ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17d06 |
|---|---|
| Clone Library Name | barley_pub |
>IF3A_MAIZE (Q9XHR2) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) Length = 962 Score = 202 bits (514), Expect = 3e-52 Identities = 100/104 (96%), Positives = 104/104 (100%) Frame = +2 Query: 119 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 298 MATFAKPENALKRAEELIHVGQKQ+ALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL Sbjct: 1 MATFAKPENALKRAEELIHVGQKQSALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 60 Query: 299 RKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEAR 430 RKGRFAKDGLIQYRIVCQQVNVSSLE+VIKHFMQLSNEKAE+A+ Sbjct: 61 RKGRFAKDGLIQYRIVCQQVNVSSLEDVIKHFMQLSNEKAEQAK 104
>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (p114) Length = 987 Score = 182 bits (462), Expect = 3e-46 Identities = 88/104 (84%), Positives = 99/104 (95%) Frame = +2 Query: 119 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 298 MA FAKPENALKRA+ELI+VGQKQ ALQALHDLITSKRYR+WQKPLEKIM KY++LCVDL Sbjct: 1 MANFAKPENALKRADELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYLDLCVDL 60 Query: 299 RKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEAR 430 ++GRFAKDGLIQYRIVCQQVNVSSLEEVIKHF+ L+ +KAE+AR Sbjct: 61 KRGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFLHLATDKAEQAR 104
>IF3A_TOBAC (Q40554) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (PNLA-35) Length = 958 Score = 179 bits (455), Expect = 2e-45 Identities = 88/104 (84%), Positives = 97/104 (93%) Frame = +2 Query: 119 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 298 MATFAKPENALKRAEELI VGQKQ ALQALHDLITS+RYR+WQK LE+IM KYVELCVD+ Sbjct: 1 MATFAKPENALKRAEELITVGQKQEALQALHDLITSRRYRAWQKTLERIMFKYVELCVDM 60 Query: 299 RKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEAR 430 R+GRFAKDGLIQYRIVCQQVN++SLEEVIKHFM L+ E+AE AR Sbjct: 61 RRGRFAKDGLIQYRIVCQQVNINSLEEVIKHFMHLATERAELAR 104
>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin) Length = 1344 Score = 127 bits (320), Expect = 9e-30 Identities = 58/103 (56%), Positives = 81/103 (78%) Frame = +2 Query: 122 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLR 301 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+WQK E IM+KY+ELCVDLR Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLR 62 Query: 302 KGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEAR 430 K AK+GL QY+ +CQQVN+ SLE+V++ +++L+ EK E A+ Sbjct: 63 KSHLAKEGLYQYKNICQQVNIKSLEDVVRAYLKLAEEKTEAAK 105
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 127 bits (318), Expect = 1e-29 Identities = 57/103 (55%), Positives = 81/103 (78%) Frame = +2 Query: 122 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLR 301 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+WQK E IM+KY+ELCVDLR Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLR 62 Query: 302 KGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEAR 430 K AK+GL QY+ +CQQVN+ SLE+V++ +++++ EK E A+ Sbjct: 63 KSHLAKEGLYQYKNICQQVNIKSLEDVVRAYLKMAEEKTEAAK 105
>IF3A_CAEEL (P34339) Probable eukaryotic translation initiation factor 3| subunit 10 (eIF-3 theta) (eIF3a) (Egg-laying defective protein 45) Length = 1076 Score = 114 bits (285), Expect = 1e-25 Identities = 53/101 (52%), Positives = 75/101 (74%) Frame = +2 Query: 128 FAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKG 307 F KPE ALKRAEELI VG++ AL LHD I ++R++ W E+IM+K++ELCVDL+K Sbjct: 6 FQKPEAALKRAEELIQVGKESDALDTLHDTIKARRHKQWTTVHEQIMIKHMELCVDLKKQ 65 Query: 308 RFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEAR 430 AKD L QY+ + QQ+NV SLE V+ HF++L+ ++ E+A+ Sbjct: 66 HLAKDALFQYKALTQQINVKSLETVVVHFLKLAEQRTEDAQ 106
