ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl17c09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467429.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3201 Score = 85.7 bits (43), Expect = 7e-14 Identities = 55/59 (93%) Strand = Plus / Plus Query: 198 gcggtggcgagcatcgacctgggctccgagtggctcaaggtcgcggccgtgcacctcgc 256 ||||||||||||||||||||||| || |||||||||||||| || |||||||||||||| Sbjct: 235 gcggtggcgagcatcgacctggggtcggagtggctcaaggtggccgccgtgcacctcgc 293
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 85.7 bits (43), Expect = 7e-14 Identities = 55/59 (93%) Strand = Plus / Plus Query: 198 gcggtggcgagcatcgacctgggctccgagtggctcaaggtcgcggccgtgcacctcgc 256 ||||||||||||||||||||||| || |||||||||||||| || |||||||||||||| Sbjct: 29470665 gcggtggcgagcatcgacctggggtcggagtggctcaaggtggccgccgtgcacctcgc 29470723 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Plus Query: 14 cctccccgtcgagatcgttctccc 37 |||||||||||||||||||||||| Sbjct: 29470425 cctccccgtcgagatcgttctccc 29470448
>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1038_A06 Length = 147836 Score = 85.7 bits (43), Expect = 7e-14 Identities = 55/59 (93%) Strand = Plus / Plus Query: 198 gcggtggcgagcatcgacctgggctccgagtggctcaaggtcgcggccgtgcacctcgc 256 ||||||||||||||||||||||| || |||||||||||||| || |||||||||||||| Sbjct: 65695 gcggtggcgagcatcgacctggggtcggagtggctcaaggtggccgccgtgcacctcgc 65753 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Plus Query: 14 cctccccgtcgagatcgttctccc 37 |||||||||||||||||||||||| Sbjct: 65455 cctccccgtcgagatcgttctccc 65478
>dbj|AP004161.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1311_H06 Length = 139868 Score = 85.7 bits (43), Expect = 7e-14 Identities = 55/59 (93%) Strand = Plus / Plus Query: 198 gcggtggcgagcatcgacctgggctccgagtggctcaaggtcgcggccgtgcacctcgc 256 ||||||||||||||||||||||| || |||||||||||||| || |||||||||||||| Sbjct: 121537 gcggtggcgagcatcgacctggggtcggagtggctcaaggtggccgccgtgcacctcgc 121595 Score = 48.1 bits (24), Expect = 0.014 Identities = 24/24 (100%) Strand = Plus / Plus Query: 14 cctccccgtcgagatcgttctccc 37 |||||||||||||||||||||||| Sbjct: 121297 cctccccgtcgagatcgttctccc 121320
>dbj|AK100997.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146N12, full insert sequence Length = 3201 Score = 85.7 bits (43), Expect = 7e-14 Identities = 55/59 (93%) Strand = Plus / Plus Query: 198 gcggtggcgagcatcgacctgggctccgagtggctcaaggtcgcggccgtgcacctcgc 256 ||||||||||||||||||||||| || |||||||||||||| || |||||||||||||| Sbjct: 235 gcggtggcgagcatcgacctggggtcggagtggctcaaggtggccgccgtgcacctcgc 293
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 155 cgccctcgtcgcggcggccgtggccg 180 |||||||||||||||||||||||||| Sbjct: 23156 cgccctcgtcgcggcggccgtggccg 23131
>gb|AE004715.1| Pseudomonas aeruginosa PAO1, section 276 of 529 of the complete genome Length = 10189 Score = 46.1 bits (23), Expect = 0.056 Identities = 29/31 (93%) Strand = Plus / Minus Query: 170 ggccgtggccgtgccgccggcgagcgccgcg 200 |||| |||||| ||||||||||||||||||| Sbjct: 8570 ggccatggccgcgccgccggcgagcgccgcg 8540
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 46.1 bits (23), Expect = 0.056 Identities = 32/35 (91%) Strand = Plus / Plus Query: 164 cgcggcggccgtggccgtgccgccggcgagcgccg 198 |||||||||||||||| |||||| ||| ||||||| Sbjct: 1961565 cgcggcggccgtggccctgccgctggccagcgccg 1961599
>ref|NM_188531.1| Oryza sativa (japonica cultivar-group), Ozsa8200 predicted mRNA Length = 1122 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 cgcggcggccgtggccgtgccgccgg 189 ||||||||| |||||||||||||||| Sbjct: 270 cgcggcggcggtggccgtgccgccgg 295
>ref|XM_472588.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1281 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 157 ccctcgtcgcggcggccgtggc 178 |||||||||||||||||||||| Sbjct: 712 ccctcgtcgcggcggccgtggc 691
