ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17b04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 214 bits (108), Expect = 2e-52 Identities = 174/196 (88%) Strand = Plus / Plus Query: 236 tggatgttactcaaatactcttgagtgcgcaatctgctgatggctcgattagaaagcatg 295 ||||| |||||||| | ||||||||||| |||||| |||||||| ||| ||| |||| || Sbjct: 23437818 tggatattactcaagttctcttgagtgcacaatctcctgatggcgcgactaggaagcttg 23437877 Query: 296 ctgaagaaagcctcaagcagtttcaggagcaaaacctcccaggttttttgctctccctct 355 ||||||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||| Sbjct: 23437878 ctgaagaaagccttaagcagttccaggagcaaaacctcccaggtttcttgttctccctct 23437937 Query: 356 caagtgagttggccaacaacgagaaacctgaggagagccgcaggttggctggtttgatcc 415 ||| |||||||||||| | |||||||||||||| ||||| ||||||||||| ||||| | Sbjct: 23437938 caaatgagttggccaatgaggagaaacctgaggaaagccggaggttggctggcttgattc 23437997 Query: 416 tcaagaatgcgctgga 431 |||||||||| ||||| Sbjct: 23437998 tcaagaatgcactgga 23438013
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 214 bits (108), Expect = 2e-52 Identities = 174/196 (88%) Strand = Plus / Plus Query: 236 tggatgttactcaaatactcttgagtgcgcaatctgctgatggctcgattagaaagcatg 295 ||||| |||||||| | ||||||||||| |||||| |||||||| ||| ||| |||| || Sbjct: 23366009 tggatattactcaagttctcttgagtgcacaatctcctgatggcgcgactaggaagcttg 23366068 Query: 296 ctgaagaaagcctcaagcagtttcaggagcaaaacctcccaggttttttgctctccctct 355 ||||||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||| Sbjct: 23366069 ctgaagaaagccttaagcagttccaggagcaaaacctcccaggtttcttgttctccctct 23366128 Query: 356 caagtgagttggccaacaacgagaaacctgaggagagccgcaggttggctggtttgatcc 415 ||| |||||||||||| | |||||||||||||| ||||| ||||||||||| ||||| | Sbjct: 23366129 caaatgagttggccaatgaggagaaacctgaggaaagccggaggttggctggcttgattc 23366188 Query: 416 tcaagaatgcgctgga 431 |||||||||| ||||| Sbjct: 23366189 tcaagaatgcactgga 23366204
>emb|AL731784.3|CNS08C88 Oryza sativa chromosome 12, . BAC OSJNBa0016C14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 162261 Score = 214 bits (108), Expect = 2e-52 Identities = 174/196 (88%) Strand = Plus / Minus Query: 236 tggatgttactcaaatactcttgagtgcgcaatctgctgatggctcgattagaaagcatg 295 ||||| |||||||| | ||||||||||| |||||| |||||||| ||| ||| |||| || Sbjct: 64341 tggatattactcaagttctcttgagtgcacaatctcctgatggcgcgactaggaagcttg 64282 Query: 296 ctgaagaaagcctcaagcagtttcaggagcaaaacctcccaggttttttgctctccctct 355 ||||||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||| Sbjct: 64281 ctgaagaaagccttaagcagttccaggagcaaaacctcccaggtttcttgttctccctct 64222 Query: 356 caagtgagttggccaacaacgagaaacctgaggagagccgcaggttggctggtttgatcc 415 ||| |||||||||||| | |||||||||||||| ||||| ||||||||||| ||||| | Sbjct: 64221 caaatgagttggccaatgaggagaaacctgaggaaagccggaggttggctggcttgattc 64162 Query: 416 tcaagaatgcgctgga 431 |||||||||| ||||| Sbjct: 64161 tcaagaatgcactgga 64146
>dbj|AB011271.1| Oryza sativa (japonica cultivar-group) mRNA for importin-beta2, partial cds Length = 3676 Score = 214 bits (108), Expect = 2e-52 Identities = 174/196 (88%) Strand = Plus / Plus Query: 236 tggatgttactcaaatactcttgagtgcgcaatctgctgatggctcgattagaaagcatg 295 ||||| |||||||| | ||||||||||| |||||| |||||||| ||| ||| |||| || Sbjct: 103 tggatattactcaagttctcttgagtgcacaatctcctgatggcgcgactaggaagcttg 162 Query: 296 ctgaagaaagcctcaagcagtttcaggagcaaaacctcccaggttttttgctctccctct 355 ||||||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||| Sbjct: 163 ctgaagaaagccttaagcagttccaggagcaaaacctcccaggtttcttgttctccctct 222 Query: 356 caagtgagttggccaacaacgagaaacctgaggagagccgcaggttggctggtttgatcc 415 ||| |||||||||||| | |||||||||||||| ||||| ||||||||||| ||||| | Sbjct: 223 caaatgagttggccaatgaggagaaacctgaggaaagccggaggttggctggcttgattc 282 Query: 416 tcaagaatgcgctgga 431 |||||||||| ||||| Sbjct: 283 tcaagaatgcactgga 298
>ref|NM_124727.2| Arabidopsis thaliana protein transporter AT5G53480 mRNA, complete cds Length = 3811 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 289 aagcatgctgaagaaagcctcaagcagtttcaggagcaaaacct 332 ||||| || |||||||| || ||||||||||||||||||||||| Sbjct: 186 aagcacgcggaagaaagtcttaagcagtttcaggagcaaaacct 229
