ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl17b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467437.1| Oryza sativa (japonica cultivar-group), mRNA 64 7e-08
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 64 7e-08
3dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic D... 64 7e-08
4dbj|AK065045.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 7e-08
5gb|U72144.2|U72144 Streptomyces collinus 1-cyclohexenylcarbonyl ... 40 1.1
6gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 38 4.2
7ref|XM_657255.1| Aspergillus nidulans FGSC A4 hypothetical prote... 38 4.2
8emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chr... 38 4.2
9emb|AL512330.13| Human DNA sequence from clone RP11-334N17 on ch... 38 4.2
10emb|AL353618.11| Human DNA sequence from clone RP11-550K21 on ch... 38 4.2
11gb|AC093551.3| Drosophila melanogaster 3L BAC RP98-48C13 (Roswel... 38 4.2
12gb|CP000264.1| Jannaschia sp. CCS1, complete genome 38 4.2
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.2
14dbj|AP003296.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.2
15dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.2
16tpe|BN000505.3| TPA: TPA_inf: Magnaporthe grisea 70-15 syn8 gene... 38 4.2
17gb|AC151487.3| Aotus nancymaae clone CH258-321B24, complete sequ... 38 4.2
18gb|AE003592.3| Drosophila melanogaster chromosome 3L, section 73... 38 4.2

>ref|XM_467437.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3793

 Score = 63.9 bits (32), Expect = 7e-08
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 57  tggcgatggagatcgagtcgagcgtcacggcggaggactg 96
           ||||||||||||||||||| | ||||||||||||||||||
Sbjct: 277 tggcgatggagatcgagtccaccgtcacggcggaggactg 316



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 63.9 bits (32), Expect = 7e-08
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 57       tggcgatggagatcgagtcgagcgtcacggcggaggactg 96
                ||||||||||||||||||| | ||||||||||||||||||
Sbjct: 29513920 tggcgatggagatcgagtccaccgtcacggcggaggactg 29513881



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>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1038_A06
          Length = 147836

 Score = 63.9 bits (32), Expect = 7e-08
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                      
Query: 57     tggcgatggagatcgagtcgagcgtcacggcggaggactg 96
              ||||||||||||||||||| | ||||||||||||||||||
Sbjct: 108950 tggcgatggagatcgagtccaccgtcacggcggaggactg 108911



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>dbj|AK065045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I02, full
           insert sequence
          Length = 3793

 Score = 63.9 bits (32), Expect = 7e-08
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                   
Query: 57  tggcgatggagatcgagtcgagcgtcacggcggaggactg 96
           ||||||||||||||||||| | ||||||||||||||||||
Sbjct: 277 tggcgatggagatcgagtccaccgtcacggcggaggactg 316



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>gb|U72144.2|U72144 Streptomyces collinus 1-cyclohexenylcarbonyl CoA reductase (chcA)
            gene, complete cds
          Length = 8763

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 52   ggccgtggcgatggagatcg 71
            ||||||||||||||||||||
Sbjct: 2004 ggccgtggcgatggagatcg 2023



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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 52      ggccgtggcgatggagatc 70
               |||||||||||||||||||
Sbjct: 2302115 ggccgtggcgatggagatc 2302133



 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 47      tctctggccgtggcgatgg 65
               |||||||||||||||||||
Sbjct: 1908362 tctctggccgtggcgatgg 1908344



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>ref|XM_657255.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4743.2), mRNA
          Length = 600

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 48  ctctggccgtggcgatggagatc 70
           ||||||||||||||| |||||||
Sbjct: 443 ctctggccgtggcgaaggagatc 465



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>emb|AL590128.11| Human DNA sequence from clone RP11-312B8 on chromosome 1 Contains a novel
              gene, the 5' end of the CAMTA1 gene for calmodulin binding
              transcription activator 1, a ribosomal protein L37 (RPL37)
              pseudogene and a CpG island, complete sequence
          Length = 204394

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 37     ggggctcctctctctggcc 55
              |||||||||||||||||||
Sbjct: 203689 ggggctcctctctctggcc 203707



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>emb|AL512330.13| Human DNA sequence from clone RP11-334N17 on chromosome 1 Contains a
            novel gene, complete sequence
          Length = 61505

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 37   ggggctcctctctctggcc 55
            |||||||||||||||||||
Sbjct: 1295 ggggctcctctctctggcc 1313



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>emb|AL353618.11| Human DNA sequence from clone RP11-550K21 on chromosome 6, complete
             sequence
          Length = 32451

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    ggggctcctctctctggcc 55
             |||||||||||||||||||
Sbjct: 23256 ggggctcctctctctggcc 23238



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>gb|AC093551.3| Drosophila melanogaster 3L BAC RP98-48C13 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 179055

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     tggccgtggcgatggagat 69
              |||||||||||||||||||
Sbjct: 128829 tggccgtggcgatggagat 128811



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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 54      ccgtggcgatggagatcga 72
               |||||||||||||||||||
Sbjct: 4053377 ccgtggcgatggagatcga 4053395



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 51       tggccgtggcgatggagatcgag 73
                ||||| |||||||||||||||||
Sbjct: 21682833 tggccatggcgatggagatcgag 21682811



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>dbj|AP003296.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0697C12
          Length = 149098

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 51     tggccgtggcgatggagatcgag 73
              ||||| |||||||||||||||||
Sbjct: 139386 tggccatggcgatggagatcgag 139364



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>dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0002B05
          Length = 141275

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 51    tggccgtggcgatggagatcgag 73
             ||||| |||||||||||||||||
Sbjct: 34884 tggccatggcgatggagatcgag 34862



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>tpe|BN000505.3| TPA: TPA_inf: Magnaporthe grisea 70-15 syn8 gene for putative
             polyketide synthase, exons 1-2
          Length = 13004

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 51    tggccgtggcgatggagat 69
             |||||||||||||||||||
Sbjct: 10398 tggccgtggcgatggagat 10380



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>gb|AC151487.3| Aotus nancymaae clone CH258-321B24, complete sequence
          Length = 167396

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 34     actggggctcctctctctg 52
              |||||||||||||||||||
Sbjct: 118284 actggggctcctctctctg 118302



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>gb|AE003592.3| Drosophila melanogaster chromosome 3L, section 73 of 83 of the complete
              sequence
          Length = 323816

 Score = 38.2 bits (19), Expect = 4.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 51     tggccgtggcgatggagat 69
              |||||||||||||||||||
Sbjct: 121709 tggccgtggcgatggagat 121691


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 570,612
Number of Sequences: 3902068
Number of extensions: 570612
Number of successful extensions: 52522
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52222
Number of HSP's gapped (non-prelim): 300
length of query: 96
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 75
effective length of database: 17,151,101,840
effective search space: 1286332638000
effective search space used: 1286332638000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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