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 157 ccctcgtcgcggcggccgtggc 178 |||||||||||||||||||||| Sbjct: 21755213 ccctcgtcgcggcggccgtggc 21755192
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 cgcggcggccgtggccgtgccgccgg 189 ||||||||| |||||||||||||||| Sbjct: 6813360 cgcggcggcggtggccgtgccgccgg 6813385 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 tcctcgccctcgtcgcggcggccgt 175 |||||||||||| |||||||||||| Sbjct: 19055464 tcctcgccctcgccgcggcggccgt 19055488
>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E05 Length = 176935 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 cgcggcggccgtggccgtgccgccgg 189 ||||||||| |||||||||||||||| Sbjct: 165512 cgcggcggcggtggccgtgccgccgg 165537
>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0417G05 Length = 147803 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 cgcggcggccgtggccgtgccgccgg 189 ||||||||| |||||||||||||||| Sbjct: 95421 cgcggcggcggtggccgtgccgccgg 95446
>dbj|AK121647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058N21, full insert sequence Length = 1800 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 157 ccctcgtcgcggcggccgtggc 178 |||||||||||||||||||||| Sbjct: 1112 ccctcgtcgcggcggccgtggc 1091
>dbj|AK106517.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B02, full insert sequence Length = 1817 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 cgcggcggccgtggccgtgccgccgg 189 ||||||||| |||||||||||||||| Sbjct: 642 cgcggcggcggtggccgtgccgccgg 667
>dbj|AK101054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033015K21, full insert sequence Length = 1560 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 164 cgcggcggccgtggccgtgccgccgg 189 ||||||||| |||||||||||||||| Sbjct: 408 cgcggcggcggtggccgtgccgccgg 433
>emb|AL606592.2|OSJN00024 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006B20, complete sequence Length = 141915 Score = 44.1 bits (22), Expect = 0.22 Identities = 22/22 (100%) Strand = Plus / Minus Query: 157 ccctcgtcgcggcggccgtggc 178 |||||||||||||||||||||| Sbjct: 66830 ccctcgtcgcggcggccgtggc 66809
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 gcggccgtggccgtgccgccg 188 ||||||||||||||||||||| Sbjct: 569278 gcggccgtggccgtgccgccg 569298
>ref|NM_193176.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1437 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 tcctcgccctcgtcgcggcggccgt 175 |||||||||||| |||||||||||| Sbjct: 44 tcctcgccctcgccgcggcggccgt 68
>gb|AE017356.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 14, complete sequence Length = 762694 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 gtggcgagcatcgacctgggc 221 ||||||||||||||||||||| Sbjct: 551153 gtggcgagcatcgacctgggc 551173
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 168 gcggccgtggccgtgccgccg 188 ||||||||||||||||||||| Sbjct: 569094 gcggccgtggccgtgccgccg 569114
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 tgccgccggcgagcgccgcgg 201 ||||||||||||||||||||| Sbjct: 479867 tgccgccggcgagcgccgcgg 479847
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Minus Query: 181 tgccgccggcgagcgccgcgg 201 ||||||||||||||||||||| Sbjct: 1799257 tgccgccggcgagcgccgcgg 1799237
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Plus Query: 185 gccggcgagcgccgcggtggcgagc 209 |||||||||||||||| |||||||| Sbjct: 557157 gccggcgagcgccgcgatggcgagc 557181
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 tgccgccggcgagcgccgcgg 201 ||||||||||||||||||||| Sbjct: 984780 tgccgccggcgagcgccgcgg 984800
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 ctcctgctcctcgccctcgtc 164 ||||||||||||||||||||| Sbjct: 26574931 ctcctgctcctcgccctcgtc 26574911 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 gcggcggccgtggccgtgccgccg 188 |||||||||| ||||||||||||| Sbjct: 6965044 gcggcggccggggccgtgccgccg 6965021
