Clone Name | bastl17a05 |
---|---|
Clone Library Name | barley_pub |
>dbj|AB109215.1| Hordeum vulgare BRI1 gene for putative brassinosteroid-insensitive 1, complete cds, cultivar:Akashinriki Length = 3558 Score = 519 bits (262), Expect = e-144 Identities = 262/262 (100%) Strand = Plus / Plus Query: 179 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 167 Query: 239 aggctggaccgcgcgggagggcgcctgcaggttccccggcgcggtgtgccggggcgggcg 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 168 aggctggaccgcgcgggagggcgcctgcaggttccccggcgcggtgtgccggggcgggcg 227 Query: 299 gctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgccaa 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 228 gctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgccaa 287 Query: 359 caccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcgg 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 288 caccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcgg 347 Query: 419 cgcgctcgcggccgccaggtgc 440 |||||||||||||||||||||| Sbjct: 348 cgcgctcgcggccgccaggtgc 369 Score = 115 bits (58), Expect = 1e-22 Identities = 58/58 (100%) Strand = Plus / Plus Query: 72 cgcttctcgcatggtctcaaggtagagcgagcgagctcccacatggattgcctgcggc 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cgcttctcgcatggtctcaaggtagagcgagcgagctcccacatggattgcctgcggc 58
>dbj|AB109214.1| Hordeum vulgare subsp. spontaneum BRI1 gene for putative brassinosteroid-insensitive 1, complete cds, strain:H602 Length = 3558 Score = 519 bits (262), Expect = e-144 Identities = 262/262 (100%) Strand = Plus / Plus Query: 179 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 167 Query: 239 aggctggaccgcgcgggagggcgcctgcaggttccccggcgcggtgtgccggggcgggcg 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 168 aggctggaccgcgcgggagggcgcctgcaggttccccggcgcggtgtgccggggcgggcg 227 Query: 299 gctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgccaa 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 228 gctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgccaa 287 Query: 359 caccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcgg 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 288 caccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcgg 347 Query: 419 cgcgctcgcggccgccaggtgc 440 |||||||||||||||||||||| Sbjct: 348 cgcgctcgcggccgccaggtgc 369 Score = 115 bits (58), Expect = 1e-22 Identities = 58/58 (100%) Strand = Plus / Plus Query: 72 cgcttctcgcatggtctcaaggtagagcgagcgagctcccacatggattgcctgcggc 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cgcttctcgcatggtctcaaggtagagcgagcgagctcccacatggattgcctgcggc 58
>dbj|AB109213.1| Hordeum vulgare BRI1 gene for putative brassinosteroid-insensitive 1, complete cds, cultivar:Haruna Nijo Length = 3558 Score = 519 bits (262), Expect = e-144 Identities = 262/262 (100%) Strand = Plus / Plus Query: 179 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 167 Query: 239 aggctggaccgcgcgggagggcgcctgcaggttccccggcgcggtgtgccggggcgggcg 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 168 aggctggaccgcgcgggagggcgcctgcaggttccccggcgcggtgtgccggggcgggcg 227 Query: 299 gctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgccaa 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 228 gctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgccaa 287 Query: 359 caccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcgg 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 288 caccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcgg 347 Query: 419 cgcgctcgcggccgccaggtgc 440 |||||||||||||||||||||| Sbjct: 348 cgcgctcgcggccgccaggtgc 369 Score = 115 bits (58), Expect = 1e-22 Identities = 58/58 (100%) Strand = Plus / Plus Query: 72 cgcttctcgcatggtctcaaggtagagcgagcgagctcccacatggattgcctgcggc 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cgcttctcgcatggtctcaaggtagagcgagcgagctcccacatggattgcctgcggc 58
