Clone Information

BLAST Search Result

Clone Name	bastl16h08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS3A_ARATH (Q42262) 40S ribosomal protein S3a	137	8e-33
2	RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)	135	2e-32
3	RS3A_HELAN (P49198) 40S ribosomal protein S3a	134	5e-32
4	RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific ...	133	1e-31
5	RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)	126	1e-29
6	RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)	112	3e-25
7	RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformatio...	112	3e-25
8	RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a	112	3e-25
9	RS3A_MOUSE (P97351) 40S ribosomal protein S3a	112	3e-25
10	RS3A_HUMAN (P61247) 40S ribosomal protein S3a	112	3e-25
11	RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a	112	3e-25
12	RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)	112	3e-25
13	RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a	112	3e-25
14	RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformat...	111	5e-25
15	RS3A_XENTR (Q642T2) 40S ribosomal protein S3a	111	5e-25
16	RS3A_XENLA (Q801S3) 40S ribosomal protein S3a	111	5e-25
17	RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a	110	1e-24
18	RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a	110	1e-24
19	RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a	108	2e-24
20	RS3A_CAEEL (P48154) 40S ribosomal protein S3a	107	9e-24
21	RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich prote...	106	2e-23
22	RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)	104	6e-23
23	RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)	104	6e-23
24	RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)	103	1e-22
25	RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)	102	2e-22
26	RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a	100	1e-21
27	RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)	99	3e-21
28	RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)	99	3e-21
29	RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)	98	4e-21
30	RS3A_METTH (O27630) 30S ribosomal protein S3Ae	36	0.026
31	RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae	35	0.045
32	RS3A_METMP (Q6LZG0) 30S ribosomal protein S3Ae	35	0.059
33	RS3A_METAC (Q8TKI9) 30S ribosomal protein S3Ae	33	0.17
34	RS3A_METMA (Q8Q0F2) 30S ribosomal protein S3Ae	32	0.50
35	RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae	31	0.85
36	RS3A_HALMA (Q5V296) 30S ribosomal protein S3Ae	31	0.85
37	LAT_HUMAN (O43561) Linker for activation of T-cells family membe...	30	1.5
38	SAT_RIFPS (Q54506) Sulfate adenylyltransferase (EC 2.7.7.4) (Sul...	30	1.5
39	RECF_SYNPX (Q7U4L8) DNA replication and repair protein recF	30	1.9
40	LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-bind...	29	2.5
41	RS3A_PYRAE (Q8ZT21) 30S ribosomal protein S3Ae	29	2.5
42	HEM0_BRARE (Q9YHT4) 5-aminolevulinate synthase, erythroid-specif...	29	3.2
43	VG78_ICHV1 (Q00167) Hypothetical gene 78 zinc-binding protein	28	4.2
44	YL54_CAEEL (P34434) Hypothetical protein F44E2.4	28	5.5
45	PAK4_HUMAN (O96013) Serine/threonine-protein kinase PAK 4 (EC 2....	28	7.2
46	CO8A_HUMAN (P07357) Complement component C8 alpha chain precurso...	27	9.4
47	METE_SULSO (Q980A9) Probable methylcobalamin:homocysteine methyl...	27	9.4
48	RS3A_THEVO (Q978Z2) 30S ribosomal protein S3Ae	27	9.4
49	SYI_CORGL (Q8NNP0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole...	27	9.4

>RS3A_ARATH (Q42262) 40S ribosomal protein S3a|
          Length = 261

 Score =  137 bits (344), Expect = 8e-33
 Identities = 67/74 (90%), Positives = 70/74 (94%)
 Frame = +2

Query: 134 AVDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 313
           AVDPF+KK WYD+KAP  FT+RNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 
Sbjct: 19  AVDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDN 78

Query: 314 AYRKIRLRAEDVQG 355
           AYRKIRLRAEDVQG
Sbjct: 79  AYRKIRLRAEDVQG 92

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>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)|
          Length = 261

 Score =  135 bits (341), Expect = 2e-32
 Identities = 66/73 (90%), Positives = 68/73 (93%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF KK WYDIKAP +F  RN+GKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA
Sbjct: 20  VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 79