>IF3A_SCHPO (O74760) Probable eukaryotic translation initiation factor 3 110| kDa subunit (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 932 Score = 100 bits (250), Expect = 1e-21 Identities = 49/100 (49%), Positives = 74/100 (74%), Gaps = 1/100 (1%) Frame = +2 Query: 134 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQK-PLEKIMMKYVELCVDLRKGR 310 KPEN L+ A+ELI + Q +ALQ+LH+ I KR R+ Q LE IMM+++ELCV LRKG+ Sbjct: 7 KPENVLRLADELIALDQHSSALQSLHETIVLKRSRNAQGFSLEPIMMRFIELCVHLRKGK 66 Query: 311 FAKDGLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEEAR 430 AK+GL Y+ Q +V+++E V+KHF++L+N++ +EA+ Sbjct: 67 IAKEGLYTYKNAVQNTSVTAIENVVKHFIELANKRVQEAQ 106
>IF3A_YEAST (P38249) Eukaryotic translation initiation factor 3 110 kDa subunit| (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 964 Score = 84.3 bits (207), Expect = 1e-16 Identities = 46/98 (46%), Positives = 68/98 (69%), Gaps = 4/98 (4%) Frame = +2 Query: 134 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKP--LEKIMMKYVELCVDLRKG 307 +PENA+KRA+ELI VG+KQAALQ+LHD IT++R R W P +E ++ K++E+ V+L+KG Sbjct: 7 RPENAIKRADELISVGEKQAALQSLHDFITARRIR-WATPSTVEPVVFKFLEIGVELKKG 65 Query: 308 RFAKDGLIQYRIVCQ--QVNVSSLEEVIKHFMQLSNEK 415 + KDGL QY+ + Q + S+ V + F+ L K Sbjct: 66 KLLKDGLHQYKKLIQGSTEGLVSVGAVARKFIDLVESK 103
>BPAEB_HUMAN (Q8WXK8) Bullous pemphigoid antigen 1, isoform 7 (Bullous pemphigoid| antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) (Fragment) Length = 3060 Score = 31.6 bits (70), Expect = 0.85 Identities = 20/66 (30%), Positives = 32/66 (48%) Frame = +2 Query: 188 QAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKGRFAKDGLIQYRIVCQQVNVS 367 QA L+ L D T R Q + ++ + C DL+ + GLI +I+CQ +S Sbjct: 1245 QAVLRGLIDYDTGIRLLETQLMISGLISPELRKCFDLKDAK--SHGLIDEQILCQLKELS 1302 Query: 368 SLEEVI 385 +E+I Sbjct: 1303 KAKEII 1308
>IF2A_THEAC (Q9HIX3) Translation initiation factor 2 alpha subunit| (eIF-2-alpha) (aIF2-alpha) Length = 254 Score = 30.0 bits (66), Expect = 2.5 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = +2 Query: 323 GLIQYRIVCQQVNVSSLEEVIKHFMQLSNEKAEE 424 G +YRIV + + EE++K +Q+ NEKA++ Sbjct: 211 GAPRYRIVVKDKDYKKAEEILKKVVQIVNEKAKK 244
>RAD50_PYRAB (Q9UZC8) DNA double-strand break repair rad50 ATPase| Length = 880 Score = 30.0 bits (66), Expect = 2.5 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Frame = +2 Query: 131 AKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKGR 310 A + K+ E+ + K ++ ++ R K LE I K EL + + K + Sbjct: 201 ANEDELTKKLSEINEISSKLPPIRG-----ELEKVRENVKELESIKGKISELKIQVEKLK 255 Query: 311 FAKDGL------IQYRIVCQQVNVSSLEEVIKHFMQLSNEKAE 421 K GL I+ I ++ +S LEE++K +L ++ E Sbjct: 256 GRKKGLEEKIVQIERSIEEKKAKISELEEIVKDIPKLQEKEKE 298
>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)| Length = 1691 Score = 29.6 bits (65), Expect = 3.2 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Frame = +2 Query: 128 FAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIM---MKYVELCVDL 298 FAKPE+ + + + +A + LH ++ R + +EK M ++VE C Sbjct: 1005 FAKPESQILESGREQMDDEARAIISKLHKVLRPYLLRRLKADVEKQMPAKYEHVEFCRLS 1064 Query: 299 RKGRFAKDGLIQYRIVCQQVNVSSLEEVIKHFMQL 403 ++ R DG + + +N + +I MQL Sbjct: 1065 KRQRELYDGFLSRTDTKETLNSGNYLSIINCLMQL 1099
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 28.9 bits (63), Expect = 5.5 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAAL-----QALHDLITSKRYRSWQKPLEKI 265 RP+ A+ +PE L E+L H Q + + L + ++ + W+K L Sbjct: 1422 RPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIF 1481 Query: 266 MMKYVELCVDLRK 304 + K+ E D RK Sbjct: 1482 VSKFTEF--DARK 1492
