ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 76 6e-11
2dbj|AK101888.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 6e-11
3gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 76 6e-11
4gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome... 68 1e-08
5gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosom... 68 1e-08
6ref|NM_187868.1| Oryza sativa (japonica cultivar-group), Ozsa831... 46 0.053
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.053
8dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.053
9dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.053
10emb|AJ430863.1|LDO430863 Leishmania donovani tryS gene for trypa... 42 0.83
11ref|XM_480820.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.3
12ref|NM_192244.1| Oryza sativa (japonica cultivar-group), predic... 40 3.3
13ref|XM_479609.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.3
14ref|XM_479592.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.3
15gb|AF377947.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.3
16gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 3.3
17gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 3.3
18gb|AC103580.4| Trypanosoma brucei chromosome 4 clone RPCI93-5E12... 40 3.3
19gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 3.3
20gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.3
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.3
22gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genom... 40 3.3
23ref|XM_821735.1| Trypanosoma brucei TREU927 clone RPCI93-5E12 dy... 40 3.3
24gb|AY459338.1| Oryza sativa (japonica cultivar-group) clone CL02... 40 3.3
25gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 genomic ... 40 3.3
26gb|AC150559.31| Medicago truncatula clone mth2-67j8, complete se... 40 3.3
27dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
28ref|NM_001013520.1| Danio rerio cadherin 6 (cdh6), mRNA 40 3.3
29dbj|AP008980.1| Terrabacter sp. DBF63 plasmid pDBF1 genes, compl... 40 3.3
30dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
32dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
33dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
34dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.3
35gb|BC090908.1| Danio rerio cadherin 6, mRNA (cDNA clone MGC:1036... 40 3.3
36dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
37dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
38dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
39dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
40dbj|AB193290.1| Danio rerio cdh6 mRNA for cadherin 6, complete cds 40 3.3
41dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
42dbj|AB084235.1| Terrabacter sp. DBF63 ISTesp2 and phthalate cata... 40 3.3
43dbj|AB054975.1| Terrabacter sp. DBF63 DNA, angular dioxygenase r... 40 3.3
44dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
45dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
46dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
47dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
48dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.3
49dbj|AK111371.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
50dbj|AK103824.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
51dbj|AK101659.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
52dbj|AK099674.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
53dbj|AK062636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.3
54gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 3.3 
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 98/118 (83%)
 Strand = Plus / Minus

                                                                            
Query: 105      ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 27845868 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27845809

                                                                          
Query: 165      gaccggatctccgcggctggcgacccccgcttccccatcgccctcctcgccgtcgccg 222
                  | ||||| |||| ||   ||||||||||||||||||| ||||||||||||||||||
Sbjct: 27845808 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccg 27845751



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 97/118 (82%)
 Strand = Plus / Plus

                                                                            
Query: 105      ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 27716358 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27716417

                                                                          
Query: 165      gaccggatctccgcggctggcgacccccgcttccccatcgccctcctcgccgtcgccg 222
                  | ||||| ||||  |   ||||||||||||||||||| ||||||||||||||||||
Sbjct: 27716418 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccg 27716475



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 199      ccatcgccctcctcgccgtcgccg 222
                |||||||||||||| |||||||||
Sbjct: 22477385 ccatcgccctcctctccgtcgccg 22477408
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>dbj|AK101888.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M12, full
           insert sequence
          Length = 3586

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 98/118 (83%)
 Strand = Plus / Plus

                                                                       
Query: 105 ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164
           |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 137 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 196

                                                                     
Query: 165 gaccggatctccgcggctggcgacccccgcttccccatcgccctcctcgccgtcgccg 222
             | ||||| |||| ||   ||||||||||||||||||| ||||||||||||||||||
Sbjct: 197 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccg 254
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 75.8 bits (38), Expect = 6e-11
 Identities = 98/118 (83%)
 Strand = Plus / Minus

                                                                            
Query: 105      ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 27869856 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27869797

                                                                          
Query: 165      gaccggatctccgcggctggcgacccccgcttccccatcgccctcctcgccgtcgccg 222
                  | ||||| |||| ||   ||||||||||||||||||| ||||||||||||||||||
Sbjct: 27869796 tccaggatcgccgccgcctccgacccccgcttccccatctccctcctcgccgtcgccg 27869739



 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 97/118 (82%)
 Strand = Plus / Plus

                                                                            
Query: 105      ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164
                |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 27740346 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 27740405

                                                                          
Query: 165      gaccggatctccgcggctggcgacccccgcttccccatcgccctcctcgccgtcgccg 222
                  | ||||| ||||  |   ||||||||||||||||||| ||||||||||||||||||
Sbjct: 27740406 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccg 27740463