Query: 317 YRKIRLRAEDVQG 355
           YRKIRLRAEDVQG
Sbjct: 80  YRKIRLRAEDVQG 92

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>RS3A_HELAN (P49198) 40S ribosomal protein S3a|
          Length = 259

 Score =  134 bits (337), Expect = 5e-32
 Identities = 65/74 (87%), Positives = 69/74 (93%)
 Frame = +2

Query: 134 AVDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 313
           A DPF+KK WYDIKAP LF +RNVGKTLV+RTQGTKIASEGLKHRVFEVSLADLQNDED 
Sbjct: 19  AADPFSKKDWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDH 78

Query: 314 AYRKIRLRAEDVQG 355
           +YRKIRLRAEDVQG
Sbjct: 79  SYRKIRLRAEDVQG 92

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>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein|
           BIS289)
          Length = 261

 Score =  133 bits (334), Expect = 1e-31
 Identities = 66/73 (90%), Positives = 66/73 (90%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF KK WYDIKAP  FT RNVGKTLVSRTQGTKIASEGLKHRVFEVSLADL  DEDQA
Sbjct: 20  VDPFAKKDWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQA 79

Query: 317 YRKIRLRAEDVQG 355
           YRKIRLRAEDVQG
Sbjct: 80  YRKIRLRAEDVQG 92

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>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)|
          Length = 259

 Score =  126 bits (316), Expect = 1e-29
 Identities = 59/74 (79%), Positives = 67/74 (90%)
 Frame = +2

Query: 134 AVDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 313
           A DPF KK WYDIKAP +F+ RNVGKTLV+RTQGTKIASEGL+HRVFE+SLADLQ DED 
Sbjct: 19  AADPFAKKDWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEISLADLQGDEDH 78

Query: 314 AYRKIRLRAEDVQG 355
           ++RKIRLRAED+QG
Sbjct: 79  SFRKIRLRAEDIQG 92

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>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)|
          Length = 260

 Score =  112 bits (279), Expect = 3e-25
 Identities = 55/73 (75%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGTKIAS+GLK RVFEVSLADLQNDE  A
Sbjct: 18  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 76

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 77  FRKFKLITEDVQG 89

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>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector|
           protein) [Contains: 40S ribosomal protein S3b]
          Length = 263

 Score =  112 bits (279), Expect = 3e-25
 Identities = 55/73 (75%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGTKIAS+GLK RVFEVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLITEDVQG 92

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>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a|
          Length = 263

 Score =  112 bits (279), Expect = 3e-25
 Identities = 55/73 (75%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGTKIAS+GLK RVFEVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLITEDVQG 92

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>RS3A_MOUSE (P97351) 40S ribosomal protein S3a|
          Length = 263

 Score =  112 bits (279), Expect = 3e-25
 Identities = 55/73 (75%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGTKIAS+GLK RVFEVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLITEDVQG 92

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>RS3A_HUMAN (P61247) 40S ribosomal protein S3a|
          Length = 263

 Score =  112 bits (279), Expect = 3e-25
 Identities = 55/73 (75%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGTKIAS+GLK RVFEVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLITEDVQG 92

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>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a|
          Length = 263

 Score =  112 bits (279), Expect = 3e-25
 Identities = 55/73 (75%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGTKIAS+GLK RVFEVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLITEDVQG 92

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>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)|
          Length = 263

 Score =  112 bits (279), Expect = 3e-25
 Identities = 55/73 (75%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGTKIAS+GLK RVFEVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLITEDVQG 92

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>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a|
          Length = 263

 Score =  112 bits (279), Expect = 3e-25
 Identities = 55/73 (75%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGTKIAS+GLK RVFEVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLITEDVQG 92

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>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector|
           protein)
          Length = 265

 Score =  111 bits (277), Expect = 5e-25
 Identities = 55/73 (75%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGTKIAS+GLK RVFEVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLITEDVQG 92

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>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a|
          Length = 263

 Score =  111 bits (277), Expect = 5e-25
 Identities = 55/73 (75%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGTKIAS+GLK RVFEVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLITEDVQG 92

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>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a|
          Length = 263

