ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17b04 |
|---|---|
| Clone Library Name | barley_pub |
>IPO11_HUMAN (Q9UI26) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)| Length = 975 Score = 38.1 bits (87), Expect = 0.010 Identities = 26/69 (37%), Positives = 34/69 (49%) Frame = +1 Query: 226 SMSLDVTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLA 405 S S V Q+L A S D ++ K AEE LKQ++ Q PGF N+ R LA Sbjct: 5 SASTVVLQVLTQATSQDTAVLKPAEEQLKQWETQ--PGFYSVLLNIFTNHTLDINVRWLA 62 Query: 406 GLILKNALD 432 L K+ +D Sbjct: 63 VLYFKHGID 71
>IPO11_MOUSE (Q8K2V6) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)| Length = 975 Score = 37.7 bits (86), Expect = 0.013 Identities = 26/69 (37%), Positives = 34/69 (49%) Frame = +1 Query: 226 SMSLDVTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLA 405 S S V Q+L A S D ++ K AEE LKQ++ Q PGF N+ R LA Sbjct: 5 SASSVVLQVLTQATSQDTAVLKPAEEQLKQWETQ--PGFYSVLLNIFTNHTLDINVRWLA 62 Query: 406 GLILKNALD 432 L K+ +D Sbjct: 63 VLYFKHGID 71
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 35.8 bits (81), Expect = 0.049 Identities = 20/67 (29%), Positives = 32/67 (47%) Frame = +1 Query: 235 LDVTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLAGLI 414 ++ + L S D ++R +AE+ L+ + + ELAN+ R AGL Sbjct: 1 MNAGEFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLA 60 Query: 415 LKNALDA 435 LKNA+ A Sbjct: 61 LKNAITA 67
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 33.1 bits (74), Expect = 0.31 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +1 Query: 241 VTQILLSAQSADGSIRKHAEESLKQF-QEQNLPGFXXXXXXELANNEKPEESRRLAGLIL 417 + Q+L +QS D +I++ ++ L+Q Q + + +L + ++P +R L+GLIL Sbjct: 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLIL 72 Query: 418 KNALDA 435 KN + A Sbjct: 73 KNNVKA 78
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 33.1 bits (74), Expect = 0.31 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Frame = +1 Query: 241 VTQILLSAQSADGSIRKHAEESLKQF-QEQNLPGFXXXXXXELANNEKPEESRRLAGLIL 417 + Q+L +QS D +I++ ++ L+Q Q + + +L + ++P +R L+GLIL Sbjct: 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSGLIL 72 Query: 418 KNALDA 435 KN + A Sbjct: 73 KNNVKA 78
>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)| Length = 897 Score = 30.8 bits (68), Expect = 1.6 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = +1 Query: 241 VTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEE-SRRLAGLIL 417 V Q+L +QS + + ++ ++ LKQ + P F L + +E +R L+GLIL Sbjct: 13 VLQLLKDSQSPNTATQRIVQDKLKQLNQ--FPDFNNYLIFVLTRLKSEDEPTRSLSGLIL 70 Query: 418 KNALDA 435 KN + A Sbjct: 71 KNNVKA 76
>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)| Length = 887 Score = 30.8 bits (68), Expect = 1.6 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = +1 Query: 241 VTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEE-SRRLAGLIL 417 V Q+L +QS + + ++ ++ LKQ + P F L + +E +R L+GLIL Sbjct: 13 VLQLLKDSQSPNTATQRIVQDKLKQLNQ--FPDFNNYLIFVLTRLKSEDEPTRSLSGLIL 70 Query: 418 KNALDA 435 KN + A Sbjct: 71 KNNVKA 76
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 30.4 bits (67), Expect = 2.0 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = +1 Query: 235 LDVTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLAGLI 414 +++ IL S D + A++ L++ +NLP F LAN + +R AGL Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 415 LKNAL 429 +KN+L Sbjct: 61 IKNSL 65
