ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl17b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_469219.1| Oryza sativa (japonica cultivar-group), mRNA 78 3e-11
2dbj|AK121639.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
3gb|AC146718.2| Oryza sativa chromosome 3 B1130H05 genomic seque... 70 6e-09
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 70 6e-09
5gb|AC133930.4| Oryza sativa chromosome 3 BAC OSJNBa0039O18 genom... 70 6e-09
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
7ref|NM_104851.4| Arabidopsis thaliana zinc ion binding AT1G61690... 48 0.023
8gb|BT010746.1| Arabidopsis thaliana At1g61690 gene, complete cds 48 0.023
9dbj|AK221276.1| Arabidopsis thaliana mRNA for hypothetical prote... 48 0.023
10gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13... 48 0.023
11emb|AL513022.19| Mouse DNA sequence from clone RP23-3N21 on chro... 44 0.36
12emb|AL807774.10| Mouse DNA sequence from clone RP23-198L2 on chr... 44 0.36
13gb|AC126539.9| Mus musculus chromosome 8, clone RP24-112G5, comp... 42 1.4
14gb|AC141886.3| Mus musculus BAC clone RP24-87G24 from chromosome... 42 1.4
15gb|AC146540.2| Gasterosteus aculeatus clone CH213-16D10, complet... 42 1.4
16gb|AC006979.2| Homo sapiens BAC clone GS1-85B12 from 7, complete... 42 1.4
17gb|AC087235.13| Homo sapiens 12 BAC RP11-153K16 (Roswell Park Ca... 42 1.4
18gb|AC130675.7| Mus musculus chromosome 8, clone RP23-167D18, com... 42 1.4
19dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.4
20gb|AC124442.3| Mus musculus BAC clone RP24-178G20 from 7, comple... 42 1.4
21gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.6
22gb|AC161045.2| Mus musculus BAC clone RP24-326E14 from chromosom... 40 5.6
23ref|XM_470837.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
24gb|AC151968.3| Mus musculus BAC clone RP24-247B20 from chromosom... 40 5.6
25gb|AC121275.20| Mus musculus chromosome 8, clone RP24-234C3, com... 40 5.6
26gb|AC166982.4| Mus musculus chromosome 18, clone RP24-377P23, co... 40 5.6
27gb|AC155711.14| Mus musculus 10 BAC RP24-189K8 (Roswell Park Can... 40 5.6
28gb|AC121524.6| Mus musculus chromosome 18, clone RP24-342F19, co... 40 5.6
29emb|AL592205.4| Human DNA sequence from clone RP11-184D20 on chr... 40 5.6
30gb|AC093523.3| Homo sapiens chromosome 5 clone RP11-181E7, compl... 40 5.6
31dbj|AK156906.1| Mus musculus activated spleen cDNA, RIKEN full-l... 40 5.6
32gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 5.6
33dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
34gb|AC153515.8| Mus musculus 10 BAC RP23-425D13 (Roswell Park Can... 40 5.6
35gb|AC128712.9| Homo sapiens 3 BAC RP11-642L11 (Roswell Park Canc... 40 5.6
36gb|AC124243.3| Homo sapiens chromosome 8, clone CTD-3077F2, comp... 40 5.6
37gb|AC093248.3| Homo sapiens chromosome 5 clone RP11-141O11, comp... 40 5.6
38dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
39dbj|AP006246.1| Homo sapiens genomic DNA, chromosome 8, clone:RP... 40 5.6
40emb|CT010486.13| Mouse DNA sequence from clone RP23-129J22 on ch... 40 5.6
41gb|AC110817.6| Mus musculus BAC clone RP23-155B20 from 13, compl... 40 5.6
42gb|AC124074.2| Homo sapiens chromosome 8, clone RP11-781O9, comp... 40 5.6
43gb|L10064.1|STMMUTA Streptomyces cinnamonensis methylmalonyl-CoA... 40 5.6
44dbj|AB020862.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-onco... 40 5.6 
>ref|XM_469219.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3742

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 115/138 (83%), Gaps = 2/138 (1%)
 Strand = Plus / Plus

                                                                       
Query: 274 catgttggagaagatcgggttgccgccgaagccctcgatgcgaggggcgacctgngtgct 333
           |||||||||||||||||| |||||||| ||||| || ||||||||||| | ||| ||| |
Sbjct: 144 catgttggagaagatcggattgccgccaaagccatctatgcgaggggctagctgggtggt 203

                                                                       
Query: 334 ggacgcgtcaaactgccagggctgtgccgctcagttctccttgtt-acacggaggcatca 392
           ||||||  |  |||||||||| ||  | | ||| ||||||||||| ||  ||| ||||||
Sbjct: 204 ggacgcaacccactgccagggttgctctgttcaattctccttgttcactaggaagcatca 263

