ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK099930.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 4e-22
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
3dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic D... 107 3e-20
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
5gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome... 64 4e-07
6dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 48 0.021
7ref|XM_359978.1| Magnaporthe grisea 70-15 hypothetical protein (... 46 0.084
8gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 46 0.084
9ref|XM_472288.1| Oryza sativa (japonica cultivar-group), predic... 44 0.33
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.33
11dbj|AK119958.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.33
12emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 44 0.33
13ref|NM_196907.1| Oryza sativa (japonica cultivar-group) unknown ... 40 5.2
14gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
15gb|AC135928.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
16ref|XM_417896.1| PREDICTED: Gallus gallus MLL protein (mll), mRNA 40 5.2
17gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
18gb|AY258009.2| Streptomyces clavuligerus clavulanic acid biosynt... 40 5.2
19gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 gen... 40 5.2
20emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.2
21gb|AY034175.1| Streptomyces clavuligerus clavulanic acid gene cl... 40 5.2
22gb|DQ397619.1| Cenarchaeum symbiosum clone C11A07, complete sequ... 40 5.2
23dbj|AB125331.1| Dicologlossa cuneata mitochondrial cytb gene for... 40 5.2
24gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 5.2
25gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.2
26gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.2
27dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
28dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
29dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
30dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
31dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
32dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
33dbj|AK109163.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
34dbj|AK108572.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
35dbj|AK068341.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.2
36gb|AY105796.1| Zea mays PCO081368 mRNA sequence 40 5.2
37gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
38gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
39gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.2
40emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.2 
>dbj|AK099930.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013118L18, full
            insert sequence
          Length = 3398

 Score =  113 bits (57), Expect = 4e-22
 Identities = 114/133 (85%)
 Strand = Plus / Minus

                                                                        
Query: 254  ccacgatccggctccacaaggacggcgtgacggccgtcgccctcgcgccgggctccggcg 313
            ||||||||||||| |||||||| ||||| |||||  ||||| ||||||||||||||||||
Sbjct: 2290 ccacgatccggcttcacaaggatggcgtcacggcgctcgccgtcgcgccgggctccggcg 2231

                                                                        
Query: 314  gctcgctcgcgtccggttccatcgaccactcggtcaagttctactccttcccagacggca 373
              ||||| |||||||| |||||||| ||||| ||||||||||  || |||||||| ||  
Sbjct: 2230 cgtcgctggcgtccggctccatcgatcactccgtcaagttctgttctttcccagaggggg 2171

                         
Query: 374  cgttccagagcaa 386
             ||||||||||||
Sbjct: 2170 tgttccagagcaa 2158



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Minus

                                                                        
Query: 154  cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccgccgcg 213
            ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| |||
Sbjct: 2402 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccgctgcg 2343

             
Query: 214  g 214
            |
Sbjct: 2342 g 2342



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 62   ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 111
            |||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 2488 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 2439
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  107 bits (54), Expect = 3e-20
 Identities = 90/102 (88%)
 Strand = Plus / Plus

                                                                           
Query: 254     ccacgatccggctccacaaggacggcgtgacggccgtcgccctcgcgccgggctccggcg 313
               ||||||||||||| |||||||| ||||| |||||  ||||| ||||||||||||||||||
Sbjct: 3065840 ccacgatccggcttcacaaggatggcgtcacggcgctcgccgtcgcgccgggctccggcg 3065899

                                                         
Query: 314     gctcgctcgcgtccggttccatcgaccactcggtcaagttct 355
                 ||||| |||||||| |||||||| ||||| ||||||||||
Sbjct: 3065900 cgtcgctggcgtccggctccatcgatcactccgtcaagttct 3065941



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                           
Query: 154     cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccgccgcg 213
               ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| |||
Sbjct: 3065728 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccgctgcg 3065787

                
Query: 214     g 214
               |
Sbjct: 3065788 g 3065788



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                                 
Query: 62      ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 111
               |||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 3065642 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 3065691
to top
>dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1178_D01
          Length = 121768

 Score =  107 bits (54), Expect = 3e-20
 Identities = 90/102 (88%)
 Strand = Plus / Plus

                                                                         
Query: 254   ccacgatccggctccacaaggacggcgtgacggccgtcgccctcgcgccgggctccggcg 313
             ||||||||||||| |||||||| ||||| |||||  ||||| ||||||||||||||||||
Sbjct: 85806 ccacgatccggcttcacaaggatggcgtcacggcgctcgccgtcgcgccgggctccggcg 85865

                                                       
Query: 314   gctcgctcgcgtccggttccatcgaccactcggtcaagttct 355
               ||||| |||||||| |||||||| ||||| ||||||||||
Sbjct: 85866 cgtcgctggcgtccggctccatcgatcactccgtcaagttct 85907



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 55/61 (90%)
 Strand = Plus / Plus

