ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17a11 |
|---|---|
| Clone Library Name | barley_pub |
>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL| receptor) (Scavenger receptor class F member 1) Length = 830 Score = 33.1 bits (74), Expect = 0.20 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Frame = +1 Query: 58 PSSVSRGNQST---RRRHRLCGPSATACRRPSPASTSPGQAATSCRSPAYGLR 207 P +SRG QS R GP PA+ SPG +AT R P G R Sbjct: 616 PKRLSRGAQSGPEGREAEESTGPDEAEAPESFPAAASPGDSATGHRRPPLGSR 668
>AATC_RHIME (O87320) Putative aminotransferase aatC (EC 2.6.1.-)| Length = 405 Score = 32.0 bits (71), Expect = 0.45 Identities = 17/50 (34%), Positives = 27/50 (54%) Frame = +3 Query: 48 SGGAIVRFSGEPKHAASAPPVRPIRHGVPPPISRVYISWSSGNLLQVACL 197 +GG I S EP + P R +RH +P P++ + +++ S QVA L Sbjct: 136 AGGVIRSISVEPDESFFPPLERAVRHSIPKPLALI-LNYPSNPTAQVATL 184
>LYOX_BOVIN (P33072) Protein-lysine 6-oxidase precursor (EC 1.4.3.13) (Lysyl| oxidase) Length = 418 Score = 31.6 bits (70), Expect = 0.59 Identities = 18/46 (39%), Positives = 22/46 (47%) Frame = +1 Query: 43 PTAGAPSSVSRGNQSTRRRHRLCGPSATACRRPSPASTSPGQAATS 180 P P + R N++ R R GPSA A RP PA+ QA S Sbjct: 84 PQMRTPILLLRNNRTAAARVRTAGPSAAAAGRPRPAARHWFQAGYS 129
>NEK8_MOUSE (Q91ZR4) Serine/threonine-protein kinase Nek8 (EC 2.7.11.1) (Never| in mitosis A-related kinase 8) (NimA-related protein kinase 8) Length = 698 Score = 30.8 bits (68), Expect = 1.0 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = +3 Query: 30 PGMPADSGGAIVRFSGEPKHAASAPPVRPIRHGVPPPISRVYISWSSG 173 PG P SG R + PVRP +PPP+S VY +W G Sbjct: 283 PGPPIASGSTGSRATSARCRGVPRGPVRP---AIPPPLSSVY-AWGGG 326
>KS6A4_HUMAN (O75676) Ribosomal protein S6 kinase alpha-4 (EC 2.7.11.1) (Nuclear| mitogen-and stress-activated protein kinase 2) (90 kDa ribosomal protein S6 kinase 4) (Ribosomal protein kinase B) (RSKB) Length = 772 Score = 29.6 bits (65), Expect = 2.2 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = +1 Query: 64 SVSRGNQSTRRRHRLCGPSATACRRPSPASTSPGQAATSCR 186 SV + RR+ +L SATA RR SPA +PG+A + + Sbjct: 721 SVENAPLAKRRKQKL--RSATASRRGSPAPANPGRAPVASK 759
>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;| Membrane glycoprotein E2; Membrane glycoprotein E1] Length = 992 Score = 29.6 bits (65), Expect = 2.2 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = +1 Query: 127 ACRRPSPASTSPGQAATSCRSPAYG 201 ACRRP+P SP + PAYG Sbjct: 556 ACRRPAPPPPSPQSSCRGTTPPAYG 580
>BRCA1_RAT (O54952) Breast cancer type 1 susceptibility protein homolog| Length = 1817 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 3/31 (9%) Frame = +1 Query: 118 SATACRRPSPAST---SPGQAATSCRSPAYG 201 SA C P+ S S GQ A SCRSPA G Sbjct: 1538 SALVCTAPASTSALKISQGQVAGSCRSPAAG 1568
>KR134_MACFU (Q4W7G8) Keratin-associated protein 13-4| Length = 156 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +1 Query: 91 RRRHRLCGPSATACRRPSPASTSPGQAATSCRSPAYGLR 207 RR LC P T C R S G ++SC S YG R Sbjct: 64 RRTSMLCSPCQTTCSR------SLGFGSSSCHSQGYGSR 96
