ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17d02 |
|---|---|
| Clone Library Name | barley_pub |
>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 81.3 bits (199), Expect = 5e-16 Identities = 42/59 (71%), Positives = 42/59 (71%) Frame = +2 Query: 221 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRET 397 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRET Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEATREEGDAAMAGRGNEIDEDLHSRQLAVYGRET 59
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 80.9 bits (198), Expect = 7e-16 Identities = 42/59 (71%), Positives = 42/59 (71%) Frame = +2 Query: 221 MLPRKREIVAGEVEDLQKKXXXXXXXXXXXXXXXXMARRGNEIDEDLHSRQLAVYGRET 397 MLPRKREIVAGEVEDLQKK MA RGNEIDEDLHSRQLAVYGRET Sbjct: 1 MLPRKREIVAGEVEDLQKKTRAGEGEVTREEGDAAMAGRGNEIDEDLHSRQLAVYGRET 59
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 40.0 bits (92), Expect = 0.001 Identities = 18/18 (100%), Positives = 18/18 (100%) Frame = +2 Query: 344 EIDEDLHSRQLAVYGRET 397 EIDEDLHSRQLAVYGRET Sbjct: 45 EIDEDLHSRQLAVYGRET 62
>CP2DQ_RAT (P10634) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26) (P450-DB2)| (P450-CMF2) (Debrisoquine 4-hydroxylase) Length = 500 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/32 (50%), Positives = 19/32 (59%) Frame = -3 Query: 358 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 263 +LVDLV + PG +PLPG G LLQV Sbjct: 21 LLVDLVHRHKFWTAHYPPGPVPLPGLGNLLQV 52
>CP2DP_PIG (O46658) Cytochrome P450 2D25 (EC 1.14.14.-) (CYPIID25) (Vitamin| D(3) 25-hydroxylase) Length = 499 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -3 Query: 358 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 263 +LVDL+ + PG +PLPG G LLQV Sbjct: 20 LLVDLMHRRSRWAPRYPPGPMPLPGLGNLLQV 51
>LEU1_STRCO (O31046) 2-isopropylmalate synthase (EC 2.3.3.13)| (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase) Length = 573 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/46 (28%), Positives = 21/46 (45%) Frame = +3 Query: 12 CNPVLQSHPRNPRRTVPRLLPSPTRQANPRFRGGRTRWI*RGSSRR 149 C V+ ++ P R + LP+ ++ P R W+ R SRR Sbjct: 200 CEAVMDTYQPGPGREIILNLPATVERSTPSTHADRFEWMGRNLSRR 245
>CP2DH_MACFA (Q29488) Cytochrome P450 2D17 (EC 1.14.14.1) (CYPIID17)| Length = 497 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -3 Query: 373 LATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 263 +A +LVDL+ + PG LPLPG G LL V Sbjct: 13 VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_HUMAN (P10635) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6) (P450-DB1)| (Debrisoquine 4-hydroxylase) Length = 497 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/37 (43%), Positives = 20/37 (54%) Frame = -3 Query: 373 LATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 263 +A +LVDL+ + PG LPLPG G LL V Sbjct: 13 VAIFLLLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)| Length = 1388 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 87 VASGKEAGEGRSV*GFWDGTGGPD 16 V +GK G+G++V GF DGT D Sbjct: 1361 VVNGKGKGKGKAVAGFQDGTASDD 1384
>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1| Length = 1058 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%) Frame = +2 Query: 326 MARRGNE--IDEDLHSRQLAVYGRE 394 MA+ G+E IDE L+SRQL V G E Sbjct: 41 MAKNGSEADIDESLYSRQLYVLGHE 65
>CP2D6_PANTR (Q2XNC8) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -3 Query: 358 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 263 +LVDL+ + PG LPLPG G LL V Sbjct: 18 LLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2D6_PANPA (Q2XNC9) Cytochrome P450 2D6 (EC 1.14.14.1) (CYPIID6)| Length = 497 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -3 Query: 358 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 263 +LVDL+ + PG LPLPG G LL V Sbjct: 18 LLVDLMHRRQRWAARYPPGPLPLPGLGNLLHV 49
