Clone Information

BLAST Search Result

Clone Name	bastl16h06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AMY_THECU (P29750) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alp...	50	2e-06
2	AMY_STRLM (P09794) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alp...	40	0.001
3	AMY_STRGR (P30270) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alp...	40	0.001
4	AMYG_ASPOR (P36914) Glucoamylase precursor (EC 3.2.1.3) (Glucan ...	40	0.001
5	AMYG_NEUCR (P14804) Glucoamylase precursor (EC 3.2.1.3) (Glucan ...	40	0.002
6	K1434_HUMAN (Q9NPB8) Protein KIAA1434	36	0.020
7	AMY_STRVL (P22998) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alp...	33	0.13
8	CDGT_KLEOX (P08704) Cyclomaltodextrin glucanotransferase precurs...	32	0.30
9	OR6B1_HUMAN (O95007) Olfactory receptor 6B1 (Olfactory receptor ...	30	1.5
10	RHO_STRLI (P52157) Transcription termination factor rho (EC 3.6....	29	2.5
11	CDGT_BACS8 (P17692) Cyclomaltodextrin glucanotransferase precurs...	29	2.5
12	CDGT_BAC11 (P30921) Cyclomaltodextrin glucanotransferase precurs...	29	2.5
13	CDGT2_BACCI (P43379) Cyclomaltodextrin glucanotransferase precur...	29	2.5
14	APBE_CHLMU (Q9PKW2) Thiamine biosynthesis lipoprotein apbE precu...	29	2.5
15	RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70)	29	3.3
16	QUIA_XANCJ (Q9XD78) Probable quinate dehydrogenase [Pyrroloquino...	29	3.3
17	MUTH_ECOL6 (Q8FEA9) DNA mismatch repair protein mutH (Methyl-dir...	28	4.3
18	GEMI5_HUMAN (Q8TEQ6) Gem-associated protein 5 (Gemin5)	28	4.3
19	DTX1_HUMAN (Q86Y01) Protein deltex-1 (Deltex-1) (Deltex1) (hDTX1)	24	5.5
20	MUTH_SHIFL (Q83QC1) DNA mismatch repair protein mutH (Methyl-dir...	28	5.6
21	MUTH_ECOLI (P06722) DNA mismatch repair protein mutH (Methyl-dir...	28	5.6
22	MUTH_ECO57 (Q8X6K2) DNA mismatch repair protein mutH (Methyl-dir...	28	5.6
23	SP21_STIAU (Q06823) Spore protein SP21	28	5.6
24	NETA_DROME (Q24567) Netrin-A precursor	28	5.6
25	CDGT_BACS0 (P05618) Cyclomaltodextrin glucanotransferase precurs...	28	5.6
26	POLG_POL2W (P23069) Genome polyprotein [Contains: Coat protein V...	28	5.6
27	YOR1_BHV1S (Q08104) Hypothetical 16.1 kDa protein (ORF1)	28	5.6
28	N4BP3_HUMAN (O15049) NEDD4-binding protein 3 (N4BP3)	28	5.6
29	CDGT_BACS3 (P09121) Cyclomaltodextrin glucanotransferase precurs...	28	5.6
30	Y3475_BRAJA (Q89PK5) Hypothetical transport protein bll3475	28	5.6
31	POLG_POL2L (P06210) Genome polyprotein [Contains: Coat protein V...	28	5.6
32	TSH_DROME (P22265) Protein teashirt	28	7.3
33	VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protei...	28	7.3
34	CDGT1_BACCI (P30920) Cyclomaltodextrin glucanotransferase precur...	28	7.3
35	P25A_BOVIN (Q27957) Tubulin polymerization-promoting protein (TP...	28	7.3
36	DEF1_STRCO (Q9RD27) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1) ...	28	7.3
37	RLUC_SHIFL (P0AA40) Ribosomal large subunit pseudouridine syntha...	28	7.3
38	RLUC_SALTY (Q8ZQ16) Ribosomal large subunit pseudouridine syntha...	28	7.3
39	RLUC_ECOLI (P0AA39) Ribosomal large subunit pseudouridine syntha...	28	7.3
40	RLUC_ECOL6 (Q8FIP7) Ribosomal large subunit pseudouridine syntha...	28	7.3
41	RLUC_ECO57 (Q8X8J3) Ribosomal large subunit pseudouridine syntha...	28	7.3
42	MRAW_XANOR (Q5GW34) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)	27	9.5
43	GLMU_STRMU (Q8DSX2) Bifunctional protein glmU [Includes: UDP-N-a...	27	9.5
44	GEMI5_MOUSE (Q8BX17) Gem-associated protein 5 (Gemin5)	27	9.5
45	MUTH_SALTY (Q8ZMA8) DNA mismatch repair protein mutH (Methyl-dir...	27	9.5
46	MUTH_SALTI (Q8Z410) DNA mismatch repair protein mutH (Methyl-dir...	27	9.5
47	ILVB_KLETE (Q04524) Acetolactate synthase, catabolic (EC 2.2.1.6...	27	9.5
48	YL409_YEAST (Q06078) Hypothetical 104.8 kDa Trp-Asp repeats-cont...	27	9.5
49	TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoi...	27	9.5
50	DBX1_MOUSE (P52950) Homeobox protein DBX1	27	9.5
51	AGP3_YEAST (P43548) General amino acid permease AGP3	27	9.5
52	SRCA_RABIT (P13666) Sarcalumenin precursor	27	9.5
53	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	27	9.5
54	POLG_HCVJP (Q9DHD6) Genome polyprotein [Contains: Core protein p...	27	9.5

