ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17d05 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476650.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3250 Score = 281 bits (142), Expect = 9e-73 Identities = 286/334 (85%) Strand = Plus / Plus Query: 91 ccgccatgagagaggaggtcaggagctcgtcggcggcgcccgcggacccgccgctgcgct 150 |||||||| | |||||||| ||||||||||||||||||| | |||||||||| ||||| Sbjct: 67 ccgccatgcgcgaggaggtgcggagctcgtcggcggcgccgcccgacccgccgccgcgct 126 Query: 151 cagactcgccgcccgccaccccggtcgccagttctgccggtgcttcatctcctcccgcgc 210 | | |||||||||||||||||| ||||||||||| || ||||| ||||| || || || | Sbjct: 127 cggcctcgccgcccgccacccccgtcgccagttcggctggtgcatcatcaccacctgcac 186 Query: 211 aaacaaatgtagctaccatagattggttaggcagtgggcagttatctaaagttgggtcat 270 ||||||||| ||||| ||||||||||||||| ||| || |||| ||||| | |||| Sbjct: 187 aaacaaatgcagctagcatagattggttaggtggtgagccaatatccaaagtggaatcat 246 Query: 271 cgtcccatgttgcttcacatgctgctcaaccttctcttagtactaatgctgttggagctg 330 | ||||| ||||| |||||||| ||| |||||||||||||||||||||| |||||||| Sbjct: 247 catcccagattgctccacatgctcctcggccttctcttagtactaatgctgctggagctg 306 Query: 331 ctatggatttctcacaaccatcatgtagaccatgggaacgaggagatttacttcatcgac 390 | |||||||||| |||||||| ||||||||||||||||||||||| || |||| |||| Sbjct: 307 ccgtggatttctctcaaccatcttgtagaccatgggaacgaggagacttgcttcggcgac 366 Query: 391 tggccacatttaagccttcaacatgggcttctaa 424 |||||||||| ||| ||||||||||||||||||| Sbjct: 367 tggccacattcaagtcttcaacatgggcttctaa 400
>dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full insert sequence Length = 3250 Score = 281 bits (142), Expect = 9e-73 Identities = 286/334 (85%) Strand = Plus / Plus Query: 91 ccgccatgagagaggaggtcaggagctcgtcggcggcgcccgcggacccgccgctgcgct 150 |||||||| | |||||||| ||||||||||||||||||| | |||||||||| ||||| Sbjct: 67 ccgccatgcgcgaggaggtgcggagctcgtcggcggcgccgcccgacccgccgccgcgct 126 Query: 151 cagactcgccgcccgccaccccggtcgccagttctgccggtgcttcatctcctcccgcgc 210 | | |||||||||||||||||| ||||||||||| || ||||| ||||| || || || | Sbjct: 127 cggcctcgccgcccgccacccccgtcgccagttcggctggtgcatcatcaccacctgcac 186 Query: 211 aaacaaatgtagctaccatagattggttaggcagtgggcagttatctaaagttgggtcat 270 ||||||||| ||||| ||||||||||||||| ||| || |||| ||||| | |||| Sbjct: 187 aaacaaatgcagctagcatagattggttaggtggtgagccaatatccaaagtggaatcat 246 Query: 271 cgtcccatgttgcttcacatgctgctcaaccttctcttagtactaatgctgttggagctg 330 | ||||| ||||| |||||||| ||| |||||||||||||||||||||| |||||||| Sbjct: 247 catcccagattgctccacatgctcctcggccttctcttagtactaatgctgctggagctg 306 Query: 331 ctatggatttctcacaaccatcatgtagaccatgggaacgaggagatttacttcatcgac 390 | |||||||||| |||||||| ||||||||||||||||||||||| || |||| |||| Sbjct: 307 ccgtggatttctctcaaccatcttgtagaccatgggaacgaggagacttgcttcggcgac 366 Query: 391 tggccacatttaagccttcaacatgggcttctaa 424 |||||||||| ||| ||||||||||||||||||| Sbjct: 367 tggccacattcaagtcttcaacatgggcttctaa 400
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 194 bits (98), Expect = 2e-46 Identities = 209/246 (84%) Strand = Plus / Minus Query: 179 cagttctgccggtgcttcatctcctcccgcgcaaacaaatgtagctaccatagattggtt 238 |||||| || ||||| ||||| || || || |||||||||| ||||| |||||||||||| Sbjct: 2671602 cagttcggctggtgcatcatcaccacctgcacaaacaaatgcagctagcatagattggtt 2671543 Query: 239 aggcagtgggcagttatctaaagttgggtcatcgtcccatgttgcttcacatgctgctca 298 ||| ||| || |||| ||||| | ||||| ||||| ||||| |||||||| ||| Sbjct: 2671542 aggtggtgagccaatatccaaagtggaatcatcatcccagattgctccacatgctcctcg 2671483 Query: 299 accttctcttagtactaatgctgttggagctgctatggatttctcacaaccatcatgtag 358 |||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||| Sbjct: 2671482 gccttctcttagtactaatgctgctggagctgccgtggatttctctcaaccatcttgtag 2671423 Query: 359 accatgggaacgaggagatttacttcatcgactggccacatttaagccttcaacatgggc 418 |||||||||||||||||| || |||| |||||||||||||| ||| ||||||||||||| Sbjct: 2671422 accatgggaacgaggagacttgcttcggcgactggccacattcaagtcttcaacatgggc 2671363 Query: 419 ttctaa 424 |||||| Sbjct: 2671362 ttctaa 2671357 Score = 93.7 bits (47), Expect = 4e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 91 ccgccatgagagaggaggtcaggagctcgtcggcggcgcccgcggacccgccgctgcgct 150 |||||||| | |||||||| ||||||||||||||||||| | |||||||||| ||||| Sbjct: 2672576 ccgccatgcgcgaggaggtgcggagctcgtcggcggcgccgcccgacccgccgccgcgct 2672517 Query: 151 cagactcgccgcccgccaccccggtcgccag 181 | | |||||||||||||||||| |||||||| Sbjct: 2672516 cggcctcgccgcccgccacccccgtcgccag 2672486
>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1027_G06 Length = 121885 Score = 194 bits (98), Expect = 2e-46 Identities = 209/246 (84%) Strand = Plus / Minus Query: 179 cagttctgccggtgcttcatctcctcccgcgcaaacaaatgtagctaccatagattggtt 238 |||||| || ||||| ||||| || || || |||||||||| ||||| |||||||||||| Sbjct: 97320 cagttcggctggtgcatcatcaccacctgcacaaacaaatgcagctagcatagattggtt 97261 Query: 239 aggcagtgggcagttatctaaagttgggtcatcgtcccatgttgcttcacatgctgctca 298 ||| ||| || |||| ||||| | ||||| ||||| ||||| |||||||| ||| Sbjct: 97260 aggtggtgagccaatatccaaagtggaatcatcatcccagattgctccacatgctcctcg 97201 Query: 299 accttctcttagtactaatgctgttggagctgctatggatttctcacaaccatcatgtag 358 |||||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||| Sbjct: 97200 gccttctcttagtactaatgctgctggagctgccgtggatttctctcaaccatcttgtag 97141 Query: 359 accatgggaacgaggagatttacttcatcgactggccacatttaagccttcaacatgggc 418 |||||||||||||||||| || |||| |||||||||||||| ||| ||||||||||||| Sbjct: 97140 accatgggaacgaggagacttgcttcggcgactggccacattcaagtcttcaacatgggc 97081 Query: 419 ttctaa 424 |||||| Sbjct: 97080 ttctaa 97075 Score = 93.7 bits (47), Expect = 4e-16 Identities = 80/91 (87%) Strand = Plus / Minus Query: 91 ccgccatgagagaggaggtcaggagctcgtcggcggcgcccgcggacccgccgctgcgct 150 |||||||| | |||||||| ||||||||||||||||||| | |||||||||| ||||| Sbjct: 98294 ccgccatgcgcgaggaggtgcggagctcgtcggcggcgccgcccgacccgccgccgcgct 98235 Query: 151 cagactcgccgcccgccaccccggtcgccag 181 | | |||||||||||||||||| |||||||| Sbjct: 98234 cggcctcgccgcccgccacccccgtcgccag 98204
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 351 tcatgtagaccatgggaacgaggagatttacttcatcgactggccacatttaagccttca 410 |||||||| ||||||||||| ||||| ||||||| ||||||||| |||| ||||||| || Sbjct: 32294054 tcatgtaggccatgggaacgcggagacttacttcgtcgactggcaacatataagcctaca 32293995 Query: 411 acatgggcttcta 423 || |||||||||| Sbjct: 32293994 acttgggcttcta 32293982
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 351 tcatgtagaccatgggaacgaggagatttacttcatcgactggccacatttaagccttca 410 |||||||| ||||||||||| ||||| ||||||| ||||||||| |||| ||||||| || Sbjct: 27821 tcatgtaggccatgggaacgcggagacttacttcgtcgactggcaacatataagcctaca 27762 Query: 411 acatgggcttcta 423 || |||||||||| Sbjct: 27761 acttgggcttcta 27749
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Minus Query: 351 tcatgtagaccatgggaacgaggagatttacttcatcgactggccacatttaagccttca 410 |||||||| ||||||||||| ||||| ||||||| ||||||||| |||| ||||||| || Sbjct: 32384564 tcatgtaggccatgggaacgcggagacttacttcgtcgactggcaacatataagcctaca 32384505 Query: 411 acatgggcttcta 423 || |||||||||| Sbjct: 32384504 acttgggcttcta 32384492
>dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full insert sequence Length = 3325 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 351 tcatgtagaccatgggaacgaggagatttacttcatcgactggccacatttaagccttca 410 |||||||| ||||||||||| ||||| ||||||| ||||||||| |||| ||||||| || Sbjct: 314 tcatgtaggccatgggaacgcggagacttacttcgtcgactggcaacatataagcctaca 373 Query: 411 acatgggcttcta 423 || |||||||||| Sbjct: 374 acttgggcttcta 386