                                                                         
Query: 154   cagcacgtcgtcaccgcgtccgccgccgacgtcgccatcctgatccacgacgccgccgcg 213
             ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| |||
Sbjct: 85694 cagcatgtcgtcaccgcatccgccgccgacgtggccatcctcatccatgacgccgctgcg 85753

              
Query: 214   g 214
             |
Sbjct: 85754 g 85754



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 45/50 (90%)
 Strand = Plus / Plus

                                                               
Query: 62    ccatgaaaggccgcgcggttaagcttcgggaggcgcacaaggcgggctcg 111
             |||||||||| |||||||| ||||| || |||||||||||||| ||||||
Sbjct: 85608 ccatgaaagggcgcgcggtgaagctccgagaggcgcacaaggccggctcg 85657
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                  
Query: 316    tcgctcgcgtccggttccatcgaccactcggtcaagttctactccttcccag 367
              ||||| |||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct: 694560 tcgctagcgtccggctccatcgaccactccgtcaagttctattctttcccag 694611



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 172      tccgccgccgacgtcgccat 191
                ||||||||||||||||||||
Sbjct: 24153109 tccgccgccgacgtcgccat 24153090



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 294      cctcgcgccgggctccggcg 313
                ||||||||||||||||||||
Sbjct: 17237928 cctcgcgccgggctccggcg 17237909
to top
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0041A22, complete sequence
          Length = 117919

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                 
Query: 316   tcgctcgcgtccggttccatcgaccactcggtcaagttctactccttcccag 367
             ||||| |||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct: 39759 tcgctagcgtccggctccatcgaccactccgtcaagttctattctttcccag 39810
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 268     cacaaggacggcgtgacggccgtcgccc 295
               |||||||||||||||||||||| |||||
Sbjct: 1667384 cacaaggacggcgtgacggccgacgccc 1667357
to top
>ref|XM_359978.1| Magnaporthe grisea 70-15 hypothetical protein (MG05353.4) partial
            mRNA
          Length = 1587

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 159  cgtcgtcaccgcgtccgccgccgacgtcgcc 189
            |||||||||| ||||||||||||||| ||||
Sbjct: 993  cgtcgtcacctcgtccgccgccgacgacgcc 1023
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 46.1 bits (23), Expect = 0.084
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 167     ccgcgtccgccgccgacgtcgcc 189
               |||||||||||||||||||||||
Sbjct: 3002477 ccgcgtccgccgccgacgtcgcc 3002499



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 170     cgtccgccgccgacgtcgcca 190
               |||||||||||||||||||||
Sbjct: 4873585 cgtccgccgccgacgtcgcca 4873605
to top
>ref|XM_472288.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 594

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 297 cgcgccgggctccggcggctcgctcg 322
           |||||||||||||||||| |||||||
Sbjct: 315 cgcgccgggctccggcgggtcgctcg 340
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 297      cgcgccgggctccggcggctcgctcg 322
                |||||||||||||||||| |||||||
Sbjct: 19127383 cgcgccgggctccggcgggtcgctcg 19127358
to top
>dbj|AK119958.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D01, full
           insert sequence
          Length = 1310

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 297 cgcgccgggctccggcggctcgctcg 322
           |||||||||||||||||| |||||||
Sbjct: 735 cgcgccgggctccggcgggtcgctcg 760
to top
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
             complete sequence
          Length = 151936

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 297   cgcgccgggctccggcggctcgctcg 322
             |||||||||||||||||| |||||||
Sbjct: 60904 cgcgccgggctccggcgggtcgctcg 60879
to top
>ref|NM_196907.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0071K18.4), mRNA
          Length = 783

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 195 gatccacgacgccgccgcgg 214
           ||||||||||||||||||||
Sbjct: 413 gatccacgacgccgccgcgg 432
to top
>gb|AC112160.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1579_G03,
             complete sequence
          Length = 121466

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   tccgccgccgacgtcgccat 191
             ||||||||||||||||||||
Sbjct: 39347 tccgccgccgacgtcgccat 39328
to top
>gb|AC135928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0686B10,
             complete sequence
          Length = 159672

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 294   cctcgcgccgggctccggcg 313
             ||||||||||||||||||||
Sbjct: 35240 cctcgcgccgggctccggcg 35221
to top
>ref|XM_417896.1| PREDICTED: Gallus gallus MLL protein (mll), mRNA
          Length = 12444

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 298 gcgccgggctccggcggctc 317
           ||||||||||||||||||||
Sbjct: 676 gcgccgggctccggcggctc 695
to top
>gb|AC136787.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052B22,
              complete sequence
          Length = 156725

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    ccgccgccgacgtcgccatc 192
              ||||||||||||||||||||
Sbjct: 101834 ccgccgccgacgtcgccatc 101853
to top
>gb|AY258009.2| Streptomyces clavuligerus clavulanic acid biosynthetic gene cluster,
            partial sequence
          Length = 13901