>AMY_THECU (P29750) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 605

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 27/65 (41%), Positives = 32/65 (49%)
 Frame = +3

Query: 147 TVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFT 326
           TVT  F     T +GQ + + GS P LGSW   QG+ L     G   VW G V + AG  
Sbjct: 505 TVTARFHATVTTWYGQEVAVVGSIPELGSWQPAQGVRLR-TDSGTYPVWSGAVDLPAGVG 563

Query: 327 CEYSY 341
            EY Y
Sbjct: 564 FEYKY 568

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>AMY_STRLM (P09794) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 566

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +3

Query: 138 GKNTVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAA 317
           G    +  F +   T WG+++ + G   ALG+W   + L L P       VW   V +AA
Sbjct: 467 GTGQTSASFHVNATTAWGENIYVTGDQAALGNWDPARALKLDPAAYP---VWKLDVPLAA 523

Query: 318 GFTCEYSY 341
           G   +Y Y
Sbjct: 524 GTPFQYKY 531

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>AMY_STRGR (P30270) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 566

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +3

Query: 138 GKNTVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAA 317
           G    +  F +   T WG+++ + G   ALG+W   + L L P       VW   V +AA
Sbjct: 467 GTGQTSASFHVNATTAWGENIYVTGDQAALGNWDPARALKLDPAAYP---VWKLDVPLAA 523

Query: 318 GFTCEYSY 341
           G   +Y Y
Sbjct: 524 GTPFQYKY 531

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>AMYG_ASPOR (P36914) Glucoamylase precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase)
          Length = 612

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +3

Query: 147 TVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSL-SPVHQGNALVWCGQVSVAAGF 323
           TV+V F +   T +G+S+ I GS   LGSW+     +L +  +  +  +W G +++ AG 
Sbjct: 511 TVSVTFAVKATTVYGESIKIVGSISQLGSWNPSSATALNADSYTTDNPLWTGTINLPAGQ 570

Query: 324 TCEYSY 341
           + EY +
Sbjct: 571 SFEYKF 576

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>AMYG_NEUCR (P14804) Glucoamylase precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase)
          Length = 626

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 150 VTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLS-PVHQGNALVWCGQVSVAAGFT 326
           V V F     T +GQ++ + GS  ALG+W+   G++LS   +  +  +W   +++  G +
Sbjct: 526 VLVTFNEKVTTSYGQTVKVVGSIAALGNWAPASGVTLSAKQYSSSNPLWSTTIALPQGTS 585

Query: 327 CEYSYHVV 350
            +Y Y VV
Sbjct: 586 FKYKYVVV 593

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>K1434_HUMAN (Q9NPB8) Protein KIAA1434|
          Length = 672

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 189 GQSLVIAGSAPALGSWSVKQGLSLSPVHQ-GNALVWCGQVSVAAGFTCEYSY 341
           G+   I GS  ALG+W+ +  ++L P +  G +++W   + ++ G + +Y Y
Sbjct: 17  GEVFAICGSCDALGNWNPQNAVALLPENDTGESMLWKATIVLSRGVSVQYRY 68

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>AMY_STRVL (P22998) Alpha-amylase precursor (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase)
          Length = 569