                             
Query: 393 ttgcc-aagatgtggagg 409
           ||||| ||||||||||||
Sbjct: 264 ttgccaaagatgtggagg 281
to top
>dbj|AK121639.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033054G22, full
           insert sequence
          Length = 3064

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 115/138 (83%), Gaps = 2/138 (1%)
 Strand = Plus / Plus

                                                                       
Query: 274 catgttggagaagatcgggttgccgccgaagccctcgatgcgaggggcgacctgngtgct 333
           |||||||||||||||||| |||||||| ||||| || ||||||||||| | ||| ||| |
Sbjct: 321 catgttggagaagatcggattgccgccaaagccatctatgcgaggggctagctgggtggt 380

                                                                       
Query: 334 ggacgcgtcaaactgccagggctgtgccgctcagttctccttgtt-acacggaggcatca 392
           ||||||  |  |||||||||| ||  | | ||| ||||||||||| ||  ||| ||||||
Sbjct: 381 ggacgcaacccactgccagggttgctctgttcaattctccttgttcactaggaagcatca 440

                             
Query: 393 ttgcc-aagatgtggagg 409
           ||||| ||||||||||||
Sbjct: 441 ttgccaaagatgtggagg 458
to top
>gb|AC146718.2| Oryza sativa chromosome 3  B1130H05 genomic sequence, complete sequence
          Length = 49565

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 274   catgttggagaagatcgggttgccgccgaagccctcgatgcgaggggcgacctgngtgct 333
             |||||||||||||||||| |||||||| ||||| || ||||||||||| | ||| ||| |
Sbjct: 42965 catgttggagaagatcggattgccgccaaagccatctatgcgaggggctagctgggtggt 42906

                   
Query: 334   ggacgc 339
             ||||||
Sbjct: 42905 ggacgc 42900
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                            
Query: 274      catgttggagaagatcgggttgccgccgaagccctcgatgcgaggggcgacctgngtgct 333
                |||||||||||||||||| |||||||| ||||| || ||||||||||| | ||| ||| |
Sbjct: 26142861 catgttggagaagatcggattgccgccaaagccatctatgcgaggggctagctgggtggt 26142920

                      
Query: 334      ggacgc 339
                ||||||
Sbjct: 26142921 ggacgc 26142926
to top
>gb|AC133930.4| Oryza sativa chromosome 3 BAC OSJNBa0039O18 genomic sequence, complete
             sequence
          Length = 139187

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 274   catgttggagaagatcgggttgccgccgaagccctcgatgcgaggggcgacctgngtgct 333
             |||||||||||||||||| |||||||| ||||| || ||||||||||| | ||| ||| |
Sbjct: 13689 catgttggagaagatcggattgccgccaaagccatctatgcgaggggctagctgggtggt 13630

                   
Query: 334   ggacgc 339
             ||||||
Sbjct: 13629 ggacgc 13624
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 58/66 (87%)
 Strand = Plus / Plus

                                                                            
Query: 274      catgttggagaagatcgggttgccgccgaagccctcgatgcgaggggcgacctgngtgct 333
                |||||||||||||||||| |||||||| ||||| || ||||||||||| | ||| ||| |
Sbjct: 26234170 catgttggagaagatcggattgccgccaaagccatctatgcgaggggctagctgggtggt 26234229

                      
Query: 334      ggacgc 339
                ||||||
Sbjct: 26234230 ggacgc 26234235
to top
>ref|NM_104851.4| Arabidopsis thaliana zinc ion binding AT1G61690 mRNA, complete cds
          Length = 3640

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 275 atgttggagaagatcgggttgccgccgaagcc 306
           ||||||||||||||||| || |||||||||||
Sbjct: 1   atgttggagaagatcggattaccgccgaagcc 32
to top
>gb|BT010746.1| Arabidopsis thaliana At1g61690 gene, complete cds
          Length = 3516

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 275 atgttggagaagatcgggttgccgccgaagcc 306
           ||||||||||||||||| || |||||||||||
Sbjct: 1   atgttggagaagatcggattaccgccgaagcc 32
to top
>dbj|AK221276.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds,
           clone: RAFL24-18-B08
          Length = 3821

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 275 atgttggagaagatcgggttgccgccgaagcc 306
           ||||||||||||||||| || |||||||||||
Sbjct: 78  atgttggagaagatcggattaccgccgaagcc 109
to top
>gb|AC005882.1|AC005882 Arabidopsis thaliana chromosome I BAC T13M11 genomic sequence, complete
             sequence
          Length = 87394