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  cgtcaccgcgtccgccgccg 181
            ||||||||||||||||||||
Sbjct: 6647 cgtcaccgcgtccgccgccg 6666
to top
>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence, complete
             sequence
          Length = 149758

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   gatccacgacgccgccgcgg 214
             ||||||||||||||||||||
Sbjct: 42115 gatccacgacgccgccgcgg 42134
to top
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 167    ccgcgtccgccgccgacgtcgcca 190
              ||||| ||||||||||||||||||
Sbjct: 173940 ccgcggccgccgccgacgtcgcca 173963
to top
>gb|AY034175.1| Streptomyces clavuligerus clavulanic acid gene cluster, partial
            sequence
          Length = 12162

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 162  cgtcaccgcgtccgccgccg 181
            ||||||||||||||||||||
Sbjct: 8154 cgtcaccgcgtccgccgccg 8173
to top
>gb|DQ397619.1| Cenarchaeum symbiosum clone C11A07, complete sequence
          Length = 38380

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   cgccgggctccggcggctcg 318
             ||||||||||||||||||||
Sbjct: 23767 cgccgggctccggcggctcg 23748
to top
>dbj|AB125331.1| Dicologlossa cuneata mitochondrial cytb gene for cytochrome b,
            complete cds
          Length = 1141

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  cgccgacgtcgccatcctga 196
            ||||||||||||||||||||
Sbjct: 987  cgccgacgtcgccatcctga 1006
to top
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 270    caaggacggcgtgacggccg 289
              ||||||||||||||||||||
Sbjct: 110729 caaggacggcgtgacggccg 110748
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     gtccgccgccgacgtcgcca 190
               ||||||||||||||||||||
Sbjct: 2558529 gtccgccgccgacgtcgcca 2558510
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 167     ccgcgtccgccgccgacgtcgcca 190
               ||||| ||||||||||||||||||
Sbjct: 1228379 ccgcgaccgccgccgacgtcgcca 1228356
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     gtccgccgccgacgtcgcca 190
               ||||||||||||||||||||
Sbjct: 4041971 gtccgccgccgacgtcgcca 4041952
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 173      ccgccgccgacgtcgccatc 192
                ||||||||||||||||||||
Sbjct: 16786272 ccgccgccgacgtcgccatc 16786291
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 195      gatccacgacgccgccgcgg 214
                ||||||||||||||||||||
Sbjct: 16618127 gatccacgacgccgccgcgg 16618108
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 173     ccgccgccgacgtcgccatc 192
               ||||||||||||||||||||
Sbjct: 5117204 ccgccgccgacgtcgccatc 5117223
to top
>dbj|AP003946.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1147_D11
          Length = 138444

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   ccgccgccgacgtcgccatc 192
             ||||||||||||||||||||
Sbjct: 76242 ccgccgccgacgtcgccatc 76261
to top
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1172G12
          Length = 171974

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    ccgccgccgacgtcgccatc 192
              ||||||||||||||||||||
Sbjct: 159318 ccgccgccgacgtcgccatc 159337
to top
>dbj|AK109163.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-G10, full
           insert sequence
          Length = 769

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 ccgccgccgacgtcgccatc 192
           ||||||||||||||||||||
Sbjct: 223 ccgccgccgacgtcgccatc 242
to top
>dbj|AK108572.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E11, full
           insert sequence
          Length = 711

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 294 cctcgcgccgggctccggcg 313
           ||||||||||||||||||||
Sbjct: 272 cctcgcgccgggctccggcg 291
to top
>dbj|AK068341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K10, full
           insert sequence
          Length = 2132

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 ccgccgccgacgtcgccatc 192
           ||||||||||||||||||||
Sbjct: 38  ccgccgccgacgtcgccatc 57
to top
>gb|AY105796.1| Zea mays PCO081368 mRNA sequence
          Length = 544

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 94  gcgcacaaggcgggctcgggctcc 117
           ||||||||||||| ||||||||||
Sbjct: 86  gcgcacaaggcggcctcgggctcc 109
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 195      gatccacgacgccgccgcgg 214
                ||||||||||||||||||||
Sbjct: 16626368 gatccacgacgccgccgcgg 16626349
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 173      ccgccgccgacgtcgccatc 192
                ||||||||||||||||||||
Sbjct: 16880042 ccgccgccgacgtcgccatc 16880061
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 171     gtccgccgccgacgtcgcca 190
               ||||||||||||||||||||
Sbjct: 4041958 gtccgccgccgacgtcgcca 4041939
to top
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132682

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   gtccgccgccgacgtcgcca 190
             ||||||||||||||||||||
Sbjct: 78392 gtccgccgccgacgtcgcca 78373


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,074,088
Number of Sequences: 3902068
Number of extensions: 2074088
Number of successful extensions: 49908
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48378
Number of HSP's gapped (non-prelim): 1530
length of query: 388
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 366
effective length of database: 17,147,199,772
effective search space: 6275875116552
effective search space used: 6275875116552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top