>dbj|AK117217.1| Arabidopsis thaliana At5g53480 mRNA for putative importin beta, complete cds, clone: RAFL16-76-N11 Length = 3810 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 289 aagcatgctgaagaaagcctcaagcagtttcaggagcaaaacct 332 ||||| || |||||||| || ||||||||||||||||||||||| Sbjct: 186 aagcacgcggaagaaagtcttaagcagtttcaggagcaaaacct 229
>dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6 Length = 82952 Score = 56.0 bits (28), Expect = 1e-04 Identities = 40/44 (90%) Strand = Plus / Plus Query: 289 aagcatgctgaagaaagcctcaagcagtttcaggagcaaaacct 332 ||||| || |||||||| || ||||||||||||||||||||||| Sbjct: 309 aagcacgcggaagaaagtcttaagcagtttcaggagcaaaacct 352
>gb|AC148001.6| Mus musculus BAC clone RP24-82P9 from chromosome 18, complete sequence Length = 181022 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcctctc 23 ||||||||||||||||||||||| Sbjct: 42100 ctcccctctcccctcctcctctc 42122
>gb|AC123857.4| Mus musculus BAC clone RP23-344L21 from chromosome 13, complete sequence Length = 192371 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctctc 23 ||||||||||||||||||||||| Sbjct: 143978 ctcccctctcccctcctcctctc 143956
>emb|AL591675.11| Mouse DNA sequence from clone RP23-420L2 on chromosome 2, complete sequence Length = 111399 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctctc 23 ||||||||||||||||||||||| Sbjct: 93913 ctcccctctcccctcctcctctc 93891
>gb|AC119873.38| Mus musculus chromosome 3, clone RP24-275F18, complete sequence Length = 183408 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctctc 23 ||||||||||||||||||||||| Sbjct: 177371 ctcccctctcccctcctcctctc 177349
>gb|AC130823.4| Mus musculus BAC clone RP23-320F5 from chromosome 15, complete sequence Length = 193211 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctctc 23 ||||||||||||||||||||||| Sbjct: 24638 ctcccctctcccctcctcctctc 24616
>gb|AC142228.4| Mus musculus BAC clone RP23-427M10 from 3, complete sequence Length = 171554 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctctc 23 ||||||||||||||||||||||| Sbjct: 50598 ctcccctctcccctcctcctctc 50576
>gb|AC138737.10| Mus musculus chromosome 5, clone RP23-307F20, complete sequence Length = 216064 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 269 ctgctgatggctcgattagaaagcatgctg 298 |||||| ||||||| ||||||||||||||| Sbjct: 59807 ctgctgttggctcgtttagaaagcatgctg 59836
>gb|AC129918.10| Homo sapiens chromosome 8, clone CTD-2132E17, complete sequence Length = 142854 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 2 tcccctctcccctcctcctctc 23 |||||||||||||||||||||| Sbjct: 86251 tcccctctcccctcctcctctc 86230
>emb|BX682229.4| Mouse DNA sequence from clone RP24-531M17 on chromosome 2, complete sequence Length = 57881 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctct 22 |||||||||||||||||||||| Sbjct: 55442 ctcccctctcccctcctcctct 55421
>gb|AC134854.3| Mus musculus BAC clone RP24-286P14 from 8, complete sequence Length = 152471 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctct 22 |||||||||||||||||||||| Sbjct: 65285 ctcccctctcccctcctcctct 65264
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 127545 ctcccctctcccctcctcctc 127565
>ref|XM_475797.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 531 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 11 ctcccctctcccctcctcctc 31
>gb|AC169509.1| Mus musculus BAC clone RP23-137L8 from chromosome 16, complete sequence Length = 206061 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 116812 ctcccctctcccctcctcctc 116792
>emb|CT009494.4| Mouse DNA sequence from clone RP23-125D7 on chromosome 13, complete sequence Length = 206416 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 154125 ctcccctctcccctcctcctc 154105
>gb|AC002039.1|HUAC002039 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-13F4 ~complete genomic sequence, complete sequence Length = 127485 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 32550 ctcccctctcccctcctcctc 32570
>gb|AC117237.2| Mus musculus BAC clone RP23-431G18 from 13, complete sequence Length = 200110 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 81663 ctcccctctcccctcctcctc 81643