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 275   atgttggagaagatcgggttgccgccgaagcc 306
             ||||||||||||||||| || |||||||||||
Sbjct: 38677 atgttggagaagatcggattaccgccgaagcc 38646
to top
>emb|AL513022.19| Mouse DNA sequence from clone RP23-3N21 on chromosome 13 Contains the
              gene for a novel serine (or cysteine) proteinase inhibitor,
              clade B (Serpinb) member, six Serpin pseudogenes and a
              pseudogene similar to part of Casitas B-lineage lymphoma
              (Cbl), complete sequence
          Length = 208922

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 256    tttcttcctgcctgtagccatg 277
              ||||||||||||||||||||||
Sbjct: 171696 tttcttcctgcctgtagccatg 171675
to top
>emb|AL807774.10| Mouse DNA sequence from clone RP23-198L2 on chromosome 4, complete
             sequence
          Length = 67374

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 60    cccacccccaacacagacacca 81
             ||||||||||||||||||||||
Sbjct: 32368 cccacccccaacacagacacca 32389
to top
>gb|AC126539.9| Mus musculus chromosome 8, clone RP24-112G5, complete sequence
          Length = 158710

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 55    ccccacccacccccaacacagacac 79
             |||||||||||||||||||| ||||
Sbjct: 22244 ccccacccacccccaacacacacac 22220
to top
>gb|AC141886.3| Mus musculus BAC clone RP24-87G24 from chromosome 7, complete sequence
          Length = 173677

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 56     cccacccacccccaacacagacaccaagc 84
              ||||||||||||||||||| |||| ||||
Sbjct: 125868 cccacccacccccaacacacacacaaagc 125896
to top
>gb|AC146540.2| Gasterosteus aculeatus clone CH213-16D10, complete sequence
          Length = 212474

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 49    cggcgaccccacccacccccaacac 73
             |||||||||||||| ||||||||||
Sbjct: 49500 cggcgaccccacccccccccaacac 49476
to top
>gb|AC006979.2| Homo sapiens BAC clone GS1-85B12 from 7, complete sequence
          Length = 103563

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 56    cccacccacccccaacacaga 76
             |||||||||||||||||||||
Sbjct: 68510 cccacccacccccaacacaga 68490
to top
>gb|AC087235.13| Homo sapiens 12 BAC RP11-153K16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 157610

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 55    ccccacccacccccaacacagacac 79
             |||||||||||||||||||| ||||
Sbjct: 99650 ccccacccacccccaacacacacac 99626
to top
>gb|AC130675.7| Mus musculus chromosome 8, clone RP23-167D18, complete sequence
          Length = 193579

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 55    ccccacccacccccaacacagacac 79
             |||||||||||||||||||| ||||
Sbjct: 31610 ccccacccacccccaacacacacac 31634
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 286     gatcgggttgccgccgaagcc 306
               |||||||||||||||||||||
Sbjct: 8669458 gatcgggttgccgccgaagcc 8669478
to top
>gb|AC124442.3| Mus musculus BAC clone RP24-178G20 from 7, complete sequence
          Length = 177517

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 56    cccacccacccccaacacagacaccaagc 84
             ||||||||||||||||||| |||| ||||
Sbjct: 32072 cccacccacccccaacacacacacaaagc 32100
to top
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    cggcgacggatccggctcgg 130
              ||||||||||||||||||||
Sbjct: 579579 cggcgacggatccggctcgg 579598
to top
>gb|AC161045.2| Mus musculus BAC clone RP24-326E14 from chromosome 13, complete
             sequence
          Length = 150469

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    cccacccacccccaacacagacac 79
             ||||||||||||||||||| ||||
Sbjct: 33997 cccacccacccccaacacacacac 34020
to top
>ref|XM_470837.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 378

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 118 ggatccggctcggcggcgtg 137
           ||||||||||||||||||||
Sbjct: 88  ggatccggctcggcggcgtg 107
to top
>gb|AC151968.3| Mus musculus BAC clone RP24-247B20 from chromosome 9, complete sequence
          Length = 191668

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   aaggggcaagataggcaggg 255
             ||||||||||||||||||||
Sbjct: 64454 aaggggcaagataggcaggg 64435
to top
>gb|AC121275.20| Mus musculus chromosome 8, clone RP24-234C3, complete sequence
          Length = 158075

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     atccaaccctggtcctctgc 37
              ||||||||||||||||||||
Sbjct: 137666 atccaaccctggtcctctgc 137685
to top
>gb|AC166982.4| Mus musculus chromosome 18, clone RP24-377P23, complete sequence
          Length = 154269

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    cccacccacccccaacacagacac 79
             ||||||||||||||||||| ||||
Sbjct: 92718 cccacccacccccaacacacacac 92695
to top
>gb|AC155711.14| Mus musculus 10 BAC RP24-189K8 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 183897

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     cccacccacccccaacacagacac 79
              ||||||||||||||||||| ||||
Sbjct: 183523 cccacccacccccaacacacacac 183546
to top
>gb|AC121524.6| Mus musculus chromosome 18, clone RP24-342F19, complete sequence
          Length = 148255