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 tcgccctcgtcgcggcggccgtggc 178 |||||||||||||||||||| |||| Sbjct: 565159 tcgccctcgtcgcggcggccctggc 565183
>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0702H08 Length = 166899 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 tcctcgccctcgtcgcggcggccgt 175 |||||||||||| |||||||||||| Sbjct: 20881 tcctcgccctcgccgcggcggccgt 20905
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 cgccctcgtcgcggcggccgt 175 ||||||||||||||||||||| Sbjct: 3862737 cgccctcgtcgcggcggccgt 3862717 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 tgccgccggcgagcgccgcg 200 |||||||||||||||||||| Sbjct: 8742906 tgccgccggcgagcgccgcg 8742887 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cggcgagcgccgcggtggcg 206 |||||||||||||||||||| Sbjct: 2682573 cggcgagcgccgcggtggcg 2682554
>dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0460H04 Length = 166490 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 ctcctgctcctcgccctcgtc 164 ||||||||||||||||||||| Sbjct: 108584 ctcctgctcctcgccctcgtc 108564
>dbj|AK109762.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-G11, full insert sequence Length = 1040 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 ctcctgctcctcgccctcgtc 164 ||||||||||||||||||||| Sbjct: 39 ctcctgctcctcgccctcgtc 59
>dbj|AK101002.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147G07, full insert sequence Length = 1933 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Plus Query: 151 tcctcgccctcgtcgcggcggccgt 175 |||||||||||| |||||||||||| Sbjct: 120 tcctcgccctcgccgcggcggccgt 144
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Minus Query: 177 gccgtgccgccggcgagcgccgcgg 201 ||||||||||| ||||||||||||| Sbjct: 3699970 gccgtgccgcccgcgagcgccgcgg 3699946 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 tcgtcgcggcggccgtggcc 179 |||||||||||||||||||| Sbjct: 3358835 tcgtcgcggcggccgtggcc 3358854
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cctcgccctcgtcgcggcgg 171 |||||||||||||||||||| Sbjct: 2226303 cctcgccctcgtcgcggcgg 2226322
>ref|XM_481192.1| Oryza sativa (japonica cultivar-group), mRNA Length = 582 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tcgcggcggccgtggccgtg 182 |||||||||||||||||||| Sbjct: 44 tcgcggcggccgtggccgtg 63
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cggcgagcgccgcggtggcg 206 |||||||||||||||||||| Sbjct: 3241233 cggcgagcgccgcggtggcg 3241214 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 179 cgtgccgccggcgagcgccgcggtggcg 206 |||||||| |||| |||||||||||||| Sbjct: 28102 cgtgccgctggcgggcgccgcggtggcg 28129
>ref|XM_479336.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1614 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 164 cgcggcggccgtggccgtgccgccggcg 191 ||||||||||||||||||| || ||||| Sbjct: 39 cgcggcggccgtggccgtggcggcggcg 66
>ref|NM_145952.2| Mus musculus TBC1D12: TBC1 domain family, member 12 (Tbc1d12), mRNA Length = 3961 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 cgtcgcggcggccgtggccg 180 |||||||||||||||||||| Sbjct: 69 cgtcgcggcggccgtggccg 88
>ref|NM_177454.2| Homo sapiens KIAA1946 (KIAA1946), mRNA Length = 3575 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcccgctcgctcgctccccc 129 |||||||||||||||||||| Sbjct: 31 gcccgctcgctcgctccccc 12
>gb|AC101775.10| Mus musculus chromosome 19, clone RP24-116B5, complete sequence Length = 167945 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 cgtcgcggcggccgtggccg 180 |||||||||||||||||||| Sbjct: 30055 cgtcgcggcggccgtggccg 30074
>ref|XM_001000978.1| PREDICTED: Mus musculus RIKEN cDNA D430039N05 gene (D430039N05Rik), mRNA Length = 5757 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcccgctcgctcgctccccc 129 |||||||||||||||||||| Sbjct: 250 gcccgctcgctcgctccccc 231