>emb|CR381640.8| Human DNA sequence from clone RP13-854E9 on chromosome X, complete sequence Length = 63682 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 62719 ctcccctctcccctcctcctc 62699 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 62701 ctcccctctcccctcctcctc 62681 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 62683 ctcccctctcccctcctcctc 62663
>emb|BX842570.11| Human DNA sequence from clone RP11-23N11 on chromosome X, complete sequence Length = 47155 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctctcgc 25 |||||||||||||||| |||||||| Sbjct: 31878 ctcccctctcccctccccctctcgc 31854
>ref|NG_002796.2| Homo sapiens polycystic kidney disease 1 (autosomal dominant) pseudogene 3 (PKD1P3) on chromosome 16 Length = 24432 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 16744 ctcccctctcccctcctcctc 16764
>gb|AC138932.4| Homo sapiens chromosome 16 clone RP11-680G24, complete sequence Length = 180798 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 111047 ctcccctctcccctcctcctc 111027
>gb|AC010488.7| Homo sapiens chromosome 16 clone CTD-2332D4, complete sequence Length = 109340 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 25814 ctcccctctcccctcctcctc 25794
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 26614070 ctcccctctcccctcctcctc 26614090
>gb|AC136427.3| Homo sapiens chromosome 16 clone RP11-103G5, complete sequence Length = 145971 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 76003 ctcccctctcccctcctcctc 75983
>dbj|AK073867.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033075I05, full insert sequence Length = 1481 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 130 ctcccctctcccctcctcctc 150
>emb|BX465216.5| Mouse DNA sequence from clone RP23-282I18 on chromosome 4, complete sequence Length = 97410 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcctc 21 ||||||||||||||||||||| Sbjct: 10455 ctcccctctcccctcctcctc 10475
>gb|AC129777.4| Mus musculus BAC clone RP23-281H23 from 8, complete sequence Length = 228174 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 330 cctcccaggttttttgctctc 350 ||||||||||||||||||||| Sbjct: 134292 cctcccaggttttttgctctc 134312
>ref|XM_523802.1| PREDICTED: Pan troglodytes similar to Noggin precursor (LOC468413), mRNA Length = 1365 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ctctcccctcctcctctcgc 25 |||||||||||||||||||| Sbjct: 314 ctctcccctcctcctctcgc 295
>gb|AC105080.8| Mus musculus chromosome 3, clone RP24-313N2, complete sequence Length = 195212 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ccctctcccctcctcctctc 23 |||||||||||||||||||| Sbjct: 36919 ccctctcccctcctcctctc 36900
>gb|AC137924.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0095K08, complete sequence Length = 180999 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tcccctctcccctcctcctc 21 |||||||||||||||||||| Sbjct: 130171 tcccctctcccctcctcctc 130152
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ccgccgtcgccgaatcgcgg 56 |||||||||||||||||||| Sbjct: 909969 ccgccgtcgccgaatcgcgg 909950
>gb|U80840.1| Caenorhabditis elegans cosmid F08D12, complete sequence Length = 33268 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 338 gttttttgctctccctctca 357 |||||||||||||||||||| Sbjct: 4591 gttttttgctctccctctca 4572
>gb|AC094749.8| Rattus norvegicus 1 BAC CH230-5H10 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 77448 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tcccctctcccctcctcctc 21 |||||||||||||||||||| Sbjct: 38262 tcccctctcccctcctcctc 38243
>gb|AC116812.10| Mus musculus chromosome 15, clone RP24-357G13, complete sequence Length = 183993 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcctctcgcagg 28 |||||||| |||||||||||||| |||| Sbjct: 49048 ctcccctcccccctcctcctctcacagg 49021
>gb|AC146018.3| Pan troglodytes BAC clone RP43-135A21 from 7, complete sequence Length = 177841 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 101258 ctcccctctcccctcctcct 101239
>gb|AC125192.3| Mus musculus BAC clone RP23-266B4 from chromosome 8, complete sequence Length = 199459 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ccctctcccctcctcctctc 23 |||||||||||||||||||| Sbjct: 13543 ccctctcccctcctcctctc 13562