>ref|NM_101582.2| Arabidopsis thaliana unknown protein AT1G17210 mRNA, complete cds Length = 3348 Score = 44.1 bits (22), Expect = 0.37 Identities = 49/58 (84%) Strand = Plus / Plus Query: 354 tgtagaccatgggaacgaggagatttacttcatcgactggccacatttaagccttcaa 411 |||||| ||||||| ||||||||||||||| || || ||||| || |||||||||| Sbjct: 340 tgtagaacatgggatagaggagatttacttcgacgtcttgccactttcaagccttcaa 397
>gb|AC007651.2| Arabidopsis thaliana chromosome I BAC F20D23 genomic sequence, complete sequence Length = 114935 Score = 44.1 bits (22), Expect = 0.37 Identities = 49/58 (84%) Strand = Plus / Plus Query: 354 tgtagaccatgggaacgaggagatttacttcatcgactggccacatttaagccttcaa 411 |||||| ||||||| ||||||||||||||| || || ||||| || |||||||||| Sbjct: 39231 tgtagaacatgggatagaggagatttacttcgacgtcttgccactttcaagccttcaa 39288
>gb|AC000078.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 33e In DGCR Region, complete sequence Length = 44426 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 45 cacctcacctggctctggctgg 66 |||||||||||||||||||||| Sbjct: 23380 cacctcacctggctctggctgg 23401
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 cgcatcgaggccgagcgcgcccgcc 95 ||||||||| ||||||||||||||| Sbjct: 2952801 cgcatcgagcccgagcgcgcccgcc 2952777
>gb|AC005105.3| Homo sapiens BAC clone CTA-491N20 from 7, complete sequence Length = 177206 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 97 tgagagaggaggtcaggagct 117 ||||||||||||||||||||| Sbjct: 52952 tgagagaggaggtcaggagct 52932
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 cgcatcgaggccgagcgcgcccgcc 95 ||||||||| ||||||||||||||| Sbjct: 1131404 cgcatcgagcccgagcgcgcccgcc 1131380
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 71 cgcatcgaggccgagcgcgcccgcc 95 ||||||||| ||||||||||||||| Sbjct: 725999 cgcatcgagcccgagcgcgcccgcc 725975
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 122 ggcggcgcccgcggacccgccgctg 146 |||||||||||||||| |||||||| Sbjct: 3234636 ggcggcgcccgcggacgcgccgctg 3234660 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tcgaggccgagcgcgcccgc 94 |||||||||||||||||||| Sbjct: 2151670 tcgaggccgagcgcgcccgc 2151689
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 121 cggcggcgcccgcggacccgccgctgcgc 149 ||||||||||| |||||| |||||||||| Sbjct: 3525958 cggcggcgccctcggaccggccgctgcgc 3525930
>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome Length = 150715 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 aggagctcgtcggcggcgcc 130 |||||||||||||||||||| Sbjct: 33502 aggagctcgtcggcggcgcc 33483
>ref|XM_508471.1| PREDICTED: Pan troglodytes similar to hypothetical protein FLJ32009 (LOC451233), mRNA Length = 3439 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gccggtgcttcatctcctcc 205 |||||||||||||||||||| Sbjct: 3072 gccggtgcttcatctcctcc 3091
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 ctcgccgcccgccaccccggtcgc 178 |||||||| ||||||||||||||| Sbjct: 4700670 ctcgccgcacgccaccccggtcgc 4700693
>gb|BC077719.1| Homo sapiens von Willebrand factor C and EGF domains, mRNA (cDNA clone IMAGE:6305035), complete cds Length = 3385 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gccggtgcttcatctcctcc 205 |||||||||||||||||||| Sbjct: 2490 gccggtgcttcatctcctcc 2509
>gb|BC052564.1| Homo sapiens von Willebrand factor C and EGF domains, mRNA (cDNA clone IMAGE:6305411), complete cds Length = 3385 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gccggtgcttcatctcctcc 205 |||||||||||||||||||| Sbjct: 2490 gccggtgcttcatctcctcc 2509
>gb|BC042143.1| Homo sapiens von Willebrand factor C and EGF domains, mRNA (cDNA clone IMAGE:5930956), partial cds Length = 3385 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gccggtgcttcatctcctcc 205 |||||||||||||||||||| Sbjct: 2490 gccggtgcttcatctcctcc 2509
>gb|AY131229.2| Streptomyces sp. 139 exopolysaccharide gene cluster, complete sequence Length = 31310 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 cggcgcccgcggacccgccg 143 |||||||||||||||||||| Sbjct: 26728 cggcgcccgcggacccgccg 26747