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +3

Query: 162 FKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYSY 341
           F +   T  GQ++ + G+   LG+W+    L L P       VW   V + AG + EY Y
Sbjct: 478 FNVTATTVVGQNIYVTGNRAELGNWAPASALKLDP---ATYPVWKLTVGLPAGTSFEYKY 534

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>CDGT_KLEOX (P08704) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 655

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 177 YTQWGQSLVIAGSAPALGSWSVKQGLSLSP 266
           YT  GQS+ I G+ P LG W + + + +SP
Sbjct: 570 YTISGQSVYIIGNIPQLGGWDLTKAVKISP 599

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>OR6B1_HUMAN (O95007) Olfactory receptor 6B1 (Olfactory receptor 7-3) (OR7-3)|
          Length = 311

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 222 ALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYS 338
           ALGSW++  G+SL+ ++  + L +CG  +V   F C+ S
Sbjct: 145 ALGSWAIGFGISLAKIYFISCLSFCGP-NVINHFFCDIS 182

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>RHO_STRLI (P52157) Transcription termination factor rho (EC 3.6.1.-)|
           (ATP-dependent helicase rho)
          Length = 707

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -3

Query: 323 EAGGDRNLATPDQRVPLVNRA--QGQPLLDAPGPERRRGAGDDEALP 189
           +A   + +  P Q  P VN +  Q  P  DAP   RRR A  D   P
Sbjct: 134 KAAAQQQIEIPGQPTPKVNASAEQAAPADDAPSERRRRRATSDAGSP 180

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>CDGT_BACS8 (P17692) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
           (Raw-starch-digesting amylase)
          Length = 713

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +3

Query: 180 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSY 341
           T  GQ+L + G+   LG+W   +  ++ P++  N +V     W   VSV AG T E+ +
Sbjct: 625 TALGQNLYLTGNVSELGNWDPAK--AIGPMY--NQVVYQYPNWYYDVSVPAGKTIEFKF 679

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>CDGT_BAC11 (P30921) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 713

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
 Frame = +3

Query: 180 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSY 341
           T  GQ++ +AGS   LG+W   +  ++ P++  N ++     W   V+V AG T E+ +
Sbjct: 625 TALGQNVYLAGSVSELGNWDPAK--AIGPLY--NQVIYQYPTWYYDVTVPAGKTIEFKF 679

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>CDGT2_BACCI (P43379) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 713

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = +3

Query: 180 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSY 341
           T  GQ++ + GS   LG+W   +  ++ P++  N +V     W   VSV AG T E+ +
Sbjct: 625 TALGQNVYLTGSVSELGNWDPAK--AIGPMY--NQVVYQYPNWYYDVSVPAGKTIEFKF 679

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>APBE_CHLMU (Q9PKW2) Thiamine biosynthesis lipoprotein apbE precursor|
          Length = 316

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +3

Query: 174 YYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV 290
           YY +WG  +  +G  P+  SW++    +   +H  N+ +
Sbjct: 194 YYVEWGGEIKTSGKHPSGRSWAIASSATPEILHLNNSSI 232

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>RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 614

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
 Frame = -3

Query: 311 DRNLATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 132
           D N+A P + VP+          +A   E     GDDE  P   + R  +       P  
Sbjct: 170 DDNIAAPTEEVPIPGTKAAAAKEEADDDEEESEGGDDEEEPKAALTRSSQPSVSVRYPSS 229

Query: 131 FSE-QGRRQWR 102
           FS+ QG  + R
Sbjct: 230 FSDHQGPEEKR 240

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>QUIA_XANCJ (Q9XD78) Probable quinate dehydrogenase [Pyrroloquinoline-quinone]|
           (EC 1.1.99.25)
          Length = 790

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = -3

Query: 317 GGDRNLATPDQRVPLVNRAQGQPLLDAPGP------ERRRGAGDDEALPPLRVVRQL-ED 159
           GG R  A  DQ    +NR+ G+P   +PGP          G G ++ L PL+V  ++   
Sbjct: 159 GGSR-FAALDQ----INRSNGRPAAGSPGPTTPGEIANSDGNGAEDQLTPLQVGEKVFLC 213

Query: 158 HGHRVLPHLFSEQGRRQWR 102
             H  L  L +  G++ WR
Sbjct: 214 TPHNNLIALDASTGKQLWR 232

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>MUTH_ECOL6 (Q8FEA9) DNA mismatch repair protein mutH (Methyl-directed mismatch|
           repair protein)
          Length = 228