>gb|AY523976.1|AY523972S5 Azospirillum brasilense plasmid 90 MDa, partial sequence Length = 32896 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 gctcccgcgccgcccaatcg 77 |||||||||||||||||||| Sbjct: 10651 gctcccgcgccgcccaatcg 10670
>gb|AC122043.4| Mus musculus BAC clone RP24-448C16 from chromosome 5, complete sequence Length = 187106 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ccctctcccctcctcctctc 23 |||||||||||||||||||| Sbjct: 33056 ccctctcccctcctcctctc 33075
>gb|AC126265.3| Mus musculus BAC clone RP23-383O12 from chromosome 16, complete sequence Length = 186172 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 agcagccagcaagaagagtc 225 |||||||||||||||||||| Sbjct: 56970 agcagccagcaagaagagtc 56989
>gb|AC098728.3| Mus musculus BAC clone RP23-3H22 from 15, complete sequence Length = 245757 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ccctctcccctcctcctctc 23 |||||||||||||||||||| Sbjct: 74073 ccctctcccctcctcctctc 74054
>emb|CR721539.2|CNS0GJOP Tetraodon nigroviridis full-length cDNA Length = 999 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 cccctctcccctcctcctct 22 |||||||||||||||||||| Sbjct: 671 cccctctcccctcctcctct 652
>gb|AC102429.11| Mus musculus chromosome 18, clone RP24-93K11, complete sequence Length = 216331 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 198 cccatctcagcagccagcaagaag 221 ||||||||| |||||||||||||| Sbjct: 30675 cccatctcatcagccagcaagaag 30652
>emb|CR651084.2|CNS0F1CI Tetraodon nigroviridis full-length cDNA Length = 587 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 cccctctcccctcctcctct 22 |||||||||||||||||||| Sbjct: 258 cccctctcccctcctcctct 239
>emb|CR635359.2|CNS0EP7P Tetraodon nigroviridis full-length cDNA Length = 474 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 cccctctcccctcctcctct 22 |||||||||||||||||||| Sbjct: 299 cccctctcccctcctcctct 280
>emb|AL590666.8| Human DNA sequence from clone RP11-66D17 on chromosome 1 Contains the 3' end of the SH2D2A gene for SH2 domain protein 2A, the PRCC gene for papillary renal cell carcinoma (translocation-associated), the HDGF gene for hepatoma-derived growth factor (high-mobility group protein 1-like), the MRPL24 gene for mitochondrial ribosomal protein L24, the gene for CGI-41 protein (CGI-41), a novel gene (FLJ12671), a novel gene, the CRABP2 gene for cellular retinoic acid binding protein 2, a novel gene, the gene for NES nestin, the 5' end of a novel gene, the 3' end of the BCAN gene for brevican and 5 CpG islands, complete sequence Length = 160597 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 38775 ctcccctctcccctcctcct 38756
>gb|CP000322.1| Nitrobacter hamburgensis X14 plasmid 3, complete sequence Length = 121408 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 aagcctcaagcagtttcaggagca 326 ||||||||||||| |||||||||| Sbjct: 99548 aagcctcaagcagcttcaggagca 99571 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 aagcctcaagcagtttcaggagca 326 ||||||||||||| |||||||||| Sbjct: 90152 aagcctcaagcagcttcaggagca 90175 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 aagcctcaagcagtttcaggagca 326 ||||||||||||| |||||||||| Sbjct: 52885 aagcctcaagcagcttcaggagca 52908
>gb|CP000320.1| Nitrobacter hamburgensis X14 plasmid 1, complete sequence Length = 294829 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 aagcctcaagcagtttcaggagca 326 ||||||||||||| |||||||||| Sbjct: 192812 aagcctcaagcagcttcaggagca 192835 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 aagcctcaagcagtttcaggagca 326 ||||||||||||| |||||||||| Sbjct: 181239 aagcctcaagcagcttcaggagca 181262
>ref|XM_505000.1| Yarrowia lipolytica CLIB122, YALI0F04642g predicted mRNA Length = 1014 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 gagctcccgcgccgcccaat 75 |||||||||||||||||||| Sbjct: 639 gagctcccgcgccgcccaat 620
>emb|AL357503.12| Human DNA sequence from clone RP5-899C14 on chromosome 20 Contains the 3' end of the C20orf101 gene, complete sequence Length = 133288 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 ccccatctcagcagccagca 216 |||||||||||||||||||| Sbjct: 103183 ccccatctcagcagccagca 103164