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 199      ccatcgccctcctcgccgtcgccg 222
                |||||||||||||| |||||||||
Sbjct: 22787296 ccatcgccctcctctccgtcgccg 22787319
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>gb|AC146937.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0004O15 map near R3342S, complete sequence
          Length = 140142

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 97/118 (82%)
 Strand = Plus / Minus

                                                                        
Query: 105  ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164
            |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 5615 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 5556

                                                                      
Query: 165  gaccggatctccgcggctggcgacccccgcttccccatcgccctcctcgccgtcgccg 222
              | ||||| ||||  |   ||||||||||||||||||| ||||||||||||||||||
Sbjct: 5555 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccg 5498
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>gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0059H21
              map R3342S, complete sequence
          Length = 133790

 Score = 67.9 bits (34), Expect = 1e-08
 Identities = 97/118 (82%)
 Strand = Plus / Minus

                                                                          
Query: 105    ctcctcgccgccaccctcagcgccgacaaaacgtccgtggacgccgccaccgctggcctc 164
              |||||| |||||||||| ||| |||||||  || | |||||||||||||| |  || |||
Sbjct: 129314 ctcctctccgccaccctgagccccgacaaggcggcggtggacgccgccacggaagggctc 129255

                                                                        
Query: 165    gaccggatctccgcggctggcgacccccgcttccccatcgccctcctcgccgtcgccg 222
                | ||||| ||||  |   ||||||||||||||||||| ||||||||||||||||||
Sbjct: 129254 tccaggatcgccgcctcctccgacccccgcttccccatctccctcctcgccgtcgccg 129197
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>ref|NM_187868.1| Oryza sativa (japonica cultivar-group), Ozsa8312 predicted mRNA
          Length = 1713

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 98  ccggagcctcctcgccgccaccc 120
           |||||||||||||||||||||||
Sbjct: 675 ccggagcctcctcgccgccaccc 653
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 98      ccggagcctcctcgccgccaccc 120
               |||||||||||||||||||||||
Sbjct: 8347567 ccggagcctcctcgccgccaccc 8347545



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 202      tcgccctcctcgccgtcgcc 221
                ||||||||||||||||||||
Sbjct: 40214424 tcgccctcctcgccgtcgcc 40214443



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 202      tcgccctcctcgccgtcgcc 221
                ||||||||||||||||||||
Sbjct: 25593597 tcgccctcctcgccgtcgcc 25593578



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 202      tcgccctcctcgccgtcgcc 221
                ||||||||||||||||||||
Sbjct: 23461169 tcgccctcctcgccgtcgcc 23461150
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>dbj|AP001278.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0434D08
          Length = 161266

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 98     ccggagcctcctcgccgccaccc 120
              |||||||||||||||||||||||
Sbjct: 141498 ccggagcctcctcgccgccaccc 141476
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>dbj|AP000816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0503G09
          Length = 59843

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 98    ccggagcctcctcgccgccaccc 120
             |||||||||||||||||||||||
Sbjct: 12193 ccggagcctcctcgccgccaccc 12171
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>emb|AJ430863.1|LDO430863 Leishmania donovani tryS gene for trypanothione synthetase
          Length = 1959

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 209  cctcgccgtcgccggaggggatggt 233
            |||||||||||||||||| ||||||
Sbjct: 1699 cctcgccgtcgccggaggtgatggt 1675
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>ref|XM_480820.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 697

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 197 ccccatcgccctcctcgccg 216
           ||||||||||||||||||||
Sbjct: 184 ccccatcgccctcctcgccg 165
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>ref|NM_192244.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1476

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  tcgccctcctcgccgtcgcc 221
            ||||||||||||||||||||
Sbjct: 1343 tcgccctcctcgccgtcgcc 1324
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>ref|XM_479609.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3465

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 205 ccctcctcgccgtcgccggagggg 228
           ||||||||||||||| ||||||||
Sbjct: 469 ccctcctcgccgtcgtcggagggg 446
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>ref|XM_479592.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 546

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 cgccctcctcgccgtcgccg 222
           ||||||||||||||||||||
Sbjct: 51  cgccctcctcgccgtcgccg 70
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>gb|AF377947.3| Oryza sativa (japonica cultivar-group) chromosome 3, BAC clone
             OSJNBa0032E21, complete sequence
          Length = 137580

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 211   tcgccgtcgccggaggggatggtg 234
             ||||||||||||||| ||||||||
Sbjct: 76796 tcgccgtcgccggagcggatggtg 76773
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 210     ctcgccgtcgccggagggga 229
               ||||||||||||||||||||
Sbjct: 3146634 ctcgccgtcgccggagggga 3146615
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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     caaagaacttcctagggttt 37
              ||||||||||||||||||||
Sbjct: 242806 caaagaacttcctagggttt 242787
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>gb|AC103580.4| Trypanosoma brucei chromosome 4 clone RPCI93-5E12, complete sequence
          Length = 174832