>ref|XM_922613.2| PREDICTED: Mus musculus similar to KIAA1946, transcript variant 2 (LOC634842), mRNA Length = 5674 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcccgctcgctcgctccccc 129 |||||||||||||||||||| Sbjct: 298 gcccgctcgctcgctccccc 279
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 cggcgagcgccgcggtggcg 206 |||||||||||||||||||| Sbjct: 2178243 cggcgagcgccgcggtggcg 2178224
>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12 Length = 300000 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gccgccggcgagcgccgcgg 201 |||||||||||||||||||| Sbjct: 266584 gccgccggcgagcgccgcgg 266565
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 cgcggcggccgtggccgtgc 183 |||||||||||||||||||| Sbjct: 724679 cgcggcggccgtggccgtgc 724660
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 cggcgagcgccgcggtggcgagca 210 ||||||||| |||||||||||||| Sbjct: 823583 cggcgagcggcgcggtggcgagca 823560
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 3.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 169 cggccgtggccgtgccgccggcgagcgccgcg 200 ||||||||||||||| || |||| |||||||| Sbjct: 90969 cggccgtggccgtgctgcaggcgcgcgccgcg 91000
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 3.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 169 cggccgtggccgtgccgccggcgagcgccgcg 200 ||||||||||||||| || |||| |||||||| Sbjct: 204004 cggccgtggccgtgctgcaggcgcgcgccgcg 204035
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 40.1 bits (20), Expect = 3.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 169 cggccgtggccgtgccgccggcgagcgccgcg 200 ||||||||||||||| || |||| |||||||| Sbjct: 4535 cggccgtggccgtgctgcaggcgcgcgccgcg 4566
>gb|BC060872.1| Homo sapiens KIAA1946, mRNA (cDNA clone MGC:71825 IMAGE:30347998), complete cds Length = 3575 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcccgctcgctcgctccccc 129 |||||||||||||||||||| Sbjct: 31 gcccgctcgctcgctccccc 12
>gb|AE005848.1| Caulobacter crescentus CB15 section 174 of 359 of the complete genome Length = 12510 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 gccctcgtcgcggcggccgt 175 |||||||||||||||||||| Sbjct: 432 gccctcgtcgcggcggccgt 451
>dbj|AK091423.1| Homo sapiens cDNA FLJ34104 fis, clone FCBBF3007860 Length = 3283 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcccgctcgctcgctccccc 129 |||||||||||||||||||| Sbjct: 31 gcccgctcgctcgctccccc 12
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 cctgctcctcgccctcgtcg 165 |||||||||||||||||||| Sbjct: 1010309 cctgctcctcgccctcgtcg 1010290
>dbj|AK038899.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched library, clone:A230073I09 product:NPD019 homolog [Homo sapiens], full insert sequence Length = 945 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcccgctcgctcgctccccc 129 |||||||||||||||||||| Sbjct: 34 gcccgctcgctcgctccccc 15
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tcgcggcggccgtggccgtg 182 |||||||||||||||||||| Sbjct: 10501904 tcgcggcggccgtggccgtg 10501923
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 164 cgcggcggccgtggccgtgccgccggcg 191 ||||||||||||||||||| || ||||| Sbjct: 26969900 cgcggcggccgtggccgtggcggcggcg 26969873
>gb|AC023162.41| Homo sapiens 3 BAC RP11-263I1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 95579 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tctcccgtgctcccgccccg 51 |||||||||||||||||||| Sbjct: 33521 tctcccgtgctcccgccccg 33502
>gb|AC017101.10| Homo sapiens BAC clone RP11-556A11 from 2, complete sequence Length = 195635 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcccgctcgctcgctccccc 129 |||||||||||||||||||| Sbjct: 113070 gcccgctcgctcgctccccc 113051
>dbj|AK172979.1| Mus musculus mRNA for mKIAA0608 protein Length = 3947 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 161 cgtcgcggcggccgtggccg 180 |||||||||||||||||||| Sbjct: 69 cgtcgcggcggccgtggccg 88
