>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 35.4 bits (80), Expect = 0.038
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 7/34 (20%)
 Frame = +2

Query: 14  PPRRDRSPVLPPR-------PHSRAPDPRTLTPP 94
           PPRR RSP  PPR       P  R+P PR  +PP
Sbjct: 585 PPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPP 618



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 5   LARPPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLAR 115
           + +  RR RSP  PP    R+P P    PP   P  R
Sbjct: 552 VTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPPRR 588

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 35.0 bits (79), Expect = 0.050
 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = +2

Query: 14  PPRRDRSPVLP------PRPHSRAPDPRTLTPP 94
           PPRR RSP LP      P P  R+P PR  +PP
Sbjct: 560 PPRRRRSPSLPRRRSPSPPPRRRSPSPRRYSPP 592

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 35.0 bits (79), Expect = 0.050
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
 Frame = +2

Query: 8   ARPPRRDRSPVLPPR-------PHSRAPDPRTLTPP 94
           A PPRR R+P  PPR       P  R+P PR  +PP
Sbjct: 578 APPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPP 613

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 35.0 bits (79), Expect = 0.050
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 7/36 (19%)
 Frame = +2

Query: 8   ARPPRRDRSPVLPPR-------PHSRAPDPRTLTPP 94
           A PPRR R+P  PPR       P  R+P PR  +PP
Sbjct: 564 APPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPP 599

>ROBO1_MOUSE (O89026) Roundabout homolog 1 precursor|
          Length = 1612

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 5    LARPPRRDRSPVLPPRPHSRAPDPRTLTPPH 97
            +  PP R R PV PP      P PR ++PPH
Sbjct: 1246 MPHPPDRRRQPVSPP------PPPRPISPPH 1270

>ROBO1_RAT (O55005) Roundabout homolog 1 precursor|
          Length = 1651

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 5    LARPPRRDRSPVLPPRPHSRAPDPRTLTPPH 97
            +  PP R R PV PP      P PR ++PPH
Sbjct: 1285 MPHPPDRRRQPVSPP------PPPRPISPPH 1309

>LATS1_MOUSE (Q8BYR2) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large|
           tumor suppressor homolog 1) (WARTS protein kinase)
          Length = 1129

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPP 94
           PP + RS   PP P  + P PR  TPP
Sbjct: 238 PPPQVRSVTPPPPPRGQTPPPRGTTPP 264

>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)|
          Length = 731

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 152 EQETRRHAGERASGLVGWHAGGSGFGDLELASVDGAG 42
           EQE     GER  GL G HAGG+G G      +D +G
Sbjct: 103 EQEFELSEGERVYGL-GQHAGGNGLGQSSAYKLDYSG 138

>LATS1_HUMAN (O95835) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large|
           tumor suppressor homolog 1) (WARTS protein kinase)
           (h-warts)
          Length = 1130

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPP 94
           PP + RS   PP P  + P PR  TPP
Sbjct: 238 PPPQVRSVTPPPPPRGQTPPPRGTTPP 264

>Y4BJ_RHISN (P55377) Hypothetical 67.9 kDa protein y4bJ|
          Length = 630

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -1

Query: 89  GSGFGDLELASVDGAGARENDLDGEG 12
           G+G+  +E A++DG G R  D+DG+G
Sbjct: 226 GNGWTSIEGATLDGGGYRLQDIDGDG 251

>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor|
           (Mu-protocadherin)
          Length = 831

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 17  PRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLA 112
           P+  + P+ PP P S +P P + TPP   P A
Sbjct: 710 PKLAQPPLRPPSPMSSSPTPPSSTPPSPQPKA 741

>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)|
           (Fragment)
          Length = 198

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 8   ARPPRRDRSPVLPPRPHSRAPDPRTLTPPHAIP 106
           A PP   R     P P  R PDP +  PPHA P
Sbjct: 17  ATPPTHAR-----PDPTRRHPDPESRAPPHARP 44

>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor|
           (Hydroxyproline-rich glycoprotein 1)
          Length = 555

 Score = 26.6 bits (57), Expect(2) = 2.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 11  RPPRRDRSPVLPPRPHSRAPDPRTLTPP 94
           RPP    +P +PP P S  P P   TPP
Sbjct: 277 RPPFPANTP-MPPSPPSPPPSPAPPTPP 303



 Score = 21.2 bits (43), Expect(2) = 2.9
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 73  SPNPDPPACHPTSPLARSP 129
           SP P PP+  P SP    P
Sbjct: 317 SPAPVPPSPAPPSPAPSPP 335

>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22|
          Length = 831

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +2

Query: 23 RDRSPVL-PPRPHSRAPDPRTLTP 91
          R RSP L PPRP SR+   R+LTP
Sbjct: 12 RPRSPSLSPPRPDSRSSRGRSLTP 35



 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
 Frame = +2

Query: 14  PPRR------DRSPVLPPRPHSRAPDPRTLTPP 94
           PPRR       RSP  PPR    + +PR+ +PP
Sbjct: 717 PPRRRRYSSDSRSPSPPPRRRQYSDEPRSPSPP 749