>dbj|AB088206.1| Hordeum vulgare BRI1 mRNA for putative brassinosteroid-insensitive protein 1, complete cds Length = 3558 Score = 519 bits (262), Expect = e-144 Identities = 262/262 (100%) Strand = Plus / Plus Query: 179 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 167 Query: 239 aggctggaccgcgcgggagggcgcctgcaggttccccggcgcggtgtgccggggcgggcg 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 168 aggctggaccgcgcgggagggcgcctgcaggttccccggcgcggtgtgccggggcgggcg 227 Query: 299 gctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgccaa 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 228 gctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgccaa 287 Query: 359 caccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcgg 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 288 caccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcgg 347 Query: 419 cgcgctcgcggccgccaggtgc 440 |||||||||||||||||||||| Sbjct: 348 cgcgctcgcggccgccaggtgc 369 Score = 115 bits (58), Expect = 1e-22 Identities = 58/58 (100%) Strand = Plus / Plus Query: 72 cgcttctcgcatggtctcaaggtagagcgagcgagctcccacatggattgcctgcggc 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cgcttctcgcatggtctcaaggtagagcgagcgagctcccacatggattgcctgcggc 58
>ref|NM_191780.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3366 Score = 168 bits (85), Expect = 1e-38 Identities = 213/253 (84%), Gaps = 2/253 (0%) Strand = Plus / Plus Query: 179 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 238 ||||||||| |||||||| || ||||||||| |||| |||| | ||||||| ||||| | Sbjct: 75 cgacgacgcccagctgctcgaggagttcaggcaggcggtgccgaaccaggcggcgctcaa 134 Query: 239 aggctggaccgcgcgg-gagggcgcctgcaggttccccggcgcggtgtgccggggcgggc 297 || |||| || |||| || ||||| ||||||||||| || || | ||||||| |||| Sbjct: 135 ggggtggagcg-gcggcgacggcgcgtgcaggttcccgggggccgggtgccggaacggga 193 Query: 298 ggctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgcca 357 ||||||||||||| |||||||||| ||| ||||||||||||| |||||||||||||| Sbjct: 194 ggctcacgtcgctgtcgctcgccggcgtgccgctcaatgccgagttccgcgccgtcgcgg 253 Query: 358 acaccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcg 417 |||||||||||||||| || ||||||| ||| ||||| ||||||||||||||||||| Sbjct: 254 ccaccctgctgcagctcggcagcgtcgaggtgctgagcctccgcggcgccaacgtcagcg 313 Query: 418 gcgcgctcgcggc 430 |||||||| |||| Sbjct: 314 gcgcgctctcggc 326
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 168 bits (85), Expect = 1e-38 Identities = 213/253 (84%), Gaps = 2/253 (0%) Strand = Plus / Minus Query: 179 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 238 ||||||||| |||||||| || ||||||||| |||| |||| | ||||||| ||||| | Sbjct: 29924515 cgacgacgcccagctgctcgaggagttcaggcaggcggtgccgaaccaggcggcgctcaa 29924456 Query: 239 aggctggaccgcgcgg-gagggcgcctgcaggttccccggcgcggtgtgccggggcgggc 297 || |||| || |||| || ||||| ||||||||||| || || | ||||||| |||| Sbjct: 29924455 ggggtggagcg-gcggcgacggcgcgtgcaggttcccgggggccgggtgccggaacggga 29924397 Query: 298 ggctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgcca 357 ||||||||||||| |||||||||| ||| ||||||||||||| |||||||||||||| Sbjct: 29924396 ggctcacgtcgctgtcgctcgccggcgtgccgctcaatgccgagttccgcgccgtcgcgg 29924337 Query: 358 acaccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcg 417 |||||||||||||||| || ||||||| ||| ||||| ||||||||||||||||||| Sbjct: 29924336 ccaccctgctgcagctcggcagcgtcgaggtgctgagcctccgcggcgccaacgtcagcg 29924277 Query: 418 gcgcgctcgcggc 430 |||||||| |||| Sbjct: 29924276 gcgcgctctcggc 29924264
