>LGT_STRAW (Q82A79) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
          Length = 340

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +3

Query: 213 TKSKNGCLKILCGGAGSDATTGSDPETDAHADESKAISDKXXXXXXXXXXXXXV--LKNS 386
           ++ + G  +I+  GA SD  TG+D   D   DE KA +DK                 KN 
Sbjct: 258 SRKRPGREEIVEPGA-SDTGTGADDPVDLGKDEDKATTDKATATDTSTTTDKSTDRGKNE 316

Query: 387 DISEPETLSSSKAKADVAPS 446
           D +E E    S+     A S
Sbjct: 317 DENEGEDAEPSEKTESAAES 336

>PAX8_RAT (P51974) Paired box protein Pax-8|
          Length = 458

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 277 PVVASDPAPPQRILRQPFLDLVMVGSGGSLAPHLP 173
           P ++S  + P  +    FLDL  VGSGG     +P
Sbjct: 314 PELSSSSSTPSSLSSSAFLDLQQVGSGGPAGASVP 348


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,569,883
Number of Sequences: 219361
Number of extensions: 506221
Number of successful extensions: 1781
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1780
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)