>gb|AY335946.1| Homo sapiens homeodomain protein IRXB3 (IRX6) gene, complete cds Length = 10821 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 2999 ctcccctctcccctcctcct 3018
>emb|AL136456.13| Human DNA sequence from clone RP11-97K3 on chromosome 1q31.1-31.3, complete sequence Length = 158745 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tcccctctcccctcctcctc 21 |||||||||||||||||||| Sbjct: 89323 tcccctctcccctcctcctc 89342
>emb|AL031229.2|HS15D7 Human DNA sequence from clone RP1-15D7 on chromosome 6p22.1-22.3 Contains a 60S ribosomal protein L8 (RPL8) pseudogene, ESTs, STSs, GSS and two CpG islands, complete sequence Length = 61450 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 agaaagcctcaagcagtttc 319 |||||||||||||||||||| Sbjct: 48756 agaaagcctcaagcagtttc 48737
>gb|AC164663.5| Mus musculus 10 BAC RP23-44F24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 192449 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tcccctctcccctcctcctc 21 |||||||||||||||||||| Sbjct: 99308 tcccctctcccctcctcctc 99289
>gb|AC157780.9| Mus musculus chromosome 3, clone RP23-331L5, complete sequence Length = 184569 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 73081 ctcccctctcccctcctcct 73100
>emb|AL669844.20| Mouse DNA sequence from clone RP23-395O6 on chromosome 11 Contains the 3' end of a novel gene, a novel gene, the Stk10 gene for serine/threonine kinase 10, the 5' end of the Fbxw1b gene for F-box and WD-40 domain protein 1B and two CpG islands, complete sequence Length = 221145 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 36249 ctcccctctcccctcctcct 36230
>emb|BX647756.1|HSM807902 Homo sapiens genomic DNA; cDNA DKFZp686H2131 (from clone DKFZp686H2131) Length = 4131 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 1667 ctcccctctcccctcctcct 1686
>gb|BC065682.1| Danio rerio transducin (beta)-like 2, mRNA (cDNA clone MGC:77216 IMAGE:6962668), complete cds Length = 1739 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 catgctgaagaaagcctcaa 311 |||||||||||||||||||| Sbjct: 1530 catgctgaagaaagcctcaa 1549
>gb|AE006029.1| Caulobacter crescentus CB15 section 355 of 359 of the complete genome Length = 10213 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 cgcgccgcccaatcgcagggctcg 86 |||||||||||||||| ||||||| Sbjct: 2845 cgcgccgcccaatcgctgggctcg 2868
>dbj|AK125053.1| Homo sapiens cDNA FLJ43063 fis, clone BRTHA3008310, moderately similar to Mus musculus mRNA for iroquois homeobox protein 6 Length = 3123 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 528 ctcccctctcccctcctcct 547
>gb|AY050698.1| Homo sapiens clone WR16 immunoglobulin heavy chain variable region mRNA, partial cds Length = 354 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 ttcaggagcaaaacctccca 336 |||||||||||||||||||| Sbjct: 162 ttcaggagcaaaacctccca 143
>gb|AC109462.2| Homo sapiens chromosome 16 clone RP11-26L20, complete sequence Length = 174191 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 141210 ctcccctctcccctcctcct 141229
>gb|AC015724.9| Homo sapiens chromosome 17, clone RP11-45J24, complete sequence Length = 189055 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctctcccctcctcctctcgc 25 |||||||||||||||||||| Sbjct: 61932 ctctcccctcctcctctcgc 61951
>gb|AC098839.3| Genomic sequence for Mus musculus, clone RP23-469C2, complete sequence Length = 192470 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 cccctctcccctcctcctct 22 |||||||||||||||||||| Sbjct: 126058 cccctctcccctcctcctct 126039
>ref|XM_679073.1| PREDICTED: Danio rerio similar to Transducin (beta)-like 2 (LOC556305), mRNA Length = 1475 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 catgctgaagaaagcctcaa 311 |||||||||||||||||||| Sbjct: 1299 catgctgaagaaagcctcaa 1318
>gb|AC101979.13| Mus musculus chromosome 3, clone RP24-338A7, complete sequence Length = 161025 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tcccctctcccctcctcctc 21 |||||||||||||||||||| Sbjct: 5648 tcccctctcccctcctcctc 5629
>gb|AC153869.7| Mus musculus 6 BAC RP23-386A17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 222826 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 56412 ctcccctctcccctcctcct 56393