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    caaagaacttcctagggttt 37
             ||||||||||||||||||||
Sbjct: 89089 caaagaacttcctagggttt 89108
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 126     gccgacaaaacgtccgtgga 145
               ||||||||||||||||||||
Sbjct: 2241288 gccgacaaaacgtccgtgga 2241269
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>gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0030E22, complete sequence
          Length = 135468

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 199   ccatcgccctcctcgccgtcgccg 222
             |||||||||||||| |||||||||
Sbjct: 34530 ccatcgccctcctctccgtcgccg 34553
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 211      tcgccgtcgccggaggggatggtg 234
                ||||||||||||||| ||||||||
Sbjct: 30726987 tcgccgtcgccggagcggatggtg 30727010
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>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete
             sequence
          Length = 157970

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 211   tcgccgtcgccggaggggatggtg 234
             ||||||||||||||| ||||||||
Sbjct: 35403 tcgccgtcgccggagcggatggtg 35380
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>ref|XM_821735.1| Trypanosoma brucei TREU927 clone RPCI93-5E12 dynein heavy chain
            (Tb927.4.870) partial mRNA
          Length = 13347

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 18   caaagaacttcctagggttt 37
            ||||||||||||||||||||
Sbjct: 8879 caaagaacttcctagggttt 8898
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>gb|AY459338.1| Oryza sativa (japonica cultivar-group) clone CL029396.2 R2R3-MYB gene
            region
          Length = 16710

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  tcgccctcctcgccgtcgcc 221
            ||||||||||||||||||||
Sbjct: 5172 tcgccctcctcgccgtcgcc 5191
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>gb|AC135225.4| Oryza sativa chromosome 3 BAC OJ1112_G08 genomic sequence, complete
             sequence
          Length = 128294

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 211   tcgccgtcgccggaggggatggtg 234
             ||||||||||||||| ||||||||
Sbjct: 35688 tcgccgtcgccggagcggatggtg 35711
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>gb|AC150559.31| Medicago truncatula clone mth2-67j8, complete sequence
          Length = 107641

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 199    ccatcgccctcc-tcgccgtcgccggag 225
              |||||||||||| |||||||||||||||
Sbjct: 103146 ccatcgccctccctcgccgtcgccggag 103173
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>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1485_B09
          Length = 66599

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   tcgccctcctcgccgtcgcc 221
             ||||||||||||||||||||
Sbjct: 13376 tcgccctcctcgccgtcgcc 13395
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>ref|NM_001013520.1| Danio rerio cadherin 6 (cdh6), mRNA
          Length = 4275

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  cctcctcgccgccaccctca 123
            ||||||||||||||||||||
Sbjct: 2235 cctcctcgccgccaccctca 2216
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>dbj|AP008980.1| Terrabacter sp. DBF63 plasmid pDBF1 genes, complete and partial cds
          Length = 70631

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 155   cgctggcctcgaccggatctccgcggctggcg 186
             |||||||||||||| | ||||||||| |||||
Sbjct: 45099 cgctggcctcgacccgctctccgcggttggcg 45130
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 197     ccccatcgccctcctcgccg 216
               ||||||||||||||||||||
Sbjct: 7966622 ccccatcgccctcctcgccg 7966603
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 205      ccctcctcgccgtcgccggagggg 228
                ||||||||||||||| ||||||||
Sbjct: 29303106 ccctcctcgccgtcgtcggagggg 29303129



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 203      cgccctcctcgccgtcgccg 222
                ||||||||||||||||||||
Sbjct: 29099757 cgccctcctcgccgtcgccg 29099738



 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     cctcctcgccgtcgccggag 225
               ||||||||||||||||||||
Sbjct: 1670537 cctcctcgccgtcgccggag 1670518
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 211      tcgccgtcgccggaggggatggtg 234
                ||||||||||||||| ||||||||
Sbjct: 30818411 tcgccgtcgccggagcggatggtg 30818434
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>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1793G04
          Length = 156714

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   tcgccctcctcgccgtcgcc 221
             ||||||||||||||||||||
Sbjct: 80202 tcgccctcctcgccgtcgcc 80221
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 109     tcgccgccaccctcagcgcc 128
               ||||||||||||||||||||
Sbjct: 5832567 tcgccgccaccctcagcgcc 5832586
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>gb|BC090908.1| Danio rerio cadherin 6, mRNA (cDNA clone MGC:103673 IMAGE:7256976),
            complete cds
          Length = 3274

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  cctcctcgccgccaccctca 123
            ||||||||||||||||||||
Sbjct: 2193 cctcctcgccgccaccctca 2174
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>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0597G07
          Length = 152928