>KR134_MACFA (Q4W7G9) Keratin-associated protein 13-4| Length = 156 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +1 Query: 91 RRRHRLCGPSATACRRPSPASTSPGQAATSCRSPAYGLR 207 RR LC P T C R S G ++SC S YG R Sbjct: 64 RRTSMLCSPCQTTCSR------SLGFGSSSCHSQGYGSR 96
>KR134_CEBAP (Q4W7G7) Keratin-associated protein 13-4| Length = 156 Score = 29.3 bits (64), Expect = 2.9 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +1 Query: 91 RRRHRLCGPSATACRRPSPASTSPGQAATSCRSPAYGLR 207 RR LC P T C R S G ++SC S YG R Sbjct: 64 RRTSMLCSPCQTTCSR------SLGFGSSSCHSQGYGSR 96
>R51A1_MOUSE (Q8C551) RAD51-associated protein 1 (RAD51-interacting protein)| (RAB22) Length = 337 Score = 28.5 bits (62), Expect = 5.0 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 9/60 (15%) Frame = +1 Query: 58 PSSVSRGNQSTRRRHRLCGPSATACRRP---------SPASTSPGQAATSCRSPAYGLRI 210 P +V +++TR+ +C PSA + +RP S S+S A T +SP+ LR+ Sbjct: 258 PQAVGLPSEATRKPAIMCSPSAES-KRPKWVPPAASGSRNSSSNALAGTPAKSPSQSLRL 316
>NEK8_HUMAN (Q86SG6) Serine/threonine-protein kinase Nek8 (EC 2.7.11.1) (Never| in mitosis A-related kinase 8) (NimA-related protein kinase 8) (NIMA-related kinase 12a) Length = 692 Score = 28.1 bits (61), Expect = 6.5 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 105 PVRPIRHGVPPPISRVYISWSSG 173 P P+R +PPP+S VY +W G Sbjct: 299 PRGPVRPAIPPPLSSVY-AWGGG 320
>MEF2D_HUMAN (Q14814) Myocyte-specific enhancer factor 2D| Length = 521 Score = 28.1 bits (61), Expect = 6.5 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +3 Query: 6 PSSCSLAMPGMPADSGGAIVRFSGEPKHAASAPPVRPIRHGVPPP 140 P S S +PG P GA + + P + + PV P R P P Sbjct: 409 PVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAP 453
>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor| Length = 323 Score = 28.1 bits (61), Expect = 6.5 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%) Frame = +1 Query: 52 GAPSSVSRGNQSTRRRHRLCGPS-ATACRRPSPASTSPGQA 171 GAP + + + +R H L GPS A + PS A PGQ+ Sbjct: 186 GAPGNPGQAGRGGQRSHGLPGPSGAPGPQGPSGAPGQPGQS 226
>MEF2D_MOUSE (Q63943) Myocyte-specific enhancer factor 2D| Length = 514 Score = 28.1 bits (61), Expect = 6.5 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +3 Query: 6 PSSCSLAMPGMPADSGGAIVRFSGEPKHAASAPPVRPIRHGVPPP 140 P S S +PG P GA + + P + + PV P R P P Sbjct: 402 PVSLSNLIPGSPLPHVGAALTVTTHPHISIKSEPVSPSRERSPAP 446
>APAH_XANAC (Q8PP27) Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC| 3.6.1.41) (Diadenosine tetraphosphatase) (Ap4A hydrolase) (Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase) Length = 314 Score = 28.1 bits (61), Expect = 6.5 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +1 Query: 43 PTAGAPSSVSRGNQSTRRRHRLCGPSATACRRPSPASTSP 162 P P + R Q RR+ + G A P+PAST P Sbjct: 272 PITHPPKTAQRPRQPRRRQRQRGGDQAQTGPAPTPASTGP 311
>VT2_SFVKA (P25943) Tumor necrosis factor soluble receptor precursor (Protein| T2) Length = 325 Score = 27.7 bits (60), Expect = 8.5 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 5/38 (13%) Frame = +1 Query: 103 RLCGPSATACRRPSP-----ASTSPGQAATSCRSPAYG 201 RLCGP + P AST+ A SCR P G Sbjct: 51 RLCGPGSNTVCSPCEDGTFTASTNHAPACVSCRGPCTG 88