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    cccacccacccccaacacagacac 79
             ||||||||||||||||||| ||||
Sbjct: 73472 cccacccacccccaacacacacac 73495
to top
>emb|AL592205.4| Human DNA sequence from clone RP11-184D20 on chromosome 1, complete
             sequence
          Length = 127824

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    cccacccacccccaacacagacac 79
             ||||||||||||||||||| ||||
Sbjct: 93560 cccacccacccccaacacacacac 93537
to top
>gb|AC093523.3| Homo sapiens chromosome 5 clone RP11-181E7, complete sequence
          Length = 156592

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    cccacccacccccaacacagacac 79
             |||||||| |||||||||||||||
Sbjct: 84364 cccacccaaccccaacacagacac 84387
to top
>dbj|AK156906.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830106N13 product:unclassifiable, full
           insert sequence
          Length = 3591

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 56  cccacccacccccaacacagacac 79
           ||||||||||||||||||| ||||
Sbjct: 266 cccacccacccccaacacacacac 289
to top
>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    ttgccgccgaagccctcgat 312
              ||||||||||||||||||||
Sbjct: 754816 ttgccgccgaagccctcgat 754835
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 263     ctgcctgtagccatgttgga 282
               ||||||||||||||||||||
Sbjct: 7374976 ctgcctgtagccatgttgga 7374995
to top
>gb|AC153515.8| Mus musculus 10 BAC RP23-425D13 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 209920

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    cccacccacccccaacacagacac 79
             ||||||||||||||||||| ||||
Sbjct: 36317 cccacccacccccaacacacacac 36340
to top
>gb|AC128712.9| Homo sapiens 3 BAC RP11-642L11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 114104

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   caagataggcagggtttctt 261
             ||||||||||||||||||||
Sbjct: 99437 caagataggcagggtttctt 99418
to top
>gb|AC124243.3| Homo sapiens chromosome 8, clone CTD-3077F2, complete sequence
          Length = 188240

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   gatgtggaggcctcttctga 419
             ||||||||||||||||||||
Sbjct: 42317 gatgtggaggcctcttctga 42298
to top
>gb|AC093248.3| Homo sapiens chromosome 5 clone RP11-141O11, complete sequence
          Length = 148585

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 56   cccacccacccccaacacagacac 79
            |||||||| |||||||||||||||
Sbjct: 3350 cccacccaaccccaacacagacac 3373
to top
>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0086N05
          Length = 163670

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 263    ctgcctgtagccatgttgga 282
              ||||||||||||||||||||
Sbjct: 101657 ctgcctgtagccatgttgga 101676
to top
>dbj|AP006246.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-159M14, complete
             sequence
          Length = 178517

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   gatgtggaggcctcttctga 419
             ||||||||||||||||||||
Sbjct: 45963 gatgtggaggcctcttctga 45982
to top
>emb|CT010486.13| Mouse DNA sequence from clone RP23-129J22 on chromosome 13, complete
             sequence
          Length = 199574

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 56    cccacccacccccaacacagacac 79
             ||||||||||||||||||| ||||
Sbjct: 34614 cccacccacccccaacacacacac 34637
to top
>gb|AC110817.6| Mus musculus BAC clone RP23-155B20 from 13, complete sequence
          Length = 200362

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 56     cccacccacccccaacacagacac 79
              ||||||||||||||||||| ||||
Sbjct: 175738 cccacccacccccaacacacacac 175761
to top
>gb|AC124074.2| Homo sapiens chromosome 8, clone RP11-781O9, complete sequence
          Length = 180673

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   gatgtggaggcctcttctga 419
             ||||||||||||||||||||
Sbjct: 62416 gatgtggaggcctcttctga 62397
to top
>gb|L10064.1|STMMUTA Streptomyces cinnamonensis methylmalonyl-CoA mutase small subunit
            (mutA) and large subunit (mutB) genes, complete cds's
          Length = 5732

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 296  ccgccgaagccctcgatgcg 315
            ||||||||||||||||||||
Sbjct: 3813 ccgccgaagccctcgatgcg 3832
to top
>dbj|AB020862.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of
            hepatocellular colorectal and non-small cell lung cancer
            , segment 5/11
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 400  gatgtggaggcctcttctga 419
            ||||||||||||||||||||
Sbjct: 3227 gatgtggaggcctcttctga 3246


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,292,243
Number of Sequences: 3902068
Number of extensions: 3292243
Number of successful extensions: 89125
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88851
Number of HSP's gapped (non-prelim): 274
length of query: 419
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 397
effective length of database: 17,147,199,772
effective search space: 6807438309484
effective search space used: 6807438309484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top