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 30.4 bits (67), Expect = 2.0 Identities = 20/65 (30%), Positives = 33/65 (50%) Frame = +1 Query: 235 LDVTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLAGLI 414 +++ IL S D + A++ L++ +NLP F LAN + +R AGL Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 415 LKNAL 429 +KN+L Sbjct: 61 IKNSL 65
>PARD3_RAT (Q9Z340) Partitioning-defective 3 homolog (PARD-3) (PAR-3)| (Atypical PKC isotype-specific-interacting protein) (ASIP) (Atypical PKC-specific-binding protein) (ASBP) Length = 1337 Score = 30.4 bits (67), Expect = 2.0 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Frame = +2 Query: 80 GLAPSPNRRATASAPSRDLGRLKLRRAVQLRHT--------RRRQLPPHLSSQQEESA 229 GL SP R A S + G+ +L V + H R LPPHLS Q S+ Sbjct: 724 GLDESPTRNAALSRIMGESGKCQLSPTVNMPHDDTVMIEDDRLPVLPPHLSDQSSSSS 781
>PARD3_MOUSE (Q99NH2) Partitioning-defective 3 homolog (PARD-3) (PAR-3)| (Atypical PKC isotype-specific-interacting protein) (ASIP) (Ephrin-interacting protein) (PHIP) Length = 1333 Score = 30.0 bits (66), Expect = 2.7 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 8/58 (13%) Frame = +2 Query: 80 GLAPSPNRRATASAPSRDLGRLKLRRAVQLRHT--------RRRQLPPHLSSQQEESA 229 GL SP R A A SR +G+ +L V + H R LPPHLS Q S+ Sbjct: 724 GLDESPTRNA---ALSRIMGKCQLSPTVNMPHDDTVMIEDDRLPVLPPHLSDQSSSSS 778
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit)| (Protein ketel) Length = 884 Score = 30.0 bits (66), Expect = 2.7 Identities = 21/67 (31%), Positives = 29/67 (43%) Frame = +1 Query: 229 MSLDVTQILLSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLAG 408 +++ + IL S D + A+ L+Q NLP F L N +R AG Sbjct: 5 IAMQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILVNTANSAVARMAAG 64 Query: 409 LILKNAL 429 L LKN L Sbjct: 65 LQLKNHL 71
>MDHP_MESCR (Q05145) Malate dehydrogenase [NADP], chloroplast precursor (EC| 1.1.1.82) (NADP-MDH) Length = 441 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/55 (29%), Positives = 26/55 (47%) Frame = -3 Query: 417 EDQTSQPAALLRFLVVGQLT*EGEQKTWEVLLLKLLEAFFSMLSNRAISRLRTQE 253 E QT +P F + L E E KTW+ ++ + M+SN + +L + E Sbjct: 67 EGQTGKPECYGIFCLTYDLKAEEETKTWKKMITIAVSGAAGMISNHLLFKLASGE 121
>DP2L_THEVO (Q97CR6) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)| Length = 1088 Score = 28.5 bits (62), Expect = 7.7 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 8/53 (15%) Frame = +1 Query: 277 GSIRKHAEESLKQFQEQNLPGFXXXXXXELA--------NNEKPEESRRLAGL 411 GS+ K+ +E+LK +E N+P + LA + EKP+ + ++ GL Sbjct: 1033 GSVIKYLDETLKIEKEYNIPKYLKERIDNLARTIKETFPDEEKPDAAIKITGL 1085
>NMD5_YEAST (P46970) Nonsense-mediated mRNA decay protein 5| Length = 1048 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Frame = +1 Query: 235 LDVTQIL---LSAQSADGSIRKHAEESLKQFQEQNLPGFXXXXXXELANNEKPEESRRLA 405 +D+T++L + ++R +AE LK + +PGF +A +E PE + A Sbjct: 1 MDITELLQCFACTLDHNAAVRTNAETHLKNASK--VPGFLGACLDIIAADEVPENIKLSA 58 Query: 406 GLILKNAL 429 L KN + Sbjct: 59 SLYFKNKI 66 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.128 0.345 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,269,795 Number of Sequences: 219361 Number of extensions: 696415 Number of successful extensions: 1423 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1410 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1423 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