>ref|XM_575160.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA D430039N05 gene (LOC499821), mRNA Length = 2649 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcccgctcgctcgctccccc 129 |||||||||||||||||||| Sbjct: 96 gcccgctcgctcgctccccc 77
>dbj|AP003822.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1316_A04 Length = 87144 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 164 cgcggcggccgtggccgtgccgccggcg 191 ||||||||||||||||||| || ||||| Sbjct: 34378 cgcggcggccgtggccgtggcggcggcg 34351
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ccggcgagcgccgcggtggc 205 |||||||||||||||||||| Sbjct: 481743 ccggcgagcgccgcggtggc 481724
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 gcggcggccgtggccgtgccgccg 188 ||||| |||||||||||||||||| Sbjct: 1803008 gcggccgccgtggccgtgccgccg 1802985
>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0061B07 Length = 124766 Score = 40.1 bits (20), Expect = 3.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 165 gcggcggccgtggccgtgccgccg 188 |||||||||| ||||||||||||| Sbjct: 24471 gcggcggccggggccgtgccgccg 24448
>dbj|AP005455.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0503D09 Length = 144443 Score = 40.1 bits (20), Expect = 3.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 164 cgcggcggccgtggccgtgccgccggcg 191 ||||||||||||||||||| || ||||| Sbjct: 118491 cgcggcggccgtggccgtggcggcggcg 118464
>gb|AE005029.1| Halobacterium sp. NRC-1 section 60 of 170 of the complete genome Length = 12664 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ccgtggccgtgccgccggcg 191 |||||||||||||||||||| Sbjct: 6265 ccgtggccgtgccgccggcg 6284
>dbj|AP005163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0053M06 Length = 175416 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tcgcggcggccgtggccgtg 182 |||||||||||||||||||| Sbjct: 124495 tcgcggcggccgtggccgtg 124514
>dbj|AP004130.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_B05 Length = 121853 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tcgcggcggccgtggccgtg 182 |||||||||||||||||||| Sbjct: 21372 tcgcggcggccgtggccgtg 21391
>dbj|AK109468.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C06, full insert sequence Length = 1654 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tcgcggcggccgtggccgtg 182 |||||||||||||||||||| Sbjct: 780 tcgcggcggccgtggccgtg 799
>gb|AF043654.1|AF043654 Streptomyces lividans 1326 BxlS (bxlS), BxlR (bxlR), BxlE (bxlE), BxlF (bxlF), BxlG (bxlG), and BxlA (bxlA) genes, complete cds Length = 8616 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cgccggcgagcgccgcggtg 203 |||||||||||||||||||| Sbjct: 7804 cgccggcgagcgccgcggtg 7785
>emb|AL772301.7| Mouse DNA sequence from clone RP23-111F12 on chromosome 2, complete sequence Length = 187665 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 gcccgctcgctcgctccccc 129 |||||||||||||||||||| Sbjct: 165328 gcccgctcgctcgctccccc 165309
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cgccggcgagcgccgcggtg 203 |||||||||||||||||||| Sbjct: 60242 cgccggcgagcgccgcggtg 60223
>emb|AL449213.4|HS344J2 Homo sapiens chromosome 3 sequence from BAC 344J2 map 3q21 region D3S3607-D3S1587, complete sequence Length = 98356 Score = 40.1 bits (20), Expect = 3.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 tctcccgtgctcccgccccg 51 |||||||||||||||||||| Sbjct: 71326 tctcccgtgctcccgccccg 71345 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,343,557 Number of Sequences: 3902068 Number of extensions: 1343557 Number of successful extensions: 39099 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36523 Number of HSP's gapped (non-prelim): 2576 length of query: 266 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 244 effective length of database: 17,147,199,772 effective search space: 4183916744368 effective search space used: 4183916744368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
