ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17c12 |
|---|---|
| Clone Library Name | barley_pub |
>CD48A_ARATH (P54609) Cell division control protein 48 homolog A (AtCDC48a)| Length = 809 Score = 142 bits (357), Expect = 2e-34 Identities = 65/82 (79%), Positives = 77/82 (93%) Frame = +1 Query: 154 PSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLL 333 P+ S+D K+KKD+STAILERKKSPNRLVVDEA NDDNSVV+LHP TME+LQLFRGDT+L+ Sbjct: 4 PAESSDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILI 63 Query: 334 KGKKRKDTICIVLADDTCDEPR 399 KGKKRKDT+CI LAD+TC+EP+ Sbjct: 64 KGKKRKDTVCIALADETCEEPK 85
>CD48E_ARATH (Q9LZF6) Cell division control protein 48 homolog E (AtCDC48e)| (Transitional endoplasmic reticulum ATPase E) Length = 810 Score = 140 bits (352), Expect = 9e-34 Identities = 67/83 (80%), Positives = 76/83 (91%) Frame = +1 Query: 151 EPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 330 EP SS D K KKD+STAILERKKSPNRLVVDEA NDDNSVV+LHP TME+LQLFRGDT+L Sbjct: 4 EPESS-DSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTIL 62 Query: 331 LKGKKRKDTICIVLADDTCDEPR 399 +KGKKRKDT+CI LAD+TC+EP+ Sbjct: 63 IKGKKRKDTVCIALADETCEEPK 85
>CDC48_SOYBN (P54774) Cell division cycle protein 48 homolog (Valosin-containing| protein homolog) (VCP) Length = 807 Score = 138 bits (348), Expect = 3e-33 Identities = 68/87 (78%), Positives = 78/87 (89%), Gaps = 1/87 (1%) Frame = +1 Query: 142 QQGEPSSSADPKA-KKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRG 318 QQGE S+DPK+ KKD+STAILERKKSPNRLVVDEA NDDNSVV +HP TME+LQLFRG Sbjct: 3 QQGE---SSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRG 59 Query: 319 DTVLLKGKKRKDTICIVLADDTCDEPR 399 DT+L+KGKKRKDTICI LAD+ C+EP+ Sbjct: 60 DTILIKGKKRKDTICIALADENCEEPK 86
>CD48D_ARATH (Q9SCN8) Putative cell division control protein 48 homolog D| (AtCDC48d) (Transitional endoplasmic reticulum ATPase D) Length = 815 Score = 133 bits (335), Expect = 9e-32 Identities = 63/82 (76%), Positives = 75/82 (91%), Gaps = 1/82 (1%) Frame = +1 Query: 157 SSSADPKA-KKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLL 333 + S+D K KKD+STAILE+KK+ NRLVVDEA NDDNSVV+LHPDTME+LQLFRGDT+L+ Sbjct: 5 AESSDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILI 64 Query: 334 KGKKRKDTICIVLADDTCDEPR 399 KGKKRKDT+CI LAD+TCDEP+ Sbjct: 65 KGKKRKDTVCIALADETCDEPK 86
>CDC48_CAPAN (Q96372) Cell division cycle protein 48 homolog| Length = 805 Score = 131 bits (330), Expect = 3e-31 Identities = 63/83 (75%), Positives = 72/83 (86%) Frame = +1 Query: 151 EPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 330 + SS AKKD+STAILERKK+ NRLVVDEA NDDNSVVALHP TME+LQLFRGDT+L Sbjct: 4 QAESSDSKNAKKDFSTAILERKKAANRLVVDEAVNDDNSVVALHPATMEKLQLFRGDTIL 63 Query: 331 LKGKKRKDTICIVLADDTCDEPR 399 +KGKKRKDT+ I LAD+TCDEP+ Sbjct: 64 IKGKKRKDTVVIALADETCDEPK 86
>TERA_RAT (P46462) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 103 bits (258), Expect = 8e-23 Identities = 51/81 (62%), Positives = 64/81 (79%) Frame = +1 Query: 157 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 336 +S AD K D STAIL++K PNRL+VDEA N+DNSVV+L M+ LQLFRGDTVLLK Sbjct: 1 ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59 Query: 337 GKKRKDTICIVLADDTCDEPR 399 GKKR++ +CIVL+DDTC + + Sbjct: 60 GKKRREAVCIVLSDDTCSDEK 80
>TERA_PIG (P03974) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 103 bits (258), Expect = 8e-23 Identities = 51/81 (62%), Positives = 64/81 (79%) Frame = +1 Query: 157 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 336 +S AD K D STAIL++K PNRL+VDEA N+DNSVV+L M+ LQLFRGDTVLLK Sbjct: 1 ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59 Query: 337 GKKRKDTICIVLADDTCDEPR 399 GKKR++ +CIVL+DDTC + + Sbjct: 60 GKKRREAVCIVLSDDTCSDEK 80
