>ref|NM_191185.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2202

 Score =  113 bits (57), Expect = 2e-22
 Identities = 128/151 (84%), Gaps = 3/151 (1%)
 Strand = Plus / Plus

                                                                       
Query: 49  gcgggggcgccatcgtccgtttctcgggggaaccaaagcacgc---ggcgtcggcaccgc 105
           |||| ||||||||||| |  |||||||| ||||||   |||||   |||| |||| ||||
Sbjct: 23  gcggcggcgccatcgtgccgttctcgggagaaccaggccacgcggtggcggcggccccgc 82

                                                                       
Query: 106 ctgtgcggcccatccgccacggcgtgccgccgcccatctcccgcgtctacatctcctggt 165
           | ||||||  |||||||||||||||| | ||||||||||||||||||||| | ||||  |
Sbjct: 83  ccgtgcggaacatccgccacggcgtggccccgcccatctcccgcgtctacgtttcctttt 142

                                          
Query: 166 caagcggcaacctcctgcaggtcgcctgcct 196
           | |||||||||||||||||||||||||||||
Sbjct: 143 ctagcggcaacctcctgcaggtcgcctgcct 173

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  113 bits (57), Expect = 2e-22
 Identities = 128/151 (84%), Gaps = 3/151 (1%)
 Strand = Plus / Plus

                                                                            
Query: 49       gcgggggcgccatcgtccgtttctcgggggaaccaaagcacgc---ggcgtcggcaccgc 105
                |||| ||||||||||| |  |||||||| ||||||   |||||   |||| |||| ||||
Sbjct: 31196847 gcggcggcgccatcgtgccgttctcgggagaaccaggccacgcggtggcggcggccccgc 31196906

                                                                            
Query: 106      ctgtgcggcccatccgccacggcgtgccgccgcccatctcccgcgtctacatctcctggt 165
                | ||||||  |||||||||||||||| | ||||||||||||||||||||| | ||||  |
Sbjct: 31196907 ccgtgcggaacatccgccacggcgtggccccgcccatctcccgcgtctacgtttcctttt 31196966

                                               
Query: 166      caagcggcaacctcctgcaggtcgcctgcct 196
                | |||||||||||||||||||||||||||||
Sbjct: 31196967 ctagcggcaacctcctgcaggtcgcctgcct 31196997

>dbj|AP003376.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0014K08
          Length = 177263

 Score =  113 bits (57), Expect = 2e-22
 Identities = 128/151 (84%), Gaps = 3/151 (1%)
 Strand = Plus / Plus

                                                                          
Query: 49     gcgggggcgccatcgtccgtttctcgggggaaccaaagcacgc---ggcgtcggcaccgc 105
              |||| ||||||||||| |  |||||||| ||||||   |||||   |||| |||| ||||
Sbjct: 123192 gcggcggcgccatcgtgccgttctcgggagaaccaggccacgcggtggcggcggccccgc 123251

                                                                          
Query: 106    ctgtgcggcccatccgccacggcgtgccgccgcccatctcccgcgtctacatctcctggt 165
              | ||||||  |||||||||||||||| | ||||||||||||||||||||| | ||||  |
Sbjct: 123252 ccgtgcggaacatccgccacggcgtggccccgcccatctcccgcgtctacgtttcctttt 123311

                                             
Query: 166    caagcggcaacctcctgcaggtcgcctgcct 196
              | |||||||||||||||||||||||||||||
Sbjct: 123312 ctagcggcaacctcctgcaggtcgcctgcct 123342

>dbj|AK072636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133F04, full
           insert sequence
          Length = 2628

 Score = 97.6 bits (49), Expect = 1e-17
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                       
Query: 116 catccgccacggcgtgccgccgcccatctcccgcgtctacatctcctggtcaagcggcaa 175
           |||||||||||||||| | |||||||||| |||||||||| | ||||  || ||||||||
Sbjct: 219 catccgccacggcgtggccccgcccatctgccgcgtctacgtttccttttctagcggcaa 278

                                
Query: 176 cctcctgcaggtcgcctgcct 196
           |||||||||||||||||||||
Sbjct: 279 cctcctgcaggtcgcctgcct 299

>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0053E05, complete sequence
          Length = 196284

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 113   gcccatccgccacggcgtgccgccgcc 139
             ||||||||||||| |||||||||||||
Sbjct: 41968 gcccatccgccaccgcgtgccgccgcc 41994

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 113      gcccatccgccacggcgtgccgccgcc 139
                ||||||||||||| |||||||||||||
Sbjct: 26190920 gcccatccgccaccgcgtgccgccgcc 26190946

>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
            complete sequence
          Length = 99176

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 159  tcctggtcaagcggcaacctcctgc 183
            ||||| |||||||||||||||||||
Sbjct: 7041 tcctgatcaagcggcaacctcctgc 7065

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 19      cgctggcgatgccgggcatg 38
               ||||||||||||||||||||
Sbjct: 2664810 cgctggcgatgccgggcatg 2664791

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 25      cgatgccgggcatgccggcc 44
               ||||||||||||||||||||
Sbjct: 1897957 cgatgccgggcatgccggcc 1897976

>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 19      cgctggcgatgccgggcatg 38
               ||||||||||||||||||||
Sbjct: 1927349 cgctggcgatgccgggcatg 1927330

>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 108     gtgcggcccatccgccacggcgtg 131
               ||||||||||| ||||||||||||
Sbjct: 2124358 gtgcggcccatgcgccacggcgtg 2124335

>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     tgccgggcatgccggccgac 47
              ||||||||||||||||||||
Sbjct: 167793 tgccgggcatgccggccgac 167774

>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     tgccgggcatgccggccgac 47
              ||||||||||||||||||||
Sbjct: 104229 tgccgggcatgccggccgac 104210

>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12
          Length = 349726

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     tgccgggcatgccggccgac 47
              ||||||||||||||||||||
Sbjct: 323463 tgccgggcatgccggccgac 323482

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 25      cgatgccgggcatgccggcc 44
               ||||||||||||||||||||
Sbjct: 5076698 cgatgccgggcatgccggcc 5076679

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 124     acggcgtgccgccgcccatc 143
               ||||||||||||||||||||
Sbjct: 1624133 acggcgtgccgccgcccatc 1624152



 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     cgctggcgatgccgggcatg 38
              ||||||||||||||||||||
Sbjct: 714477 cgctggcgatgccgggcatg 714496

>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 31      cgggcatgccggccgacagc 50
               ||||||||||||||||||||
Sbjct: 2845936 cgggcatgccggccgacagc 2845955

>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    tggcgatgccgggcatgccg 41
             ||||||||||||||||||||
Sbjct: 57638 tggcgatgccgggcatgccg 57619


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,081,143
Number of Sequences: 3902068
Number of extensions: 1081143
Number of successful extensions: 80765
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79681
Number of HSP's gapped (non-prelim): 1084
length of query: 211
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 189
effective length of database: 17,147,199,772
effective search space: 3240820756908
effective search space used: 3240820756908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)