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 350 HHMVAVLTCEAGGDRNLATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDD-EALPPLRVV 174
           H +  VL     G+R+       +PL  R  G PLL +P  E  R   +D E L  + V+
Sbjct: 114 HKLKRVLWIPVEGERS-------IPLAKRRVGSPLLWSPNEEEDRQLREDWEELMDMIVL 166

Query: 173 RQLE 162
            Q+E
Sbjct: 167 GQIE 170

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>GEMI5_HUMAN (Q8TEQ6) Gem-associated protein 5 (Gemin5)|
          Length = 1508

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 215 GAGDDEALPPLRVVRQLEDHGHRVLPHLFS 126
           GAG+    PP RV+ +L  H  RV    FS
Sbjct: 44  GAGESPGTPPFRVIGELVGHTERVSGFTFS 73

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>DTX1_HUMAN (Q86Y01) Protein deltex-1 (Deltex-1) (Deltex1) (hDTX1)|
          Length = 620

 Score = 24.3 bits (51), Expect(2) = 5.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 266 RAQGQPLLDAPGPERRRGAGDDEALPP 186
           R  GQ  L+ PGP+R        ++PP
Sbjct: 287 RTPGQNNLNRPGPQRTTSVSARASIPP 313



 Score = 22.3 bits (46), Expect(2) = 5.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 309 PKPGHTRPARSPGEPG 262
           P P    P RSPG PG
Sbjct: 269 PAPPPGAPPRSPGAPG 284

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>MUTH_SHIFL (Q83QC1) DNA mismatch repair protein mutH (Methyl-directed mismatch|
           repair protein)
          Length = 228

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 350 HHMVAVLTCEAGGDRNLATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDD-EALPPLRVV 174
           H +  VL     G+R+       +PL  R  G PLL +P  E  R   +D E L  + V+
Sbjct: 114 HKLKRVLWIPVEGERS-------IPLAQRRVGSPLLWSPNEEEDRQLREDWEELMDMIVL 166

Query: 173 RQLE 162
            Q+E
Sbjct: 167 GQVE 170

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>MUTH_ECOLI (P06722) DNA mismatch repair protein mutH (Methyl-directed mismatch|
           repair protein)
          Length = 228

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 350 HHMVAVLTCEAGGDRNLATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDD-EALPPLRVV 174
           H +  VL     G+R+       +PL  R  G PLL +P  E  R   +D E L  + V+
Sbjct: 114 HKLKRVLWIPVEGERS-------IPLAQRRVGSPLLWSPNEEEDRQLREDWEELMDMIVL 166

Query: 173 RQLE 162
            Q+E
Sbjct: 167 GQVE 170

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>MUTH_ECO57 (Q8X6K2) DNA mismatch repair protein mutH (Methyl-directed mismatch|
           repair protein)
          Length = 228

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 350 HHMVAVLTCEAGGDRNLATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDD-EALPPLRVV 174
           H +  VL     G+R+       +PL  R  G PLL +P  E  R   +D E L  + V+
Sbjct: 114 HKLKRVLWIPVEGERS-------IPLAQRRVGSPLLWSPNEEEDRQLREDWEELMDMIVL 166

Query: 173 RQLE 162
            Q+E
Sbjct: 167 GQVE 170

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>SP21_STIAU (Q06823) Spore protein SP21|
          Length = 188

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 194 EPRHRRLRAGARVLERQAGAVPEPGSPGERAGLVWPGF 307
           +P+  ++ +     +    A P P  PG  A L WPGF
Sbjct: 150 QPKRIQVASSGTEQKEHIKAYPAPAEPGLAAPLGWPGF 187

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>NETA_DROME (Q24567) Netrin-A precursor|
          Length = 726

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = -3

Query: 338 AVLTCEAGGDRNLATPDQRVPLVNRAQGQPL-LDAPGPERRRGAGDDEALPPLRVVRQLE 162
           A+L+ EAGG  +LA+    VPL N   G  +  +  G     G+G   A+    V  + +
Sbjct: 255 ALLSLEAGGATDLASGKYSVPLANGPAGNNIEANLGGDVATSGSGLHYAISDFSVGGRCK 314

Query: 161 DHGH 150
            +GH
Sbjct: 315 CNGH 318

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>CDGT_BACS0 (P05618) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 713