>dbj|AP003453.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0480C01 Length = 151100 Score = 168 bits (85), Expect = 1e-38 Identities = 213/253 (84%), Gaps = 2/253 (0%) Strand = Plus / Minus Query: 179 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 238 ||||||||| |||||||| || ||||||||| |||| |||| | ||||||| ||||| | Sbjct: 69073 cgacgacgcccagctgctcgaggagttcaggcaggcggtgccgaaccaggcggcgctcaa 69014 Query: 239 aggctggaccgcgcgg-gagggcgcctgcaggttccccggcgcggtgtgccggggcgggc 297 || |||| || |||| || ||||| ||||||||||| || || | ||||||| |||| Sbjct: 69013 ggggtggagcg-gcggcgacggcgcgtgcaggttcccgggggccgggtgccggaacggga 68955 Query: 298 ggctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgcca 357 ||||||||||||| |||||||||| ||| ||||||||||||| |||||||||||||| Sbjct: 68954 ggctcacgtcgctgtcgctcgccggcgtgccgctcaatgccgagttccgcgccgtcgcgg 68895 Query: 358 acaccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcg 417 |||||||||||||||| || ||||||| ||| ||||| ||||||||||||||||||| Sbjct: 68894 ccaccctgctgcagctcggcagcgtcgaggtgctgagcctccgcggcgccaacgtcagcg 68835 Query: 418 gcgcgctcgcggc 430 |||||||| |||| Sbjct: 68834 gcgcgctctcggc 68822
>dbj|AK101085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024I12, full insert sequence Length = 3858 Score = 168 bits (85), Expect = 1e-38 Identities = 213/253 (84%), Gaps = 2/253 (0%) Strand = Plus / Plus Query: 179 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 238 ||||||||| |||||||| || ||||||||| |||| |||| | ||||||| ||||| | Sbjct: 196 cgacgacgcccagctgctcgaggagttcaggcaggcggtgccgaaccaggcggcgctcaa 255 Query: 239 aggctggaccgcgcgg-gagggcgcctgcaggttccccggcgcggtgtgccggggcgggc 297 || |||| || |||| || ||||| ||||||||||| || || | ||||||| |||| Sbjct: 256 ggggtggagcg-gcggcgacggcgcgtgcaggttcccgggggccgggtgccggaacggga 314 Query: 298 ggctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgcca 357 ||||||||||||| |||||||||| ||| ||||||||||||| |||||||||||||| Sbjct: 315 ggctcacgtcgctgtcgctcgccggcgtgccgctcaatgccgagttccgcgccgtcgcgg 374 Query: 358 acaccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcg 417 |||||||||||||||| || ||||||| ||| ||||| ||||||||||||||||||| Sbjct: 375 ccaccctgctgcagctcggcagcgtcgaggtgctgagcctccgcggcgccaacgtcagcg 434 Query: 418 gcgcgctcgcggc 430 |||||||| |||| Sbjct: 435 gcgcgctctcggc 447
>dbj|AK073838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069J12, full insert sequence Length = 3783 Score = 168 bits (85), Expect = 1e-38 Identities = 213/253 (84%), Gaps = 2/253 (0%) Strand = Plus / Plus Query: 179 cgacgacgcgcagctgctggacgagttcaggatggcgctgcccagccaggcgccgctcga 238 ||||||||| |||||||| || ||||||||| |||| |||| | ||||||| ||||| | Sbjct: 153 cgacgacgcccagctgctcgaggagttcaggcaggcggtgccgaaccaggcggcgctcaa 212 Query: 239 aggctggaccgcgcgg-gagggcgcctgcaggttccccggcgcggtgtgccggggcgggc 297 || |||| || |||| || ||||| ||||||||||| || || | ||||||| |||| Sbjct: 213 ggggtggagcg-gcggcgacggcgcgtgcaggttcccgggggccgggtgccggaacggga 271 Query: 298 ggctcacgtcgctctcgctcgccgccgtcacgctcaatgccgacttccgcgccgtcgcca 357 ||||||||||||| |||||||||| ||| ||||||||||||| |||||||||||||| Sbjct: 272 ggctcacgtcgctgtcgctcgccggcgtgccgctcaatgccgagttccgcgccgtcgcgg 331 Query: 358 acaccctgctgcagctcagcgccgtcgagcggctcagcctgcgcggcgccaacgtcagcg 417 |||||||||||||||| || ||||||| ||| ||||| ||||||||||||||||||| Sbjct: 332 ccaccctgctgcagctcggcagcgtcgaggtgctgagcctccgcggcgccaacgtcagcg 391 Query: 418 gcgcgctcgcggc 430 |||||||| |||| Sbjct: 392 gcgcgctctcggc 404
>emb|X51513.1|RTPAL2 Rhodosporidium toruloides pal gene for phenylalanine ammonia-lyase (EC 4.3.1.5) Length = 3340 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 303 acgtcgctctcgctcgccgccgtca 327 ||||||||||||||||||||||||| Sbjct: 2744 acgtcgctctcgctcgccgccgtca 2768
>emb|X12702.1|RTPALGNA R.toruloides mRNA for L-phenylalanine ammonia-lyase (PAL) Length = 2315 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 303 acgtcgctctcgctcgccgccgtca 327 ||||||||||||||||||||||||| Sbjct: 1843 acgtcgctctcgctcgccgccgtca 1867
>gb|M18261.1|RHDPAL R. toruloides pal gene encoding phenylalanine amonia-lyase, complete cds Length = 2986 Score = 50.1 bits (25), Expect = 0.006 Identities = 25/25 (100%) Strand = Plus / Plus Query: 303 acgtcgctctcgctcgccgccgtca 327 ||||||||||||||||||||||||| Sbjct: 2512 acgtcgctctcgctcgccgccgtca 2536