 Score =  111 bits (277), Expect = 5e-25
 Identities = 55/73 (75%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGTKIAS+GLK RVFEVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLITEDVQG 92

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>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a|
          Length = 263

 Score =  110 bits (274), Expect = 1e-24
 Identities = 54/73 (73%), Positives = 62/73 (84%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGTKIAS+GLK  VFEVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGHVFEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLITEDVQG 92

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>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a|
          Length = 266

 Score =  110 bits (274), Expect = 1e-24
 Identities = 54/73 (73%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGT+IAS+GLK RVFEVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVFEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLVTEDVQG 92

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>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a|
          Length = 265

 Score =  108 bits (271), Expect = 2e-24
 Identities = 53/73 (72%), Positives = 63/73 (86%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYD+KAP +F  RN+GKTLV+RTQGT+IAS+GLK RV+EVSLADLQNDE  A
Sbjct: 21  VDPFSKKDWYDVKAPAMFNIRNLGKTLVTRTQGTRIASDGLKGRVYEVSLADLQNDE-VA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L  EDVQG
Sbjct: 80  FRKFKLITEDVQG 92

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>RS3A_CAEEL (P48154) 40S ribosomal protein S3a|
          Length = 256

 Score =  107 bits (266), Expect = 9e-24
 Identities = 53/74 (71%), Positives = 62/74 (83%)
 Frame = +2

Query: 134 AVDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 313
           AVDPF++K+WYDIKAP +F +R VGKTL++RTQGTKIASEGLK RVFEVSL DL N E  
Sbjct: 18  AVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLNNSEAD 77

Query: 314 AYRKIRLRAEDVQG 355
            +RK +L AEDVQG
Sbjct: 78  -FRKFKLIAEDVQG 90

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>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)|
          Length = 264

 Score =  106 bits (264), Expect = 2e-23
 Identities = 52/73 (71%), Positives = 62/73 (84%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPFTKK+WYD+KAP +F  R +GKTLV+R+QGTKIAS+ LK RVFEVSLADLQNDE   
Sbjct: 21  VDPFTKKEWYDVKAPSMFAVRQIGKTLVTRSQGTKIASDNLKGRVFEVSLADLQNDE-VT 79

Query: 317 YRKIRLRAEDVQG 355
           +RK +L AE+VQG
Sbjct: 80  FRKFKLIAEEVQG 92

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>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)|
          Length = 255

 Score =  104 bits (259), Expect = 6e-23
 Identities = 48/73 (65%), Positives = 60/73 (82%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPFT+K W+DIKAP  F +RNVGKTL++R+ G K A++GLK RVFEV LADLQ  ED +
Sbjct: 20  VDPFTRKDWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHS 79

Query: 317 YRKIRLRAEDVQG 355
           YRKI+LR ++VQG
Sbjct: 80  YRKIKLRVDEVQG 92

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>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)|
          Length = 251

 Score =  104 bits (259), Expect = 6e-23
 Identities = 47/73 (64%), Positives = 60/73 (82%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF++K+WYDIKAP  F  +NVGKTLV+RT G K A++ LK R+ EVSLADLQ DE+ A
Sbjct: 20  VDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHA 79

Query: 317 YRKIRLRAEDVQG 355
           +RK++LR ED+QG
Sbjct: 80  FRKVKLRVEDIQG 92

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>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)|
          Length = 268

 Score =  103 bits (257), Expect = 1e-22
 Identities = 51/75 (68%), Positives = 62/75 (82%), Gaps = 2/75 (2%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQN--DED 310
           VDPFT+K WYD+KAP +F +R  GKTLV+RTQGTKIAS+GLK RVFEVSLADLQN  D +
Sbjct: 21  VDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDAE 80

Query: 311 QAYRKIRLRAEDVQG 355
           +++RK +L AE V G
Sbjct: 81  RSFRKFKLVAESVNG 95

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>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)|
          Length = 251

 Score =  102 bits (254), Expect = 2e-22
 Identities = 46/73 (63%), Positives = 59/73 (80%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF++K WYDIKAP  F  +NVGKTLV+RT G K A++ LK R+ EVSLADLQ DE+ +
Sbjct: 20  VDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEEHS 79