>TERA_MOUSE (Q01853) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 103 bits (258), Expect = 8e-23 Identities = 51/81 (62%), Positives = 64/81 (79%) Frame = +1 Query: 157 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 336 +S AD K D STAIL++K PNRL+VDEA N+DNSVV+L M+ LQLFRGDTVLLK Sbjct: 1 ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59 Query: 337 GKKRKDTICIVLADDTCDEPR 399 GKKR++ +CIVL+DDTC + + Sbjct: 60 GKKRREAVCIVLSDDTCSDEK 80
>TERA_HUMAN (P55072) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) (Valosin-containing protein) (VCP) Length = 805 Score = 103 bits (258), Expect = 8e-23 Identities = 51/81 (62%), Positives = 64/81 (79%) Frame = +1 Query: 157 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 336 +S AD K D STAIL++K PNRL+VDEA N+DNSVV+L M+ LQLFRGDTVLLK Sbjct: 1 ASGADSKGD-DLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLK 59 Query: 337 GKKRKDTICIVLADDTCDEPR 399 GKKR++ +CIVL+DDTC + + Sbjct: 60 GKKRREAVCIVLSDDTCSDEK 80
>TERA_XENLA (P23787) Transitional endoplasmic reticulum ATPase (TER ATPase)| (15S Mg(2+)-ATPase p97 subunit) Length = 805 Score = 101 bits (252), Expect = 4e-22 Identities = 49/81 (60%), Positives = 65/81 (80%) Frame = +1 Query: 157 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 336 +S +D K+ D STAIL++K PNRL+VDE+ N+DNSVV+L M+ LQLFRGDTVLLK Sbjct: 2 ASGSDTKSD-DLSTAILKQKSRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLLK 60 Query: 337 GKKRKDTICIVLADDTCDEPR 399 GKKR++ +CIVL+DDTC + + Sbjct: 61 GKKRREAVCIVLSDDTCSDEK 81
>CDC48_YEAST (P25694) Cell division control protein 48| Length = 835 Score = 99.0 bits (245), Expect = 2e-21 Identities = 46/79 (58%), Positives = 63/79 (79%) Frame = +1 Query: 157 SSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLK 336 +S DP+ + +TAIL RKK N L+VD+A NDDNSV+A++ +TM++L+LFRGDTVL+K Sbjct: 11 ASGVDPREEDKTATAILRRKKKDNMLLVDDAINDDNSVIAINSNTMDKLELFRGDTVLVK 70 Query: 337 GKKRKDTICIVLADDTCDE 393 GKKRKDT+ IVL DD ++ Sbjct: 71 GKKRKDTVLIVLIDDELED 89
>CDC48_SCHPO (Q9P3A7) Cell division cycle protein 48| Length = 815 Score = 97.1 bits (240), Expect = 9e-21 Identities = 48/83 (57%), Positives = 64/83 (77%) Frame = +1 Query: 145 QGEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDT 324 QGE + D + +D +TAIL +K+ PN LVVD+ATNDDNSV+ L +TME LQLFRGDT Sbjct: 18 QGE-NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDT 76 Query: 325 VLLKGKKRKDTICIVLADDTCDE 393 V++KGK+RKDT+ IVL D+ ++ Sbjct: 77 VVVKGKRRKDTVLIVLTDEEMED 99
>TERA2_CAEEL (P54812) Transitional endoplasmic reticulum ATPase homolog 2| (p97/CDC48 homolog 2) Length = 810 Score = 84.3 bits (207), Expect = 6e-17 Identities = 42/75 (56%), Positives = 56/75 (74%), Gaps = 2/75 (2%) Frame = +1 Query: 169 DPKAKK--DYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGK 342 D K KK + +TAIL+ KK PNRL++D++ NDDNS+V L M+ L LFRGD+V+LKGK Sbjct: 9 DEKEKKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGK 68 Query: 343 KRKDTICIVLADDTC 387 KR++T+ IVL D C Sbjct: 69 KRRETVSIVLNADNC 83
>TERA1_CAEEL (P54811) Transitional endoplasmic reticulum ATPase homolog 1| (p97/CDC48 homolog 1) Length = 809 Score = 84.0 bits (206), Expect = 8e-17 Identities = 39/79 (49%), Positives = 59/79 (74%), Gaps = 1/79 (1%) Frame = +1 Query: 154 PSSSADPKAKKD-YSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 330 P+ ++ + K D STAIL+ K PNRL+VD++ DDNSV+A+ M+ L LFRGD V+ Sbjct: 5 PTHQSEKEKKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVI 64 Query: 331 LKGKKRKDTICIVLADDTC 387 LKGKKRK+++ I+++D++C Sbjct: 65 LKGKKRKESVAIIVSDESC 83