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 180 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSY 341
           T  GQ++ + G+   LG+W      ++ P++  N +V     W   VSV AG T E+ +
Sbjct: 625 TALGQNVFLTGNVSELGNWDPNN--AIGPMY--NQVVYQYPTWYYDVSVPAGQTIEFKF 679

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>POLG_POL2W (P23069) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2204

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 341 VAVLTCEAGGDRNLATPDQRVPLVNRAQGQPLLDAPG 231
           +A + CE  G RN+  P        R QG P+L+ PG
Sbjct: 320 IAPMCCEFNGLRNITVP--------RTQGLPVLNTPG 348

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>YOR1_BHV1S (Q08104) Hypothetical 16.1 kDa protein (ORF1)|
          Length = 148

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
 Frame = -3

Query: 293 PDQRVPLVNRAQGQPLL---DAPG--PERRRGAGDDEALP----PLRVVRQLEDHGHRVL 141
           P    P+V     +PLL    APG  P+R  GA   E +P    PL+  RQL D     L
Sbjct: 57  PPDYFPVV--PSSKPLLVKVPAPGASPDRTGGAVHFECVPAPRRPLQFFRQLYDGTFVKL 114

Query: 140 PHLFSEQ 120
           PH F ++
Sbjct: 115 PHNFPDE 121

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>N4BP3_HUMAN (O15049) NEDD4-binding protein 3 (N4BP3)|
          Length = 544

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +2

Query: 143 EHGDRDLQAAVLHAMGAEPRHRRLRAGARVLERQAGAVPEPGSPG 277
           E  +R+LQ   L    A+   RRLR   + L  Q G  PEP +PG
Sbjct: 313 ERSERNLQ---LQLFMAQQEQRRLR---KELRAQQGLAPEPRAPG 351

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>CDGT_BACS3 (P09121) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 712

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 180 TQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALV-----WCGQVSVAAGFTCEYSY 341
           T  GQ++ + G+   LG+W      ++ P++  N +V     W   VSV AG T E+ +
Sbjct: 624 TALGQNVFLTGNVSELGNWDPNN--AIGPMY--NQVVYQYPTWYYDVSVPAGQTIEFKF 678

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>Y3475_BRAJA (Q89PK5) Hypothetical transport protein bll3475|
          Length = 516

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
 Frame = +2

Query: 140 EEHGDRDLQAAVLHAMGAEPRHR----RLRAGARVLERQAGAVPEPG 268
           +EH    L  + + A  A P HR    R+R G RVL+ + G +  PG
Sbjct: 226 DEHSP--LIGSTVAAAEARPEHRLFIHRIRRGERVLQAEPGTILAPG 270

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>POLG_POL2L (P06210) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
           protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
           VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
           P2A); Core protein P2B; Core protein P2C; Core protein
           P3A; Genome
          Length = 2206

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 341 VAVLTCEAGGDRNLATPDQRVPLVNRAQGQPLLDAPG 231
           +A + CE  G RN+  P        R QG P+L+ PG
Sbjct: 320 IAPMCCEFNGLRNITVP--------RTQGLPVLNTPG 348

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>TSH_DROME (P22265) Protein teashirt|
          Length = 954

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -3

Query: 263 AQGQPLLDAPGPER-RRGAGDDE--ALPPLRVVRQLE 162
           A+ +P LDAP PE+ ++G G DE  + P ++  R+ E
Sbjct: 759 AEARPRLDAPTPEKQQQGGGHDEESSKPAIKQEREAE 795

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>VP40_HHV11 (P10210) Capsid protein P40 (Virion structural protein UL26)|
           [Contains: Capsid protein VP24 (EC 3.4.21.97)
           (Assemblin) (Protease); Capsid protein VP22A; UL26.5
           protein; C-terminal peptide]
          Length = 635

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 188 GAEPRHRRLRA--GARVLERQAGAVPEPGSPGERAGLVWPGFGRRR 319
           G  P   ++ A  GA   +RQAG  P  G PG R      G G+RR
Sbjct: 389 GPSPLEAQIAALVGAIAADRQAGGQPAAGDPGVR------GSGKRR 428

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>CDGT1_BACCI (P30920) Cyclomaltodextrin glucanotransferase precursor (EC|
           2.4.1.19) (Cyclodextrin-glycosyltransferase) (CGTase)
          Length = 718