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 371 gctcagcgccgtcgagcggctc 392 |||||||||||||||||||||| Sbjct: 3057610 gctcagcgccgtcgagcggctc 3057631
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 406 ccaacgtcagcggcgcgctcgcggc 430 |||||||||||||||||||| |||| Sbjct: 3335476 ccaacgtcagcggcgcgctctcggc 3335452
>ref|XM_883492.1| Leishmania major strain Friedlin hypothetical protein (L4830.05) partial mRNA Length = 3234 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 385 agcggctcagcctgcgcggcg 405 ||||||||||||||||||||| Sbjct: 178 agcggctcagcctgcgcggcg 198
>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end Length = 247462 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 agcggctcagcctgcgcggcg 405 ||||||||||||||||||||| Sbjct: 88163 agcggctcagcctgcgcggcg 88143
>gb|AC166566.2| Spironucleus vortens clone JGIBAWF-9N13, complete sequence Length = 39842 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 416 cggcgcgctcgcggccgccag 436 ||||||||||||||||||||| Sbjct: 5418 cggcgcgctcgcggccgccag 5398
>emb|AJ278573.1|SNA278573 Streptomyces natalensis pimaricin biosynthetic gene cluster Length = 84985 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 gccgacttccgcgccgtcgcc 356 ||||||||||||||||||||| Sbjct: 74252 gccgacttccgcgccgtcgcc 74232
>emb|AJ132222.1|SNA132222 Streptomyces natalensis pimS1 gene Length = 20394 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 gccgacttccgcgccgtcgcc 356 ||||||||||||||||||||| Sbjct: 6901 gccgacttccgcgccgtcgcc 6921
>gb|AF016585.1|AF016585 Streptomyces caelestis cytochrome P-450 hydroxylase homolog (nidi) gene, partial cds; polyketide synthase modules 1 through 7 (nidA) genes, complete cds; and N-methyltransferase homolog gene, partial cds Length = 41097 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 336 gccgacttccgcgccgtcgcc 356 ||||||||||||||||||||| Sbjct: 37307 gccgacttccgcgccgtcgcc 37327
>ref|XM_481818.1| Oryza sativa (japonica cultivar-group), mRNA Length = 417 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 cgctctcgctcgccgccgtc 326 |||||||||||||||||||| Sbjct: 206 cgctctcgctcgccgccgtc 225
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 gcggcgcgctcgcggccgcc 434 |||||||||||||||||||| Sbjct: 3438736 gcggcgcgctcgcggccgcc 3438755
>ref|XM_415115.1| PREDICTED: Gallus gallus similar to hypothetical protein MGC7036 (LOC416824), mRNA Length = 882 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cctgctgcagctcagcgccg 381 |||||||||||||||||||| Sbjct: 143 cctgctgcagctcagcgccg 162
>gb|AY585209.1| Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) (FGFR1) gene, complete cds Length = 59574 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 1970 cagcggcgcgctcgcggccg 1951
>gb|AF484556.1| Streptomyces atroolivaceus leinamycin biosynthetic gene cluster, complete sequence Length = 135638 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 gcggcgcgctcgcggccgcc 434 |||||||||||||||||||| Sbjct: 26465 gcggcgcgctcgcggccgcc 26484
>ref|NM_001040235.1| Apis mellifera Dscam family member AbsCAM (Abscam), mRNA Length = 6524 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ccagccaggcgccgctcgaa 239 |||||||||||||||||||| Sbjct: 543 ccagccaggcgccgctcgaa 524
>emb|CR956427.7| Pig DNA sequence from clone CH242-51O7 on chromosome 6, complete sequence Length = 187800 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gccaacaccctgctgcagct 373 |||||||||||||||||||| Sbjct: 189 gccaacaccctgctgcagct 208
>emb|X66945.1|HSNSAMTK H.sapiens N-sam mRNA for fibroblast growth factor receptor Length = 3981 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 191 cagcggcgcgctcgcggccg 172
>ref|XM_846973.1| PREDICTED: Canis familiaris similar to Mitotic spindle assembly checkpoint protein MAD1 (Mitotic arrest deficient-like protein 1) (MAD1-like 1) (Mitotic checkpoint MAD1 protein-homolog) (HsMAD1) (hMAD1) (Tax binding protein-181) (LOC609673), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 gcggtgtgccggggcgggcggctc 302 ||||||| |||||||||||||||| Sbjct: 141 gcggtgtcccggggcgggcggctc 164