>CDAT_PLAF7 (P46468) Putative cell division cycle ATPase| Length = 1229 Score = 33.5 bits (75), Expect = 0.12 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Frame = +1 Query: 205 LERKKSPNRLVVDEAT-NDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLAD 378 L+ K P +V+ N DN + + + M+ L + G TVLLKGKK+++ + I D Sbjct: 333 LDSGKFPTYCLVENIDENLDNFDIYMSKEKMDELNINDGATVLLKGKKKREMLGIARLD 391
>BBM1_BRANA (Q8L3U3) Protein BABY BOOM 1 (BnBBM1)| Length = 579 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/33 (48%), Positives = 19/33 (57%) Frame = +1 Query: 169 DPKAKKDYSTAILERKKSPNRLVVDEATNDDNS 267 DP A D S+AI SP +VVD T D+NS Sbjct: 40 DPTAASDESSAIQTSFPSPFGVVVDAFTRDNNS 72
>MBP1_YEAST (P39678) Transcription factor MBP1 (MBF subunit p120)| Length = 833 Score = 28.9 bits (63), Expect = 3.1 Identities = 19/59 (32%), Positives = 30/59 (50%) Frame = +1 Query: 175 KAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRK 351 K K +Y +L N+L+ DE N+ V +T+ERL+L + T+L +K K Sbjct: 714 KQKLEYRQTVLL-----NKLIEDETQATTNNTVEKDNNTLERLELAQELTMLQLQRKNK 767
>POLG_TEV (P04517) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral geno Length = 3054 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = +1 Query: 148 GEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFR 315 G+PS+ D + K N+ + N D+ ++A+HPD ERL F+ Sbjct: 2590 GQPSTVVDNTLMVIIAMLYTCEKCGINKEEIVYYVNGDDLLIAIHPDKAERLSRFK 2645
>BBM2_BRANA (Q8LSN2) Protein BABY BOOM 2 (BnBBM2)| Length = 579 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 169 DPKAKKDYSTAILERKKSPNRLVVDEATNDDNS 267 DP A D S+AI SP +V+D T D+NS Sbjct: 40 DPTAASDESSAIQTSFPSPFGVVLDAFTRDNNS 72
>ACDD_METJA (Q57577) Acetyl-CoA decarbonylase/synthase complex delta subunit| (ACDS complex delta subunit) (Corrinoid/iron-sulfur component small subunit) Length = 405 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = +1 Query: 160 SSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQL--FRGDTVL 330 S DP +D + ++E PNR+V+D T + + M RL+L +GD ++ Sbjct: 259 SIMDPNMARDLNRKLVEAGLDPNRIVMDPTTCALGYGIEFSINAMVRLRLNGLKGDELV 317
>HSLU_COXBU (Q83A94) ATP-dependent hsl protease ATP-binding subunit hslU| Length = 447 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +1 Query: 145 QGEPSSSADPKAKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHP 285 QGEP++ P KK+ +T L RKK N + D+ + V+ HP Sbjct: 143 QGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEVE---VSAHP 186
>Y700_VIBVU (Q8DE96) UPF0307 protein VV1_0700| Length = 185 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +1 Query: 151 EPSSSADPKAKKDYS--TAILERKKSPNRLVVDEATNDDNSVVALHPD 288 EP +A K + +S TA+L + ++ +V++ + + VVAL+PD Sbjct: 87 EPIQAALDKIRNKHSQNTAVLHKLETLRERIVEQGDSAIDDVVALYPD 134
>Y440_VIBVY (Q7MPC4) UPF0307 protein VV0440| Length = 185 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +1 Query: 151 EPSSSADPKAKKDYS--TAILERKKSPNRLVVDEATNDDNSVVALHPD 288 EP +A K + +S TA+L + ++ +V++ + + VVAL+PD Sbjct: 87 EPIQAALDKIRNKHSQNTAVLHKLETLRERIVEQGDSAIDDVVALYPD 134 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.130 0.361 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,278,790 Number of Sequences: 219361 Number of extensions: 443114 Number of successful extensions: 1311 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1299 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1311 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