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 205   ccctcctcgccgtcgccggagggg 228
             ||||||||||||||| ||||||||
Sbjct: 91795 ccctcctcgccgtcgtcggagggg 91818
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>dbj|AP004559.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0461A06
          Length = 136384

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   ccccatcgccctcctcgccg 216
             ||||||||||||||||||||
Sbjct: 38792 ccccatcgccctcctcgccg 38773
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>dbj|AP003607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0004A09
          Length = 158826

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   tcgccctcctcgccgtcgcc 221
             ||||||||||||||||||||
Sbjct: 40403 tcgccctcctcgccgtcgcc 40384
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>dbj|AP004367.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0696E01
          Length = 194056

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 202    tcgccctcctcgccgtcgcc 221
              ||||||||||||||||||||
Sbjct: 121200 tcgccctcctcgccgtcgcc 121181
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>dbj|AB193290.1| Danio rerio cdh6 mRNA for cadherin 6, complete cds
          Length = 4275

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 104  cctcctcgccgccaccctca 123
            ||||||||||||||||||||
Sbjct: 2235 cctcctcgccgccaccctca 2216
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>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0025A05
          Length = 154298

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   tcgccctcctcgccgtcgcc 221
             ||||||||||||||||||||
Sbjct: 24474 tcgccctcctcgccgtcgcc 24455
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>dbj|AB084235.1| Terrabacter sp. DBF63 ISTesp2 and phthalate catabolic gene cluster
            (phtA1, phtA2, ORF11, phtB, phtA3, phtA4, phtC, phtR),
            complete cds
          Length = 8684

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 155  cgctggcctcgaccggatctccgcggctggcg 186
            |||||||||||||| | ||||||||| |||||
Sbjct: 8548 cgctggcctcgacccgctctccgcggttggcg 8579
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>dbj|AB054975.1| Terrabacter sp. DBF63 DNA, angular dioxygenase region
          Length = 8179

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 155  cgctggcctcgaccggatctccgcggctggcg 186
            |||||||||||||| | ||||||||| |||||
Sbjct: 2672 cgctggcctcgacccgctctccgcggttggcg 2703
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>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:B1425D05, complete sequence
          Length = 66450

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  tcgccctcctcgccgtcgcc 221
            ||||||||||||||||||||
Sbjct: 5774 tcgccctcctcgccgtcgcc 5793
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>dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1606_D04
          Length = 92729

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   cctcctcgccgtcgccggag 225
             ||||||||||||||||||||
Sbjct: 12737 cctcctcgccgtcgccggag 12718
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>dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0088O14
          Length = 179483

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    cctcctcgccgtcgccggag 225
              ||||||||||||||||||||
Sbjct: 139192 cctcctcgccgtcgccggag 139173
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>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1150_E04
          Length = 130973

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   cgccctcctcgccgtcgccg 222
             ||||||||||||||||||||
Sbjct: 34875 cgccctcctcgccgtcgccg 34856
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>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1200_C08
          Length = 106214

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 203   cgccctcctcgccgtcgccg 222
             ||||||||||||||||||||
Sbjct: 47714 cgccctcctcgccgtcgccg 47695
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>dbj|AK111371.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-A06, full
           insert sequence
          Length = 697

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 197 ccccatcgccctcctcgccg 216
           ||||||||||||||||||||
Sbjct: 184 ccccatcgccctcctcgccg 165
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>dbj|AK103824.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033147K24, full
            insert sequence
          Length = 1896

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  tcgccctcctcgccgtcgcc 221
            ||||||||||||||||||||
Sbjct: 1440 tcgccctcctcgccgtcgcc 1421
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>dbj|AK101659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057I21, full
            insert sequence
          Length = 1896

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 202  tcgccctcctcgccgtcgcc 221
            ||||||||||||||||||||
Sbjct: 1440 tcgccctcctcgccgtcgcc 1421
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>dbj|AK099674.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069F21, full
           insert sequence
          Length = 3465

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 205 ccctcctcgccgtcgccggagggg 228
           ||||||||||||||| ||||||||
Sbjct: 469 ccctcctcgccgtcgtcggagggg 446
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>dbj|AK062636.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-D02, full
           insert sequence
          Length = 890

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 203 cgccctcctcgccgtcgccg 222
           ||||||||||||||||||||
Sbjct: 100 cgccctcctcgccgtcgccg 119
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 104     cctcctcgccgccaccctca 123
               ||||||||||||||||||||
Sbjct: 1751706 cctcctcgccgccaccctca 1751725


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,548,873
Number of Sequences: 3902068
Number of extensions: 1548873
Number of successful extensions: 41416
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 40375
Number of HSP's gapped (non-prelim): 1042
length of query: 254
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 232
effective length of database: 17,147,199,772
effective search space: 3978150347104
effective search space used: 3978150347104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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