>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)|
          Length = 426

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPPHA 100
           PPR  +SP+LPP P    P   T +P  A
Sbjct: 223 PPRAKKSPLLPPPPPVAYPPVMTPSPSPA 251

>ENV2_MOUSE (P11370) Retrovirus-related Env polyprotein from Fv-4 locus|
          Length = 679

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +2

Query: 11  RPPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPL 109
           RPP R   P  PP P +  P    LTPP   PL
Sbjct: 278 RPPSRP-VPARPPPPSNSTPTGDPLTPPTGDPL 309

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDP---RTLTP---PHAIPLAR 115
           PP RD SP   P   + +P P   R+L+P   PH+ P +R
Sbjct: 45  PPSRDPSPYRSPGERTPSPSPRRDRSLSPRDQPHSHPRSR 84

>ZDHC8_MOUSE (Q5Y5T5) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 8) (DHHC-8)
          Length = 762

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 11  RPPRRDRSPVLPPRPHSRAP 70
           RPP R  SPVL PRP   +P
Sbjct: 516 RPPPRSFSPVLGPRPREPSP 535

>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 114

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 61  ASSRSPNPDPPACHPTSPL 117
           +SS SP+P PP  HP +P+
Sbjct: 45  SSSSSPSPGPPTKHPKTPM 63

>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding|
           protein-associated factor 2S) (Transcription factor
           CA150)
          Length = 1098

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPL 109
           PP   R P +PP   S  P P  + PP   P+
Sbjct: 91  PPHLQRPPFMPPPMSSMPPPPGMMFPPGMPPV 122

>ROBO1_HUMAN (Q9Y6N7) Roundabout homolog 1 precursor (H-Robo-1) (Deleted in U|
            twenty twenty)
          Length = 1651

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 17   PRRDRSPVLPPRPHSRAPDPRTLTPPH 97
            P R R PV PP      P PR ++PPH
Sbjct: 1289 PDRRRQPVSPP------PPPRPISPPH 1309

>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing|
            protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1
            ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral
            sclerosis 2 chromosomal region candidate 9 gene protein)
          Length = 1302

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +2

Query: 14   PPRRDRSPVLPPRPHSRAPDPRTLTPPHAIP 106
            PP  + S V PP P S  P P    PP A P
Sbjct: 970  PPPPESSLVFPPPPPSPVPAPPPPPPPTASP 1000

>SMRC2_HUMAN (Q8TAQ2) SWI/SNF-related matrix-associated actin-dependent regulator|
            of chromatin subfamily C member 2 (SWI/SNF complex 170
            kDa subunit) (BRG1-associated factor 170)
          Length = 1214

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 38   VLPPRPHSRAPDPRTLTPPHAIP 106
            V PP PH  +P P   TPP  +P
Sbjct: 1040 VPPPGPHGPSPFPNQQTPPSMMP 1062

>P85B_HUMAN (O00459) Phosphatidylinositol 3-kinase regulatory beta subunit|
           (PI3-kinase p85-beta subunit) (PtdIns-3-kinase p85-beta)
          Length = 728

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 5   LARPPRRDRSP-VLPPRPHSRAPDPRTLTP 91
           LARP  R R P  LP RP   AP+P    P
Sbjct: 83  LARPGPRPRGPRPLPARPRDGAPEPGLTLP 112

>NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)|
          Length = 434

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +2

Query: 14  PPRRDRSPVLPPRPHSRAP--DPRTLTPPHAIP 106
           PP  ++ P++ P PH + P  +P    PP A P
Sbjct: 6   PPPHEKPPIVHPPPHEKPPLFEPPFEKPPPAHP 38

>CUD1_SCHGR (Q7M4F4) Endocuticle structural glycoprotein SgAbd-1|
          Length = 184

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = +2

Query: 11  RPPRRDRSPVLPPRPHSRA----PDPRTLTPPHAIP 106
           R PR   +PV P  P SRA    P PR + P   +P
Sbjct: 17  RIPRPSATPVRPSPPASRAPPPPPPPRPVVPSQPLP 52

>TBX9_CAEEL (Q22289) T-box transcription factor tbx-9|
          Length = 292

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 20  RRDRSPVLPPRPHSRAPDPRTLTPPHAIPL 109
           R+ RSP      +S++P P++ +PP   PL
Sbjct: 199 RKRRSPSYSDGSNSQSPSPKSRSPPEVAPL 228

>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1839

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 79  NPDPPACHPTSPLARSP 129
           NP PP+ HP +PLA  P
Sbjct: 717 NPTPPSSHPFTPLADDP 733


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.125    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,633,545
Number of Sequences: 219361
Number of extensions: 402720
Number of successful extensions: 2821
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2776
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)