>CP2DQ_MOUSE (Q8CIM7) Cytochrome P450 2D26 (EC 1.14.14.1) (CYPIID26)| Length = 500 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -3 Query: 358 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 263 +LVDLV + PG +P PG G LLQV Sbjct: 21 LLVDLVHRRQRWTACYPPGPVPFPGLGNLLQV 52
>CP2DG_CAVPO (Q64403) Cytochrome P450 2D16 (EC 1.14.14.1) (CYPIID16)| Length = 500 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -3 Query: 373 LATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 263 +A +LVDL+ + PG +P+PG G LLQV Sbjct: 16 VAIFLLLVDLMHRRQRWAARYPPGPVPVPGLGNLLQV 52
>SURE_HALSA (Q9HQB2) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 258 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +2 Query: 62 SPASFPDATGESKVSRRSHALDLT 133 +P DATGE V+R SHA D+T Sbjct: 172 APHPDADATGEMVVTRPSHAYDMT 195
>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1| Length = 1058 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%) Frame = +2 Query: 326 MARRGNE--IDEDLHSRQLAVYGRE 394 MA+ G+E IDE L+SRQL V G E Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHE 65
>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)| Length = 1058 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 2/25 (8%) Frame = +2 Query: 326 MARRGNE--IDEDLHSRQLAVYGRE 394 MA+ G+E IDE L+SRQL V G E Sbjct: 41 MAKNGSEADIDEGLYSRQLYVLGHE 65
>CP2DJ_CALJA (O18992) Cytochrome P450 2D19 (EC 1.14.14.1) (CYPIID19) (P450| CM2D-1) Length = 497 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 373 LATVQVLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 263 +A +LVDL+ + PG +PLPG G LL V Sbjct: 13 VAIFVLLVDLMHRRQRWAARYPPGPMPLPGLGNLLHV 49
>PKNA_MYCTU (P65726) Probable serine/threonine-protein kinase pknA (EC| 2.7.11.1) Length = 431 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%) Frame = +2 Query: 23 PPVPSQKP*TDRPSPASFPDAT---------GESKVSRRS 115 PP PSQ P R +PA+ P T G + SRRS Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319
>PKNA_MYCBO (P65727) Probable serine/threonine-protein kinase pknA (EC| 2.7.11.1) Length = 431 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 9/40 (22%) Frame = +2 Query: 23 PPVPSQKP*TDRPSPASFPDAT---------GESKVSRRS 115 PP PSQ P R +PA+ P T G + SRRS Sbjct: 280 PPRPSQTPPPGRAAPAAIPSGTTARVAANSAGRTAASRRS 319
>CP2DR_MESAU (Q9QYG6) Cytochrome P450 2D27 (EC 1.14.14.-) (CYPIID27)| Length = 500 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -3 Query: 358 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 263 +LVDL+ + PG +PLPG G LLQV Sbjct: 21 LLVDLMHRRKFWRARYPPGPMPLPGLGNLLQV 52
>CP2DK_MESAU (Q9QYG5) Cytochrome P450 2D20 (EC 1.14.14.-) (CYPIID20)| Length = 500 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -3 Query: 358 VLVDLVPPPCHGCVSFLPGRLPLPGAGFLLQV 263 +LVDL+ + PG +PLPG G LLQV Sbjct: 21 LLVDLMHRRKFWRARYPPGPMPLPGLGNLLQV 52
>RS5_RHOS4 (Q3J5Q5) 30S ribosomal protein S5| Length = 187 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = -3 Query: 214 RDAAEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLGFACRVGEGSRRGTVRLG 44 R+ + D R R E D + R + V+ + GFA V G +RG V G Sbjct: 4 RENRRDRRDDRSREETPEFADRLVAINRVSKTVKGGKRFGFAALVVVGDQRGRVGFG 60
>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport| protein 3) Length = 1012 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = -1 Query: 102 TLDSPVASGKEAGEGRSV*GFWDGTGGPDCKISQ 1 T P+AS K G+ + WD PDC + + Sbjct: 896 TFSDPIASPKMKVNGKEIDKIWDRYNLPDCTLQE 929 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.138 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,351,924 Number of Sequences: 219361 Number of extensions: 766290 Number of successful extensions: 2884 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2727 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2883 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
