ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl17d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MNN1_YEAST (P39106) Alpha-1,3-mannosyltransferase MNN1 (EC 2.4.1.-) 30 1.8
2Y1218_METJA (Q58615) Hypothetical protein MJ1218 28 5.3
3LEC1_CYTSE (P22970) Anti-H(O) lectin I (CSA-I) 27 9.1
4ONCA_TAETA (P22080) Oncosphere antigen A (Fragment) 27 9.1

>MNN1_YEAST (P39106) Alpha-1,3-mannosyltransferase MNN1 (EC 2.4.1.-)|
          Length = 762

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 384 DESSF*KTTCMLMNSLNSIFPDVDPERTEGATVFVFPELRSPFSQKRTTE 235
           D+ S  +    L+ +LN+ FP+ DP+  +    F F     PF    TTE
Sbjct: 209 DKMSKERVQSKLIKTLNATFPNYDPDNFKKYDQFEFEHKMFPFINNFTTE 258



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>Y1218_METJA (Q58615) Hypothetical protein MJ1218|
          Length = 425

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
 Frame = +2

Query: 131 LRTKTKKDAAIHVDFNIFIQEVSPWPPSESLKSLRSVVLFWENGERNSGKTNTVAPSVRS 310
           L+++TK     HVD  IF     P PP E  K +  ++  ++N      K   V    + 
Sbjct: 135 LKSQTKGTGIPHVDKKIFENIKIPLPPLEEQKQIAKILSDFDNLIGTINKQIEVLNKAKK 194

Query: 311 GS-----TSGKIEFNEFISIQVVFQKED 379
           G      T G  E   F   ++    ED
Sbjct: 195 GMMKKLFTKGVFEHKSFKKSEIGEIPED 222



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>LEC1_CYTSE (P22970) Anti-H(O) lectin I (CSA-I)|
          Length = 244

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 17/71 (23%)
 Frame = +2

Query: 161 IHVDFNIFIQEV-SPWPPS--------ESLKSLRSVVLFWENGE--------RNSGKTNT 289
           I V+F+ +  +  +PW P          S+KS+++V   W NGE        R   K+ T
Sbjct: 124 IAVEFDTYFGKTYNPWDPDFKHIGVDVNSIKSIKTVKWDWRNGEVANVVITYRAPTKSLT 183

Query: 290 VAPSVRSGSTS 322
           V+ S  S  TS
Sbjct: 184 VSLSYPSDQTS 194



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>ONCA_TAETA (P22080) Oncosphere antigen A (Fragment)|
          Length = 318

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 335 IRSSLMWILSGLKVQRCLSSLNCVHHFPKKEP 240
           + S  ++  +GL+ Q  LS+  CVH+ P+K P
Sbjct: 258 LASVQLYTFTGLEPQVSLSASICVHYKPQKSP 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,673,540
Number of Sequences: 219361
Number of extensions: 1091596
Number of successful extensions: 2420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2420
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 1386249648
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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