ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl17a04 |
|---|---|
| Clone Library Name | barley_pub |
>NFAC4_HUMAN (Q14934) Nuclear factor of activated T-cells, cytoplasmic 4| (NF-ATc4) (NFATc4) (T cell transcription factor NFAT3) (NF-AT3) Length = 902 Score = 32.3 bits (72), Expect = 0.73 Identities = 39/131 (29%), Positives = 48/131 (36%), Gaps = 16/131 (12%) Frame = +1 Query: 136 PQPGGSSLHSPGFLLQPPDLARSTAIC------FRRAAAR---GWPLAAVDPRSAGTPSW 288 P PG SSL S F D A A C AA+R G PL + PR++ P W Sbjct: 169 PSPGSSSLSSWSFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPS--PRASPRP-W 225 Query: 289 SPPVPWQSXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGPSVPSLWRP-------TRGAA 447 +P PW G GP L S G P+ P P + G Sbjct: 226 TPEDPW--------SLYGPSPGGRGPEDSWLLLSAPGPTPASPRPASPCGKRRYSSSGTP 277 Query: 448 VSAAAEISLHG 480 SA+ +S G Sbjct: 278 SSASPALSRRG 288
>YDIJ_ECOLI (P77748) Hypothetical protein ydiJ| Length = 1018 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +1 Query: 142 PGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 264 P G + H GFL + A+ TA R A G P+ VDP Sbjct: 826 PNGKAQHIKGFLNRFAKTAKKTADFLNRMAKLGMPMVGVDP 866
>Y1163_HAEIN (Q57252) Protein HI1163| Length = 1027 Score = 31.6 bits (70), Expect = 1.2 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +1 Query: 139 QPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDP 264 +P G ++H GFL + A++ A R A G PL VDP Sbjct: 826 KPNGKAMHIKGFLKRFSKTAQNQAEFLNRMAKLGIPLVGVDP 867
>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional| activator IE175) (Alpha-4 protein) Length = 1298 Score = 31.6 bits (70), Expect = 1.2 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 8/108 (7%) Frame = -2 Query: 467 ISAAAETAAPRVGRQRE--------GTDGPTPRVDRQREGTAGPAPLXXXXXXXXXXXXA 312 ++AAA +AAPR GR+R+ G GP P ++ A + Sbjct: 714 LAAAAASAAPREGRKRKSPGPARPPGGGGPRPPKTKKSGADAPGSDARAPLPAPAPPSTP 773 Query: 311 DCQGTGGLQEGVPADLGSTAARGHPLAAARRKQMAVERARSGGWRRKP 168 Q P + AR P+A +RR + GGWRR+P Sbjct: 774 PGPEPAPAQPAAPR-AAAAQARPRPVAVSRRPAEGPDPL--GGWRRQP 818
>EBNA4_EBV (P03203) Epstein-Barr nuclear antigen 4 (EBV nuclear antigen 4)| (EBNA-4) (EBNA-3B) Length = 938 Score = 31.6 bits (70), Expect = 1.2 Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Frame = +1 Query: 187 PDLARSTAICFRRAAARGW---PLAAVDPRSAGTPSWSPPVPWQSXXXXXXXXXXXXXSG 357 P L A+ R AA GW P + + P + PPV + Sbjct: 785 PSLKLQAAL--ERQAAAGWQPSPGSGTSDKIVQAPIFYPPVLQPIQVMGQGGSPTAMAAS 842 Query: 358 AGPAVPSLW-RSTRGVGPSVPSLWRPTRGAAVSAAAEISL-HGPSSVLP 498 A P+ + R RGVGP P+ P++ A + A E + HG +S P Sbjct: 843 AVTQAPTEYTRERRGVGPMPPTDIPPSKRAKIEAYTEPEMPHGGASHSP 891
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 30.4 bits (67), Expect = 2.8 Identities = 29/96 (30%), Positives = 33/96 (34%) Frame = +1 Query: 130 PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSPPVPWQ 309 PR S SPG +QP A A C A+ G P AA + P+ PP Sbjct: 189 PRLSRSSSETRSPGGTVQPKSPAPLAARC--SASRAGCPTAA----GSLLPAPRPP---- 238 Query: 310 SXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGPSVP 417 A PA PS R R PS P Sbjct: 239 -------ASSASSPQAAAPAAPSATRLPRRTTPSAP 267
