ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_786511.1| PREDICTED: Strongylocentrotus purpuratus simila... 48 0.018
2gb|AC018951.8|AC018951 Homo sapiens chromosome 11, clone RP11-30... 44 0.28
3emb|BX649276.6| Zebrafish DNA sequence from clone CH211-79C14 in... 42 1.1
4emb|AL627256.5| Zebrafish DNA sequence from clone RP71-1L10 in l... 40 4.4
5ref|XM_686107.1| PREDICTED: Danio rerio similar to Ras-related p... 40 4.4
6emb|BX664716.19| Zebrafish DNA sequence from clone DKEY-3D4 in l... 40 4.4
7dbj|AK016703.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 4.4
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
9gb|AC098810.3| Papio anubis clone RP41-317I9, complete sequence 40 4.4
10dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
11dbj|AK059070.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.4
12gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complet... 40 4.4
13gb|M33815.1|SMASFUABC S.marcescens periplasmic-binding-protein-d... 40 4.4
14dbj|AP002022.1| Homo sapiens genomic DNA, chromosome 4q22-q24, c... 40 4.4

>ref|XM_786511.1| PREDICTED: Strongylocentrotus purpuratus similar to bromodomain and
            WD repeat domain containing 2 (LOC586741), mRNA
          Length = 8214

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 4    tacctttggacatgtgttatgatg 27
            ||||||||||||||||||||||||
Sbjct: 2801 tacctttggacatgtgttatgatg 2824



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>gb|AC018951.8|AC018951 Homo sapiens chromosome 11, clone RP11-307P14, complete sequence
          Length = 194547

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 20    ttatgatgccacctgagtaact 41
             ||||||||||||||||||||||
Sbjct: 72431 ttatgatgccacctgagtaact 72410



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>emb|BX649276.6| Zebrafish DNA sequence from clone CH211-79C14 in linkage group 22,
             complete sequence
          Length = 84049

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 106   caaagcattttttccctgtca 126
             |||||||||||||||||||||
Sbjct: 66552 caaagcattttttccctgtca 66572



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>emb|AL627256.5| Zebrafish DNA sequence from clone RP71-1L10 in linkage group 8 Contains
             part of a gene for a novel peptide transporter, complete
             sequence
          Length = 169757

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   tgtgattgccatttctccac 265
             ||||||||||||||||||||
Sbjct: 18550 tgtgattgccatttctccac 18531



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>ref|XM_686107.1| PREDICTED: Danio rerio similar to Ras-related protein Ral-B
            (LOC562731), mRNA
          Length = 1830

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 246  tgtgattgccatttctccac 265
            ||||||||||||||||||||
Sbjct: 1022 tgtgattgccatttctccac 1003



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>emb|BX664716.19| Zebrafish DNA sequence from clone DKEY-3D4 in linkage group 9, complete
              sequence
          Length = 198430

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    tgtgattgccatttctccac 265
              ||||||||||||||||||||
Sbjct: 156483 tgtgattgccatttctccac 156502



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>dbj|AK016703.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4933406L23 product:unclassifiable, full
            insert sequence
          Length = 1504

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  agacacaggaaaaagagcct 179
            ||||||||||||||||||||
Sbjct: 1168 agacacaggaaaaagagcct 1187



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 45      tcctcacaccatgatctccaggtg 68
               ||||||||||| ||||||||||||
Sbjct: 5321540 tcctcacaccaagatctccaggtg 5321563



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>gb|AC098810.3| Papio anubis clone RP41-317I9, complete sequence
          Length = 166347

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   cactgcagcttccttgcttt 211
             ||||||||||||||||||||
Sbjct: 22986 cactgcagcttccttgcttt 22967



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>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0610E02
          Length = 135816

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     tcctcacaccatgatctccaggtg 68
              ||||||||||| ||||||||||||
Sbjct: 113128 tcctcacaccaagatctccaggtg 113151



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>dbj|AK059070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H03, full
           insert sequence
          Length = 514

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 45  tcctcacaccatgatctccaggtg 68
           ||||||||||| ||||||||||||
Sbjct: 294 tcctcacaccaagatctccaggtg 271



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>gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complete sequence
          Length = 198160

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   agacacaggaaaaagagcct 179
             ||||||||||||||||||||
Sbjct: 76505 agacacaggaaaaagagcct 76486



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>gb|M33815.1|SMASFUABC S.marcescens periplasmic-binding-protein-dependent iron transport
            protein (sfuABC) genes, complete cds
          Length = 4583

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 315  gccgccgctgctgttcgtcg 334
            ||||||||||||||||||||
Sbjct: 4082 gccgccgctgctgttcgtcg 4063



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>dbj|AP002022.1| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2198J12, complete
             sequence
          Length = 173933

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 113   ttttttccctgtcaagggtggtgc 136
             ||||||||| ||||||||||||||
Sbjct: 51001 ttttttcccagtcaagggtggtgc 51024


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,325,130
Number of Sequences: 3902068
Number of extensions: 3325130
Number of successful extensions: 59927
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59885
Number of HSP's gapped (non-prelim): 42
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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