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 28.5 bits (62), Expect = 7.2 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAAL-----QALHDLITSKRYRSWQKPLEKI 265 RP+ A+ +PE L E+L H Q + + L + ++ + W+K L Sbjct: 1422 RPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIF 1481 Query: 266 MMKYVELCVDLRK 304 + K+ E D RK Sbjct: 1482 VSKFTEF--DARK 1492
>SL9A1_PIG (P48762) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 818 Score = 28.1 bits (61), Expect = 9.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 500 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 558 Query: 281 ELCV 292 + C+ Sbjct: 559 KKCL 562
>SL9A1_BOVIN (Q28036) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 817 Score = 28.1 bits (61), Expect = 9.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 500 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 558 Query: 281 ELCV 292 + C+ Sbjct: 559 KKCL 562
>SL9A1_CRIGR (P48761) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 822 Score = 28.1 bits (61), Expect = 9.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 504 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 562 Query: 281 ELCV 292 + C+ Sbjct: 563 KKCL 566
>SL9A1_RABIT (P23791) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 816 Score = 28.1 bits (61), Expect = 9.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 500 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 558 Query: 281 ELCV 292 + C+ Sbjct: 559 KKCL 562
>SL9A1_HUMAN (P19634) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) (Na(+)/H(+) antiporter, amiloride-sensitive) (APNH) Length = 815 Score = 28.1 bits (61), Expect = 9.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 500 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 558 Query: 281 ELCV 292 + C+ Sbjct: 559 KKCL 562
>PEX10_MACFA (Q8HXW8) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) Length = 326 Score = 28.1 bits (61), Expect = 9.4 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = +2 Query: 107 LAPAMATFAKPENALKRAE--ELIHVGQKQAALQALHDLITSKRYRSWQKPLE 259 +APA A+ P ++ A+ E G + AA ALH L ++++ W+K +E Sbjct: 1 MAPAAAS---PPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVE 50
>PEX10_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) (RING finger protein 69) Length = 326 Score = 28.1 bits (61), Expect = 9.4 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = +2 Query: 107 LAPAMATFAKPENALKRAE--ELIHVGQKQAALQALHDLITSKRYRSWQKPLE 259 +APA A+ P ++ A+ E G + AA ALH L ++++ W+K +E Sbjct: 1 MAPAAAS---PPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVE 50
>SL9A1_RAT (P26431) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 820 Score = 28.1 bits (61), Expect = 9.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 504 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 562 Query: 281 ELCV 292 + C+ Sbjct: 563 KKCL 566
>SL9A1_MOUSE (Q61165) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 820 Score = 28.1 bits (61), Expect = 9.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 504 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 562 Query: 281 ELCV 292 + C+ Sbjct: 563 KKCL 566 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,041,581 Number of Sequences: 219361 Number of extensions: 800759 Number of successful extensions: 2394 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2330 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2392 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
