>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 443

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 10  PDSASHHPYPATQPDSRPPP 69
           P  A HHP+P + P  +PPP
Sbjct: 222 PHHADHHPHPHSHPHQQPPP 241

>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 10  PDSASHHPYPATQPDSRPPP 69
           P  A HHP+P + P  +PPP
Sbjct: 224 PHHADHHPHPHSHPHQQPPP 243

>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 10  PDSASHHPYPATQPDSRPPP 69
           P  A HHP+P + P  +PPP
Sbjct: 224 PHHADHHPHPHSHPHQQPPP 243

>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
           chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +1

Query: 7   PPDSASHHPYPATQPD--SRPPPGTLDRTDPCQ 99
           PP  A+ HP+PA  PD  ++PP  T+    P Q
Sbjct: 217 PPVQATTHPFPAVTPDLIAQPPVMTMVPPQPLQ 249

>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic|
           region
          Length = 713

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 16  SASHHPYPATQPDSRPPPGTLD 81
           + +HHPY    P S PPP  LD
Sbjct: 645 AGNHHPYMMVYPMSPPPPSGLD 666

>RGDSR_HUMAN (Q8IZJ4) Ral-GDS-related protein (hRGR)|
          Length = 473

 Score = 27.7 bits (60), Expect = 9.5
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
 Frame = +1

Query: 7   PPDSASHHPYPATQPDSRPPPGTL-------DRTDPCQG 102
           PP      P PA  P   PPPGT+       + + PC+G
Sbjct: 164 PPGYLHSAPGPAPAPGEGPPPGTVLEPQSAPESSCPCRG 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.312    0.136    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,641,508
Number of Sequences: 219361
Number of extensions: 238297
Number of successful extensions: 1596
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1586
length of database: 80,573,946
effective HSP length: 10
effective length of database: 78,380,336
effective search space used: 1881128064
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)