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
 Frame = +3

Query: 180 TQWGQSLVIAGSAPALGSWSVKQGLSLSP-----VHQGNALVWCGQVSVAAGFTCEYSY 341
           T  GQ+L + G+   LG+WS     ++ P     +HQ     W   VSV AG   E+ +
Sbjct: 630 TTLGQNLYLTGNVAELGNWST-GSTAIGPAFNQVIHQ--YPTWYYDVSVPAGKQLEFKF 685

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>P25A_BOVIN (Q27957) Tubulin polymerization-promoting protein (TPPP) (25 kDa|
           brain-specific protein) (p25-alpha)
          Length = 218

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 312 RPKPGHTRPARSPGEP 265
           RPKP +  P +SPGEP
Sbjct: 5   RPKPANKTPPKSPGEP 20

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>DEF1_STRCO (Q9RD27) Peptide deformylase 1 (EC 3.5.1.88) (PDF 1) (Polypeptide|
           deformylase 1)
          Length = 218

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 23/58 (39%), Positives = 27/58 (46%)
 Frame = -3

Query: 302 LATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDDEALPPLRVVRQLEDHGHRVLPHLF 129
           + TP  RVPL  R   + LL   GP     AGD    P LR  R  E +  +V P LF
Sbjct: 1   MGTPSDRVPLAERV--EELLAVGGPLPIVAAGD----PVLR--RAAEPYDGQVAPALF 50

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>RLUC_SHIFL (P0AA40) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 230 PERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 132
           PE +  AGD+  +PP+RV  + E+    V PHL
Sbjct: 56  PEYKLEAGDEVRIPPVRVAEREEE---AVSPHL 85

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>RLUC_SALTY (Q8ZQ16) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 230 PERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 132
           PE +  AGD+  +PP+RV  + E+    V PHL
Sbjct: 56  PEYKLEAGDEVRIPPVRVAEREEE---AVSPHL 85

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>RLUC_ECOLI (P0AA39) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 230 PERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 132
           PE +  AGD+  +PP+RV  + E+    V PHL
Sbjct: 56  PEYKLEAGDEVRIPPVRVAEREEE---AVSPHL 85

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>RLUC_ECOL6 (Q8FIP7) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 230 PERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 132
           PE +  AGD+  +PP+RV  + E+    V PHL
Sbjct: 56  PEYKLEAGDEVRIPPVRVAEREEE---AVSPHL 85

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>RLUC_ECO57 (Q8X8J3) Ribosomal large subunit pseudouridine synthase C (EC|
           5.4.99.-) (rRNA-uridine isomerase C) (rRNA
           pseudouridylate synthase C)
          Length = 319

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 230 PERRRGAGDDEALPPLRVVRQLEDHGHRVLPHL 132
           PE +  AGD+  +PP+RV  + E+    V PHL
Sbjct: 56  PEYKLEAGDEVRIPPVRVAEREEE---AVSPHL 85

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>MRAW_XANOR (Q5GW34) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 337

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 212 LRAGARVLERQAGAVPEPGSP 274
           LR G  +LER++G +P P SP
Sbjct: 308 LRIGDSLLERRSGRIPNPQSP 328

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>GLMU_STRMU (Q8DSX2) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 459

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/68 (25%), Positives = 30/68 (44%)
 Frame = +3

Query: 120 LLAEEMGKNTVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVKQGLSLSPVHQGNALVWCG 299
           L +E++G     ++ +       GQ+LVIAG  P +   S+K  L     H+  A +   
Sbjct: 71  LQSEQLGTGHAVMMAESSLAELEGQTLVIAGDTPLIRGESLKNLLHYHKSHKNVATILTA 130

Query: 300 QVSVAAGF 323
           +     G+
Sbjct: 131 EADDPFGY 138

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>GEMI5_MOUSE (Q8BX17) Gem-associated protein 5 (Gemin5)|
          Length = 1502

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 215 GAGDDEALPPLRVVRQLEDHGHRVLPHLFS 126
           GAG     PP RVV +L  H  RV    FS
Sbjct: 44  GAGASPGAPPFRVVGELVGHTERVSGFTFS 73

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>MUTH_SALTY (Q8ZMA8) DNA mismatch repair protein mutH (Methyl-directed mismatch|
           repair protein)
          Length = 231

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 350 HHMVAVLTCEAGGDRNLATPDQRVPLVNRAQGQPLLDAPGPERRRGAG-DDEALPPLRVV 174
           H +  VL     GDR+       +PL  R  G PLL +P  E  R    D E L  + V+
Sbjct: 115 HKLKRVLWVPVEGDRS-------IPLAERRVGSPLLWSPSEEEDRQLRLDWEELMDMIVL 167