>PRP4B_MOUSE (Q61136) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (Pre-mRNA protein kinase) Length = 1007 Score = 30.0 bits (66), Expect = 3.6 Identities = 20/37 (54%), Positives = 22/37 (59%) Frame = +3 Query: 354 RRRSSSPLPLAVHPRRRSISPLPLAAHPRRSRFSRSR 464 RRRS SPL + PRRRS SP RSR S+SR Sbjct: 448 RRRSRSPLRRSRSPRRRSRSP----RRRDRSRRSKSR 480
>PRP4B_HUMAN (Q13523) Serine/threonine-protein kinase PRP4 homolog (EC 2.7.11.1)| (PRP4 pre-mRNA-processing factor 4 homolog) (PRP4 kinase) Length = 1007 Score = 30.0 bits (66), Expect = 3.6 Identities = 20/37 (54%), Positives = 21/37 (56%) Frame = +3 Query: 354 RRRSSSPLPLAVHPRRRSISPLPLAAHPRRSRFSRSR 464 RRRS SPL + PRRRS SP RR R RSR Sbjct: 448 RRRSRSPLRRSRSPRRRSRSP------RRRDRGRRSR 478
>ZFNL5_ARATH (Q5RJC5) Zinc finger CCCH type domain-containing protein ZFN-like 5| Length = 435 Score = 29.6 bits (65), Expect = 4.7 Identities = 13/42 (30%), Positives = 20/42 (47%) Frame = +1 Query: 283 SWSPPVPWQSXXXXXXXXXXXXXSGAGPAVPSLWRSTRGVGP 408 S+SP P Q+ +G P +PS++ +RGV P Sbjct: 240 SFSPKAPSQASSTSWSSTRHMNGTGTAPFIPSMFPHSRGVTP 281
>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of| white-apricot homolog 2) Length = 659 Score = 29.6 bits (65), Expect = 4.7 Identities = 29/101 (28%), Positives = 34/101 (33%), Gaps = 10/101 (9%) Frame = +3 Query: 204 HRHLLPPGRRQGMAPCRRRSEVRRHP----------LLEPXXXXXXXXXXXXXXXXTPGQ 353 HR+ P RR G P RRRS R H L Sbjct: 436 HRYSRSPARRGGYGP-RRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLT 494 Query: 354 RRRSSSPLPLAVHPRRRSISPLPLAAHPRRSRFSRSRDLPS 476 R RS SP P R RS S P + P R + +R P+ Sbjct: 495 RSRSHSPSPSQSRSRSRSRSQSP-SPSPAREKLTRPAASPA 534
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 6/43 (13%) Frame = +3 Query: 345 PGQRRRSSSPLPLAVH------PRRRSISPLPLAAHPRRSRFS 455 P +RRRS SP P PRRRS SP P P R+S Sbjct: 548 PARRRRSPSPPPPPRRRRSPSLPRRRSPSPPPRRRSPSPRRYS 590
>UBP51_HUMAN (Q70EK9) Ubiquitin carboxyl-terminal hydrolase 51 (EC 3.1.2.15)| (Ubiquitin thioesterase 51) (Ubiquitin-specific-processing protease 51) (Deubiquitinating enzyme 51) Length = 711 Score = 29.6 bits (65), Expect = 4.7 Identities = 14/27 (51%), Positives = 14/27 (51%) Frame = +1 Query: 121 KP*PRPQPGGSSLHSPGFLLQPPDLAR 201 KP PRPQP S PG PP AR Sbjct: 103 KPRPRPQPRARSRSQPGLSAPPPPPAR 129
>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 29.6 bits (65), Expect = 4.7 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = -2 Query: 305 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 183 QG GG +E V D G+ + GHPL+ A + A+ GG Sbjct: 29 QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72
>KAPR_ASPFU (Q96UX3) cAMP-dependent protein kinase regulatory subunit (PKA| regulatory subunit) Length = 413 Score = 29.6 bits (65), Expect = 4.7 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 12/62 (19%) Frame = +1 Query: 148 GSSLHSPGFLLQPPDLARSTAICFRRAAARGWP------------LAAVDPRSAGTPSWS 291 G G ++PP AR TA AA +G+P +++P SAG+ SW+ Sbjct: 85 GQGSEGQGEHVEPPGGARPTA-----AANQGFPNNYALGRRTSVSAESLNPTSAGSDSWT 139 Query: 292 PP 297 PP Sbjct: 140 PP 141