>gb|AC090195.5| Homo sapiens chromosome 8, clone RP11-366K18, complete sequence Length = 121721 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cacctcacctggctctggct 64 |||||||||||||||||||| Sbjct: 7566 cacctcacctggctctggct 7547
>dbj|AK056571.1| Homo sapiens cDNA FLJ32009 fis, clone NT2RP7009498, weakly similar to FIBULIN-1, ISOFORM A PRECURSOR Length = 3292 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gccggtgcttcatctcctcc 205 |||||||||||||||||||| Sbjct: 2416 gccggtgcttcatctcctcc 2435
>gb|AE012049.1| Xanthomonas axonopodis pv. citri str. 306, section 427 of 469 of the complete genome Length = 10499 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 ctcgccgcccgccaccccggtcgc 178 |||||||| ||||||||||||||| Sbjct: 8052 ctcgccgcacgccaccccggtcgc 8075
>gb|AF499022.1| Baboon herpesvirus 2 strain OU1-76 terminase gene, partial cds Length = 363 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 aggagctcgtcggcggcgcc 130 |||||||||||||||||||| Sbjct: 65 aggagctcgtcggcggcgcc 46
>gb|AF499021.1| Cercopithecine herpesvirus 2 strain B264 terminase gene, partial cds Length = 363 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 aggagctcgtcggcggcgcc 130 |||||||||||||||||||| Sbjct: 65 aggagctcgtcggcggcgcc 46
>gb|AC022073.13| Homo sapiens chr12 BAC RP11-674J14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182247 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 aaacaaatgtagctaccata 230 |||||||||||||||||||| Sbjct: 122156 aaacaaatgtagctaccata 122137
>gb|AC084082.5| Homo sapiens chromosome 8, clone RP11-220B24, complete sequence Length = 187204 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cacctcacctggctctggct 64 |||||||||||||||||||| Sbjct: 13687 cacctcacctggctctggct 13706
>ref|NM_152718.1| Homo sapiens von Willebrand factor C and EGF domains (VWCE), mRNA Length = 3292 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gccggtgcttcatctcctcc 205 |||||||||||||||||||| Sbjct: 2416 gccggtgcttcatctcctcc 2435
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tcgaggccgagcgcgcccgc 94 |||||||||||||||||||| Sbjct: 122075 tcgaggccgagcgcgcccgc 122094
>gb|AY205235.1| Homo sapiens URG11 mRNA, complete cds Length = 3076 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 gccggtgcttcatctcctcc 205 |||||||||||||||||||| Sbjct: 2166 gccggtgcttcatctcctcc 2185
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 gctcgtcggcggcgcccgcg 134 |||||||||||||||||||| Sbjct: 2792255 gctcgtcggcggcgcccgcg 2792236 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 cggcggcgcccgcggacccg 140 |||||||||||||||||||| Sbjct: 2453693 cggcggcgcccgcggacccg 2453674
>gb|AE004982.1| Halobacterium sp. NRC-1 section 13 of 170 of the complete genome Length = 13571 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cgcatcgaggccgagcgcgc 90 |||||||||||||||||||| Sbjct: 11958 cgcatcgaggccgagcgcgc 11939
>gb|DQ149153.1| Cercopithecine herpesvirus 16 strain X313, complete genome Length = 156487 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 aggagctcgtcggcggcgcc 130 |||||||||||||||||||| Sbjct: 34678 aggagctcgtcggcggcgcc 34659
>dbj|AP003037.2| Homo sapiens genomic DNA, chromosome 11 clone:CTD-2331C18, complete sequences Length = 121567 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gccggtgcttcatctcctcc 205 |||||||||||||||||||| Sbjct: 39149 gccggtgcttcatctcctcc 39130 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,755,254 Number of Sequences: 3902068 Number of extensions: 3755254 Number of successful extensions: 69014 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67678 Number of HSP's gapped (non-prelim): 1332 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
