicing)|
          Length = 337

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 43  SKPRDSNPEEIPRENRSKPRSSSLRIPQRRSGATS 147
           S+  DSN ++  R +RSK RSS  R   R S  +S
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSS 222



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>ZN265_MOUSE (Q9R020) Zinc finger protein 265 (Zinc finger, splicing) (Fragment)|
          Length = 326

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 43  SKPRDSNPEEIPRENRSKPRSSSLRIPQRRSGATS 147
           S+  DSN ++  R +RSK RSS  R   R S  +S
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSS 222


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,157,739
Number of Sequences: 219361
Number of extensions: 696966
Number of successful extensions: 2690
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2689
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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