>TILS_PROMM (Q7V987) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 343

 Score = 32.0 bits (71), Expect = 0.62
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 30  IPTRSHLTWLWLEPASRPSAPAMREEVRSSSAAPADPP 143
           I  R+ L   WL+ +  PS PA++ E  S S AP  PP
Sbjct: 282 ITARTTLLAYWLKRSGAPSLPAVQLEQISQSIAPGKPP 319

>RPE65_AMBTI (Q9YI25) Retinal pigment epithelium-specific 65 kDa protein|
          Length = 532

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 3   VHHSLP--LSSIPTRSHLTWLWLEPASRPSAP 92
           ++H +P  LS +  ++  TW+W EP + PS P
Sbjct: 438 LNHFVPDRLSKLNVKTKETWVWQEPDTYPSEP 469

>D1IP_HUMAN (Q9NYX4) D1 dopamine receptor-interacting protein calcyon|
          Length = 217

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 33  PTRSHLTWLWLEPASRPSAPAMREEVRSSSAAPADPP 143
           PT++       EP  +PSA A +E  R ++ + A PP
Sbjct: 179 PTQAGAAAAATEPPGKPSAKAEKEAARKAAGSAAPPP 215

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 12   SLPLSSIPTRSHLTWLWLEPASRPSAPAMREEVRSSSAAPADPP 143
            S P+++ P+    T     P + PS+P       SS+  P+ PP
Sbjct: 1682 SSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPP 1725

>RAD52_ASHGO (Q756F4) DNA repair and recombination protein RAD52|
          Length = 435

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 63  LEPASRPSAPAMREEVRSSSAAPADPPL 146
           L PA RP A  MR E   ++ AP++PPL
Sbjct: 198 LPPAPRPGA--MRPEAAHAAPAPSEPPL 223


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,939,119
Number of Sequences: 219361
Number of extensions: 728800
Number of successful extensions: 2245
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2239
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)