Query: 317 YRKIRLRAEDVQG 355
           +RK++LR ED+QG
Sbjct: 80  FRKVKLRVEDIQG 92

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>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a|
          Length = 247

 Score =  100 bits (248), Expect = 1e-21
 Identities = 52/73 (71%), Positives = 57/73 (78%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPF+KK WYDIKAP        G+    RT GTKIAS+GL  RVFEVSLADLQNDEDQA
Sbjct: 20  VDPFSKKDWYDIKAPPRSRRARSGRRC-HRTAGTKIASDGLNFRVFEVSLADLQNDEDQA 78

Query: 317 YRKIRLRAEDVQG 355
           +RKI+LRAEDVQG
Sbjct: 79  FRKIKLRAEDVQG 91

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>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)|
          Length = 254

 Score = 99.0 bits (245), Expect = 3e-21
 Identities = 46/73 (63%), Positives = 59/73 (80%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPFT+K+W+DIKAP  F +RNVGKTLV+++ G K AS+ LK RV EV LADLQ  ED +
Sbjct: 20  VDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHS 79

Query: 317 YRKIRLRAEDVQG 355
           +RKI+LR ++VQG
Sbjct: 80  FRKIKLRVDEVQG 92

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>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)|
          Length = 267

 Score = 98.6 bits (244), Expect = 3e-21
 Identities = 49/74 (66%), Positives = 61/74 (82%), Gaps = 2/74 (2%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 310
           VDPF++K WYD+KAP +F +R +GKTLV+RTQG +IAS+ LK RVFEVSLADLQ D D  
Sbjct: 21  VDPFSRKDWYDVKAPNMFQTRQIGKTLVNRTQGQRIASDYLKGRVFEVSLADLQKDIDPE 80

Query: 311 QAYRKIRLRAEDVQ 352
           +++RK RL AEDVQ
Sbjct: 81  RSFRKFRLIAEDVQ 94

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>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)|
          Length = 254

 Score = 98.2 bits (243), Expect = 4e-21
 Identities = 45/73 (61%), Positives = 59/73 (80%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           VDPFT+K+W+DIKAP  F +RNVGKTLV+++ G K AS+ LK RV EV LADLQ  ED +
Sbjct: 20  VDPFTRKEWFDIKAPSTFENRNVGKTLVNKSTGLKNASDALKGRVVEVCLADLQGSEDHS 79

Query: 317 YRKIRLRAEDVQG 355
           +RK++LR ++VQG
Sbjct: 80  FRKVKLRVDEVQG 92

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>RS3A_METTH (O27630) 30S ribosomal protein S3Ae|
          Length = 195

 Score = 35.8 bits (81), Expect = 0.026
 Identities = 22/72 (30%), Positives = 37/72 (51%)
 Frame = +2

Query: 140 DPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAY 319
           D + +K+WY IK+P LF    +G      T  ++     LK RV E ++ +L  D  + Y
Sbjct: 11  DTWKEKKWYVIKSPKLFGENEIG------TTPSRDPDFLLKRRV-EATMRELTGDFSKQY 63

Query: 320 RKIRLRAEDVQG 355
            K++ + + V G
Sbjct: 64  VKLKFQIDSVAG 75

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>RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae|
          Length = 211

 Score = 35.0 bits (79), Expect = 0.045
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +2

Query: 140 DPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAY 319
           D +  K WY I AP +F +  VG+T            E +  RV E +L D+ +D  + +
Sbjct: 4   DKWKDKVWYTILAPDMFDNVEVGETPAD-------DPEKVIGRVLETTLGDVLDDITKHH 56

Query: 320 RKIRLRAEDVQG 355
            K+  R  DV+G
Sbjct: 57  IKVFFRIYDVEG 68

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>RS3A_METMP (Q6LZG0) 30S ribosomal protein S3Ae|
          Length = 225

 Score = 34.7 bits (78), Expect = 0.059
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +2

Query: 134 AVDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQ 313
           A D +  K WYDI     +T ++ G  ++ +T     A+  L  R+ E+SL DL N+  +
Sbjct: 15  AKDTWKSKVWYDI-----YTPQSFGGDVIGQTPANDPAN--LIGRISEISLRDLTNEHSK 67