>CCHL_NEUCR (P14187) Cytochrome c heme lyase (EC 4.4.1.17) (CCHL)| (Holocytochrome-C synthase) Length = 346 Score = 27.7 bits (60), Expect = 8.5 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +3 Query: 6 PSSCSLAMPGMPADSGGAIVRFSGEPKHAASAPPVRPIRHG 128 P SC + M A S V + EP AA+AP P+ HG Sbjct: 32 PPSCPMHNKTMDALSAHKPVTPAPEPTPAAAAPSKCPVNHG 72
>KR131_HUMAN (Q8IUC0) Keratin-associated protein 13-1 (High sulfur| keratin-associated protein 13.1) Length = 172 Score = 27.7 bits (60), Expect = 8.5 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 17/66 (25%) Frame = +1 Query: 61 SSVSRGNQSTRRRHRLC-------GPSATACRRP------SPAST----SPGQAATSCRS 189 SS+ RG Q T C P T+C RP SP T S G ++SCRS Sbjct: 50 SSLYRGCQQTCWEPTSCQTSYVESSPCQTSCYRPRTSLLCSPCQTTYSGSLGFGSSSCRS 109 Query: 190 PAYGLR 207 YG R Sbjct: 110 LGYGSR 115
>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like| protein) Length = 349 Score = 27.7 bits (60), Expect = 8.5 Identities = 15/37 (40%), Positives = 17/37 (45%) Frame = -1 Query: 139 GGGTPWRMGRTGGADAACFGSPEKRTMAPPLSAGMPG 29 G TP M GGA + SP T +PP S PG Sbjct: 146 GSSTPGSMTPPGGAHSPKSSSPVSPTTSPPGSTTPPG 182
>PROS_DROME (P29617) Protein prospero| Length = 1403 Score = 27.7 bits (60), Expect = 8.5 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +1 Query: 58 PSSVSRGNQSTRRRHRLCGPSATACRRPSPASTSPGQAATSCRS 189 P SVS N S+ + P+A A SP S SP A+S S Sbjct: 20 PQSVSTANSSSSNNNNSSTPAALATH--SPTSNSPVSGASSASS 61
>BARH1_DROAN (P22544) Homeobox protein B-H1 (Homeobox BarH1 protein)| Length = 606 Score = 27.7 bits (60), Expect = 8.5 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%) Frame = +3 Query: 6 PSSCSLAMPGMPADSGGAIVRFSGEPKHAASAPPVRPIR-HGVPPPI 143 PSS + A G P+ GG I +G P PP P R PP+ Sbjct: 521 PSSAAAATGGSPSPIGGLIKPLAGSP--TGGMPPHHPSRPDSASPPL 565
>ATS16_MOUSE (Q69Z28) ADAMTS-16 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 16) (ADAM-TS 16) (ADAM-TS16) Length = 1222 Score = 27.7 bits (60), Expect = 8.5 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Frame = +3 Query: 9 SSCSLAMPGMPADSGGAIVRFSGEPKHAASA-PPVRPIRHGVPPPISRVYISWSSGN 176 S CS++ G +S R P +A+ P RP+ VP +S SWS GN Sbjct: 877 SECSVSCGGGKMNSKAGCYRDLKVPVNASFCNPKTRPVTGLVPCKVSPCPSSWSVGN 933
>CHRD_HUMAN (Q9H2X0) Chordin precursor| Length = 955 Score = 27.7 bits (60), Expect = 8.5 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = -1 Query: 145 EMGGGTPWRMGRTGGADAACFGSPEKRTMAPPLSAGMPGIA 23 E+GG R+ G G+P+ + APP+ G+P +A Sbjct: 652 EVGG---LRLEAAGAEGVRALGAPDTASAAPPVVPGLPALA 689 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.123 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,541,964 Number of Sequences: 219361 Number of extensions: 591569 Number of successful extensions: 2119 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1910 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2111 length of database: 80,573,946 effective HSP length: 45 effective length of database: 70,702,701 effective search space used: 1696864824 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