>ref|NM_000604.2| Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) (FGFR1), transcript variant 1, mRNA Length = 4049 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 191 cagcggcgcgctcgcggccg 172
>ref|NM_023106.1| Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) (FGFR1), transcript variant 4, mRNA Length = 3786 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 191 cagcggcgcgctcgcggccg 172
>ref|NM_023105.1| Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) (FGFR1), transcript variant 3, mRNA Length = 3782 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 191 cagcggcgcgctcgcggccg 172
>ref|NM_023107.1| Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) (FGFR1), transcript variant 5, mRNA Length = 2590 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 191 cagcggcgcgctcgcggccg 172
>ref|NM_023109.1| Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) (FGFR1), transcript variant 7, mRNA Length = 4066 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 191 cagcggcgcgctcgcggccg 172
>ref|NM_023108.1| Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) (FGFR1), transcript variant 6, mRNA Length = 2583 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 191 cagcggcgcgctcgcggccg 172
>ref|NM_023110.1| Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) (FGFR1), transcript variant 8, mRNA Length = 1552 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 191 cagcggcgcgctcgcggccg 172
>ref|NM_023111.1| Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) (FGFR1), transcript variant 9, mRNA Length = 3938 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 191 cagcggcgcgctcgcggccg 172
>ref|NM_015850.2| Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome) (FGFR1), transcript variant 2, mRNA Length = 4043 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 191 cagcggcgcgctcgcggccg 172
>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 Length = 223670 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 298 ggctcacgtcgctctcgctcgccgccgt 325 ||||||||||||||||| | |||||||| Sbjct: 178474 ggctcacgtcgctctcgttggccgccgt 178501
>emb|AL731594.5|OSJN00234 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032N05, complete sequence Length = 159486 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 cgtcagcggcgcgctcgcgg 429 |||||||||||||||||||| Sbjct: 112750 cgtcagcggcgcgctcgcgg 112769
>gb|BC015035.1| Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome), mRNA (cDNA clone MGC:9228 IMAGE:3911101), complete cds Length = 3913 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 194 cagcggcgcgctcgcggccg 175
>gb|BC018128.1| Homo sapiens fibroblast growth factor receptor 1 (fms-related tyrosine kinase 2, Pfeiffer syndrome), transcript variant 2, mRNA (cDNA clone MGC:9218 IMAGE:3896359), complete cds Length = 4086 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 170 cagcggcgcgctcgcggccg 151
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 368 gcagctcagcgccgtcgagc 387 |||||||||||||||||||| Sbjct: 2373915 gcagctcagcgccgtcgagc 2373934
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cgacgacgcgcagctgctgg 198 |||||||||||||||||||| Sbjct: 2202 cgacgacgcgcagctgctgg 2183
>emb|BX932368.2| Gallus gallus finished cDNA, clone ChEST97n8 Length = 884 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cctgctgcagctcagcgccg 381 |||||||||||||||||||| Sbjct: 143 cctgctgcagctcagcgccg 162
>ref|XM_393308.2| PREDICTED: Apis mellifera similar to CG32387-PB, isoform B (LOC409817), mRNA Length = 6105 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ccagccaggcgccgctcgaa 239 |||||||||||||||||||| Sbjct: 136 ccagccaggcgccgctcgaa 117
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 cgtcagcggcgcgctcgcgg 429 |||||||||||||||||||| Sbjct: 4124004 cgtcagcggcgcgctcgcgg 4123985