Query: 173 RQLE 162
            Q+E
Sbjct: 168 GQVE 171

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>MUTH_SALTI (Q8Z410) DNA mismatch repair protein mutH (Methyl-directed mismatch|
           repair protein)
          Length = 231

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 350 HHMVAVLTCEAGGDRNLATPDQRVPLVNRAQGQPLLDAPGPERRRGAG-DDEALPPLRVV 174
           H +  VL     GDR+       +PL  R  G PLL +P  E  R    D E L  + V+
Sbjct: 115 HKLKRVLWVPVEGDRS-------IPLAERRVGSPLLWSPSEEEDRQLRLDWEELMDMIVL 167

Query: 173 RQLE 162
            Q+E
Sbjct: 168 GQVE 171

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>ILVB_KLETE (Q04524) Acetolactate synthase, catabolic (EC 2.2.1.6) (ALS)|
          Length = 559

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 308 RNLATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDDE-ALPPLRVVRQLED 159
           R + TP     L +R + + LLD      RRGA  ++ AL PLR+VR ++D
Sbjct: 338 RLVLTPQAADILADRQRQRELLD------RRGAQLNQFALHPLRIVRAMQD 382

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>YL409_YEAST (Q06078) Hypothetical 104.8 kDa Trp-Asp repeats-containing protein|
           in RPL31B-VIP1 intergenic region
          Length = 939

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 182 RVVRQLEDHGHRVLPHLFSEQGRRQWRPRAGMES 81
           RVVRQL  H +R+    FS +GR  W   A ++S
Sbjct: 576 RVVRQLWGHSNRITAFDFSPEGR--WIVSASLDS 607

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>TOP2_ARATH (P30182) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)|
          Length = 1473

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 108 LAPSLLAEEMGKNTVTVIFKLPYYTQWGQSLVIAGSAPALGSWSVK--QGLSLSPVHQG 278
           + P + A   G   V   + +P Y +W +SL   G+A     W +K  +GL  S   +G
Sbjct: 572 ITPIVKATRKGTKKVLSFYSMPEYEEWKESL--KGNAT---GWDIKYYKGLGTSTAEEG 625

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>DBX1_MOUSE (P52950) Homeobox protein DBX1|
          Length = 335

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 305 NLATPDQRVPLVNRAQGQPLLDAPGPERRRGAGDDEALPP 186
           +L+ P Q  P      G   L +PG   RRG+    AL P
Sbjct: 62  SLSPPSQEAPAALADSGTSDLGSPGSGSRRGSSPQTALSP 101

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>AGP3_YEAST (P43548) General amino acid permease AGP3|
          Length = 558

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 210 GSAPALGSWSVKQGLSLSPVHQGNALVWCGQVSVAAGFTCEYSYHV 347
           G AP + +W+ ++G+ +  +   NAL     ++V+ G    YSY V
Sbjct: 363 GLAPKILAWTDRRGVPIPAITVFNALGLISLMNVSVGAANAYSYIV 408

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>SRCA_RABIT (P13666) Sarcalumenin precursor|
          Length = 908

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 293 PDQRVPLVNRAQGQPLLDAPGPERRRGAGDDEALPP 186
           P+  +P  +  +  P  DA GP   +G     ALPP
Sbjct: 96  PEASLPNASATESAPPGDATGPREEQGPAAASALPP 131

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 16/38 (42%), Positives = 17/38 (44%)
 Frame = +2

Query: 191 AEPRHRRLRAGARVLERQAGAVPEPGSPGERAGLVWPG 304
           A P   R +AG        GA  EPG PGER     PG
Sbjct: 557 AGPPGARGQAGVMGFPGPKGAAGEPGKPGERGAPGPPG 594

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>POLG_HCVJP (Q9DHD6) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 195  SLVIAGSAPA-----LGSWSVKQGLSLSPVHQGNALVWCGQVSVAAG 320
            SL+I G   A     L +W+VK  L L+P+ + + L   G  +V AG
Sbjct: 2951 SLIIQGGRAATCGRYLFNWAVKTKLKLTPLPEASRLDLSGWFTVGAG 2997


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,160,763
Number of Sequences: 219361
Number of extensions: 913872
Number of successful extensions: 4185
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 3763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4180
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result