Query: 314 AYRKIRLRAEDVQG 355
              ++  + + V G
Sbjct: 68  HMTRMYFKVDGVSG 81

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>RS3A_METAC (Q8TKI9) 30S ribosomal protein S3Ae|
          Length = 203

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           +D +  K+WY+I+AP+      VG T+             L  R  E ++ +L ND  + 
Sbjct: 10  LDGWKSKEWYNIEAPVYLNRAIVGNTMAG-------DPSLLVGRNVETTVGELTNDMTKN 62

Query: 317 YRKIRLRAEDVQG 355
             K+ LR  +V G
Sbjct: 63  NTKVILRINNVVG 75

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>RS3A_METMA (Q8Q0F2) 30S ribosomal protein S3Ae|
          Length = 204

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 21/73 (28%), Positives = 33/73 (45%)
 Frame = +2

Query: 137 VDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA 316
           +D +  K+WY+I+AP       VG T+             L  R  E ++ +L ND  + 
Sbjct: 10  LDGWKSKEWYNIEAPAYLNRVIVGTTMAG-------DPSLLVGRNVETTVGELTNDMTKN 62

Query: 317 YRKIRLRAEDVQG 355
             K+ LR  +V G
Sbjct: 63  NTKVILRVNNVVG 75

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>RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae|
          Length = 211

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +2

Query: 140 DPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQND--EDQ 313
           D +T K+W+ + AP  F    +G+T       +K+       R  E +LA+L ND     
Sbjct: 12  DKWTLKKWFTLIAPEYFGMAELGET--PADDASKVVG-----RTVETTLAELTNDYSNQN 64

Query: 314 AYRKIRLRAEDVQG 355
            Y+K+  +   V G
Sbjct: 65  TYKKLIFKVYRVAG 78

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>RS3A_HALMA (Q5V296) 30S ribosomal protein S3Ae|
          Length = 213

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +2

Query: 152 KKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIR 331
           +K+WY ++AP  F    +GKT            + +  R  E +L +L ND  +   K+ 
Sbjct: 12  QKRWYTVQAPEQFDREVLGKTPAEE-------PDKVLGRTIETTLGELTNDASENNTKLT 64

Query: 332 LRAEDV 349
            +  +V
Sbjct: 65  FKINEV 70

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>LAT_HUMAN (O43561) Linker for activation of T-cells family member 1 (36 kDa|
           phospho-tyrosine adapter protein) (pp36) (p36-38)
          Length = 262

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 249 EAILVPCVLDTRVLPTLRLVKSSGALMSYHCFLVNGS 139
           EAILVPCVL   +LP L ++ +    +  HC  + GS
Sbjct: 3   EAILVPCVLGLLLLPILAMLMA----LCVHCHRLPGS 35

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>SAT_RIFPS (Q54506) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate|
           adenylate transferase) (SAT) (ATP-sulfurylase)
          Length = 437

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 12/57 (21%)
 Frame = -2

Query: 155 SW*TDPRPSSCYPSS-------PWRCACSCRPPWLPLRVEW-----RRCGGWSGGLR 21
           +W T   PS+  PSS       PWR   SCRP  L    E      RR G   G LR
Sbjct: 298 AWVTTTVPSTPRPSSMTKCQRAPWRSRSSCRPHGLLQEAEQDCDDARRAGSHQGRLR 354

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>RECF_SYNPX (Q7U4L8) DNA replication and repair protein recF|
          Length = 365

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -2

Query: 353 LAHPQHGV*SSCRPGPHRSEDQLEILQTP----GASGPLR 246
           L  P+     SCR GPHR E  L++  TP    G+SG  R
Sbjct: 242 LQRPEEERLGSCRVGPHRDEVSLQLGGTPARRFGSSGQQR 281

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>LTBP3_HUMAN (Q9NS15) Latent transforming growth factor beta-binding protein 3|
            precursor (LTBP-3)
          Length = 1302

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
 Frame = -2

Query: 134  PSSCYPSS----PWRCACSCRPPWLP 69
            P++C P      P    C CRPPW+P
Sbjct: 1088 PAACRPGRCVNLPGSYRCECRPPWVP 1113