>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 443 Score = 29.6 bits (65), Expect = 4.7 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%) Frame = -2 Query: 305 QGTGGLQEG---VPADLGSTAARGHPLAAARRKQMAVERARSGG 183 QG GG +E V D G+ + GHPL+ A + A+ GG Sbjct: 29 QGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGGGG 72
>ATPD_STRLI (P50008) ATP synthase delta chain (EC 3.6.3.14)| Length = 272 Score = 29.6 bits (65), Expect = 4.7 Identities = 19/39 (48%), Positives = 24/39 (61%) Frame = +3 Query: 354 RRRSSSPLPLAVHPRRRSISPLPLAAHPRRSRFSRSRDL 470 R R SSP +V RS +P+ L A RSR+S+SRDL Sbjct: 61 RPRPSSP---SVSSAPRSAAPVDLVAGTVRSRWSQSRDL 96
>MSH4_HUMAN (O15457) MutS protein homolog 4| Length = 936 Score = 24.6 bits (52), Expect(2) = 5.8 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = +1 Query: 424 WRPTRGAAVSAAAEISLHGPSSVL 495 W P G + S+++ IS H PS ++ Sbjct: 135 WTPQVGYSASSSSAISAHSPSVIV 158 Score = 23.1 bits (48), Expect(2) = 5.8 Identities = 8/23 (34%), Positives = 15/23 (65%) Frame = +1 Query: 244 PLAAVDPRSAGTPSWSPPVPWQS 312 PL+ +P+ +G SW+P V + + Sbjct: 121 PLSTGNPQRSGYKSWTPQVGYSA 143
>PACC_NEUCR (Q7RVQ8) pH-response transcription factor pacC/RIM101| Length = 621 Score = 29.3 bits (64), Expect = 6.2 Identities = 26/92 (28%), Positives = 35/92 (38%) Frame = +1 Query: 160 HSPGFLLQPPDLARSTAICFRRAAARGWPLAAVDPRSAGTPSWSPPVPWQSXXXXXXXXX 339 HSP + +P +I A+ PL+A P SAGTP+ +P Sbjct: 393 HSPTYATRP-------SIDPYHGASLASPLSATSPHSAGTPAVTP-----------TPSN 434 Query: 340 XXXXSGAGPAVPSLWRSTRGVGPSVPSLWRPT 435 SG P+ S S S PS+ PT Sbjct: 435 MSYTSGHSPSTSSTSLSPTSRHSSTPSVSYPT 466
>ADRB1_FELCA (Q9TST6) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 474 Score = 28.9 bits (63), Expect = 8.1 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Frame = +1 Query: 151 SSLHSPGFLLQPPDLARS--TAICFRRAAARGWPLAAVD-PRSAG-TPSWSPP 297 +S +P + PD ++ +CF R AARG AA D PR++G P PP Sbjct: 365 NSAFNPIIYCRSPDFRKAFQRLLCFARRAARGGHAAAGDRPRASGCLPGTRPP 417
>BRO1_EMENI (Q6XPR4) Vacuolar protein-sorting protein bro1 (BRO| domain-containing protein 1) Length = 1000 Score = 28.9 bits (63), Expect = 8.1 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Frame = +1 Query: 115 SAKP*PRPQPGGSSLHSPGFLLQPPDLARSTAICFRRAAARGWP-LAAVDPRSAGTPSWS 291 S +P P P GSS P PP ++ A A + P A P+ GTP Sbjct: 791 STEPKPPSVPPGSSTAGPAKAKSPPPPVKAPAYPTNIAPPKASPHFAPTVPQQHGTPVSH 850 Query: 292 PPVPW 306 P P+ Sbjct: 851 SPAPY 855 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,498,552 Number of Sequences: 219361 Number of extensions: 1032623 Number of successful extensions: 3988 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3571 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3964 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