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 cgtcagcggcgcgctcgcgg 429 |||||||||||||||||||| Sbjct: 9835855 cgtcagcggcgcgctcgcgg 9835874
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cgctctcgctcgccgccgtc 326 |||||||||||||||||||| Sbjct: 15717213 cgctctcgctcgccgccgtc 15717194
>dbj|AK223126.1| Homo sapiens mRNA for fibroblast growth factor receptor 1 isoform 6 precursor variant, clone: KDN01452 Length = 1898 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 207 cagcggcgcgctcgcggccg 188
>dbj|AK222718.1| Homo sapiens mRNA for fibroblast growth factor receptor 1 isoform 2 precursor variant, clone: COL06728 Length = 3984 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 205 cagcggcgcgctcgcggccg 186
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 3732696 cagcggcgcgctcgcggccg 3732715
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 cggcgccaacgtcagcggcg 420 |||||||||||||||||||| Sbjct: 1187896 cggcgccaacgtcagcggcg 1187915
>gb|AC087623.21| Homo sapiens chromosome 8, clone RP11-350N15, complete sequence Length = 162835 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 43895 cagcggcgcgctcgcggccg 43876
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 cggcgcgctcgcggccgcca 435 |||||||||||||||||||| Sbjct: 1334245 cggcgcgctcgcggccgcca 1334264
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 179 cgacgacgcgcagctgctggacga 202 |||||||||||| ||||||||||| Sbjct: 1291309 cgacgacgcgcatctgctggacga 1291286
>dbj|AP004396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0404D10 Length = 155069 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 cgctctcgctcgccgccgtc 326 |||||||||||||||||||| Sbjct: 31669 cgctctcgctcgccgccgtc 31650
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 gctcaatgccgacttccgcgccgt 352 ||||||||||||| |||||||||| Sbjct: 173589 gctcaatgccgacatccgcgccgt 173566
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 322 ccgtcacgctcaatgccgac 341 |||||||||||||||||||| Sbjct: 2496576 ccgtcacgctcaatgccgac 2496557
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 304 cgtcgctctcgctcgccgccgtca 327 |||||||| ||||||||||||||| Sbjct: 2617394 cgtcgctcgcgctcgccgccgtca 2617417
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 cgtcagcggcgcgctcgcgg 429 |||||||||||||||||||| Sbjct: 9835740 cgtcagcggcgcgctcgcgg 9835759
>emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb0112E17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140806 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 cgtcagcggcgcgctcgcgg 429 |||||||||||||||||||| Sbjct: 96615 cgtcagcggcgcgctcgcgg 96596
>emb|CR956622.12| Pig DNA sequence from clone PigE-219N9 on chromosome 6, complete sequence Length = 174170 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 gccaacaccctgctgcagct 373 |||||||||||||||||||| Sbjct: 109665 gccaacaccctgctgcagct 109684
>dbj|AB208919.1| Homo sapiens mRNA for fibroblast growth factor receptor 1 isoform 1 precursor variant protein Length = 4157 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 193 cagcggcgcgctcgcggccg 174
>gb|M60485.1|HUMFGFAA Human fibroblast growth factor receptor mRNA, complete cds Length = 3901 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 413 cagcggcgcgctcgcggccg 432 |||||||||||||||||||| Sbjct: 182 cagcggcgcgctcgcggccg 163
>dbj|AB257298.1| Apis mellifera AbsCAM mRNA for Dscam family member AbsCAM, complete cds Length = 6524 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 ccagccaggcgccgctcgaa 239 |||||||||||||||||||| Sbjct: 543 ccagccaggcgccgctcgaa 524 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,014,577 Number of Sequences: 3902068 Number of extensions: 2014577 Number of successful extensions: 51117 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 66 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49166 Number of HSP's gapped (non-prelim): 1951 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)