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>RS3A_PYRAE (Q8ZT21) 30S ribosomal protein S3Ae|
          Length = 221

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/73 (24%), Positives = 34/73 (46%)
 Frame = +2

Query: 140 DPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAY 319
           DP+  K+W+ + AP       +G   ++     +  ++ L  R  EVSL D+  D     
Sbjct: 20  DPWALKKWFSVYAPSY-----LGGVFLAEVPANE--AQKLLMRTLEVSLYDITKDISHLP 72

Query: 320 RKIRLRAEDVQGM 358
            K++ +   V+G+
Sbjct: 73  IKLKFQIHRVEGL 85

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>HEM0_BRARE (Q9YHT4) 5-aminolevulinate synthase, erythroid-specific,|
           mitochondrial precursor (EC 2.3.1.37) (5-aminolevulinic
           acid synthase) (Delta-aminolevulinate synthase)
           (Delta-ALA synthetase) (ALAS-E)
          Length = 583

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 198 RLVKSSGALMSYHCFLVNGSTAFFLLPFLP 109
           RL +  GAL+   CF+ N ST F L   LP
Sbjct: 240 RLHQKDGALVFSSCFVANDSTLFTLAKMLP 269

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>VG78_ICHV1 (Q00167) Hypothetical gene 78 zinc-binding protein|
          Length = 400

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 251 LRQSWYPVSWTRGSCRRCG 195
           L   WYP S TRG+C  CG
Sbjct: 143 LGADWYPKSRTRGTCGYCG 161

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>YL54_CAEEL (P34434) Hypothetical protein F44E2.4|
          Length = 1283

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -1

Query: 288  ARDTSNTRCFRPSEAILVPCVLDTRVLPTLRLVKSSGALMS 166
            A  T +    RP +A +VP     RV PTL  V SS  ++S
Sbjct: 971  AMSTPDICPIRPHQAPIVPINQPARVTPTLETVLSSSTMVS 1011

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>PAK4_HUMAN (O96013) Serine/threonine-protein kinase PAK 4 (EC 2.7.11.1)|
           (p21-activated kinase 4) (PAK-4)
          Length = 591

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 171 SRRRCSSPAATSARPSCPGHRVPRLPQR 254
           S  + + PA T A P+ PG   PR PQR
Sbjct: 267 SEPQLAPPACTPAAPAVPGPPGPRSPQR 294

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>CO8A_HUMAN (P07357) Complement component C8 alpha chain precursor (Complement|
           component 8 alpha subunit)
          Length = 584

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 174 RRRCSSPAATSARPSCPGHRV 236
           RR C +PA  +   SCPG +V
Sbjct: 559 RRECDNPAPQNGGASCPGRKV 579

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>METE_SULSO (Q980A9) Probable methylcobalamin:homocysteine methyltransferase|
           (EC 2.1.1.-) (Methionine synthase)
          Length = 332

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 152 KKQWYDIKAPLLFTSRNVG-KTLVSRTQGTKIASEGLKHRVFEV 280
           +K W +    L   SR +  + LVS  +GTK+  E LK + + V
Sbjct: 288 EKVWINPDCGLKLLSRKIAYQKLVSMVEGTKVVREELKRKGYSV 331

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>RS3A_THEVO (Q978Z2) 30S ribosomal protein S3Ae|
          Length = 215

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/72 (23%), Positives = 33/72 (45%)
 Frame = +2

Query: 140 DPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAY 319
           + + +K WY ++AP    S+ V   L          S  + +RV EV +++L  +  ++ 
Sbjct: 12  EKWKEKVWYTVEAPPYLGSKEVSVALGE-------DSNSMVNRVVEVPISELTGNFKKSN 64

Query: 320 RKIRLRAEDVQG 355
            K   R  + +G
Sbjct: 65  EKALFRITNCEG 76

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>SYI_CORGL (Q8NNP0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1054

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 143 PFTKKQWYDIKAPLLFTSRNVGKT 214
           PF  K+W+D  AP  F    +G+T
Sbjct: 568 PFENKEWFDTHAPADFIVEYIGQT 591


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,791,923
Number of Sequences: 219361
Number of extensions: 916509
Number of successful extensions: 2998
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 2889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2975
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result