>dbj|AK039341.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330027G23 product:histocompatibility 2, T region locus 18, full insert sequence Length = 3197 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ccctctcccctcctcctctc 23 |||||||||||||||||||| Sbjct: 1034 ccctctcccctcctcctctc 1053
>gb|AC009165.6|AC009165 Homo sapiens chromosome 16 clone RP11-7O2, complete sequence Length = 152225 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 91979 ctcccctctcccctcctcct 91998
>dbj|AK047649.1| Mus musculus adult male corpus striatum cDNA, RIKEN full-length enriched library, clone:C030004M06 product:hypothetical Zn-dependent exopeptidases structure containing protein, full insert sequence Length = 3265 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 3191 ctcccctctcccctcctcct 3172
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tcccctctcccctcctcctc 21 |||||||||||||||||||| Sbjct: 7867777 tcccctctcccctcctcctc 7867796
>gb|AC154876.7| Mus musculus chromosome 3, clone RP23-190D19, complete sequence Length = 196840 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 tcccctctcccctcctcctc 21 |||||||||||||||||||| Sbjct: 185693 tcccctctcccctcctcctc 185674
>gb|AC092722.5| Homo sapiens chromosome 16 clone RP11-517M14, complete sequence Length = 189822 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 91648 ctcccctctcccctcctcct 91629
>ref|NM_212767.1| Danio rerio transducin (beta)-like 2 (tbl2), mRNA Length = 1739 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 catgctgaagaaagcctcaa 311 |||||||||||||||||||| Sbjct: 1530 catgctgaagaaagcctcaa 1549
>gb|AC007595.9| Homo sapiens chromosome 16 clone RP11-109M19, complete sequence Length = 186303 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 50969 ctcccctctcccctcctcct 50950
>emb|BX088525.4| Zebrafish DNA sequence from clone DKEYP-51F8 in linkage group 10, complete sequence Length = 212133 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 catgctgaagaaagcctcaa 311 |||||||||||||||||||| Sbjct: 206142 catgctgaagaaagcctcaa 206161
>gb|AC153627.2| Mus musculus 6 BAC RP23-104H13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198060 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ctcccctctcccctcctcct 20 |||||||||||||||||||| Sbjct: 24451 ctcccctctcccctcctcct 24470
>gb|AC005553.1|AC005553 Homo sapiens chromosome 17, clone hRPK.112_J_9, complete sequence Length = 179651 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 ctctcccctcctcctctcgc 25 |||||||||||||||||||| Sbjct: 146555 ctctcccctcctcctctcgc 146574
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tcccctctcccctcctcctc 21 |||||||||||||||||||| Sbjct: 7937864 tcccctctcccctcctcctc 7937883
>emb|AL929565.16| Mouse DNA sequence from clone RP23-454N16 on chromosome 4, complete sequence Length = 120515 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ccctctcccctcctcctctc 23 |||||||||||||||||||| Sbjct: 4404 ccctctcccctcctcctctc 4423
>gb|AC130535.4| Mus musculus BAC clone RP23-326O2 from 5, complete sequence Length = 193752 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 ccctctcccctcctcctctc 23 |||||||||||||||||||| Sbjct: 192903 ccctctcccctcctcctctc 192922
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 gagctcccgcgccgcccaat 75 |||||||||||||||||||| Sbjct: 714124 gagctcccgcgccgcccaat 714105
>gb|U31202.1|HSU31202 Human noggin (NOGGIN) gene, complete cds Length = 1557 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 ctctcccctcctcctctcgc 25 |||||||||||||||||||| Sbjct: 459 ctctcccctcctcctctcgc 440
>emb|AL732525.13| Mouse DNA sequence from clone RP23-358I10 on chromosome 2, complete sequence Length = 220495 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 ccctctcccctcctcctctc 23 |||||||||||||||||||| Sbjct: 89144 ccctctcccctcctcctctc 89125 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,940,090 Number of Sequences: 3902068 Number of extensions: 3940090 Number of successful extensions: 91952 Number of sequences better than 10.0: 89 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91479 Number of HSP's gapped (non-prelim): 473 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
