Clone Name | bastl16g05 |
---|---|
Clone Library Name | barley_pub |
>gb|AC110544.13| Mus musculus chromosome 3, clone RP23-112A11, complete sequence Length = 201027 Score = 40.1 bits (20), Expect = 0.89 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 gtgctgagaatgatgacagc 43 |||||||||||||||||||| Sbjct: 34247 gtgctgagaatgatgacagc 34228
>ref|XM_220756.3| PREDICTED: Rattus norvegicus similar to prohibitin (LOC287559), mRNA Length = 846 Score = 40.1 bits (20), Expect = 0.89 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 gatgacagctctatgcccag 54 |||||||||||||||||||| Sbjct: 114 gatgacagctctatgcccag 95
>gb|AC124680.10| Mus musculus chromosome 14, clone RP23-383A19, complete sequence Length = 202809 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 aggtgctgagaatgatgac 40 ||||||||||||||||||| Sbjct: 171458 aggtgctgagaatgatgac 171440
>emb|AL442064.10| Human DNA sequence from clone RP11-272D1 on chromosome 9 Contains the 3' end of the EDG2 gene for endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2, complete sequence Length = 169905 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 gcctgtacaggaaggtgct 28 ||||||||||||||||||| Sbjct: 58851 gcctgtacaggaaggtgct 58833
>emb|AL157881.14| Human DNA sequence from clone RP11-104M22 on chromosome 9q31.1-32 Contains the 3' end of the MUSK gene for muscle, skeletal, receptor tyrosine kinase and the 3' end of the EDG2 gene for endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 2, complete sequence Length = 162726 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 gcctgtacaggaaggtgct 28 ||||||||||||||||||| Sbjct: 142225 gcctgtacaggaaggtgct 142207
>emb|AL022720.1|HS357K22 Human DNA sequence from clone RP3-357K22 on chromosome Xq27.1-27.3, complete sequence Length = 145638 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 13 tgtacaggaaggtgctgag 31 ||||||||||||||||||| Sbjct: 20685 tgtacaggaaggtgctgag 20667
>ref|XM_792726.1| PREDICTED: Strongylocentrotus purpuratus similar to potassium channel tetramerisation domain containing 10 (LOC593241), mRNA Length = 1206 Score = 38.2 bits (19), Expect = 3.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 1 tctgccagagcctgtacaggaag 23 |||||||||| |||||||||||| Sbjct: 582 tctgccagagtctgtacaggaag 604
>emb|AL731726.11| Mouse DNA sequence from clone RP23-97P13 on chromosome 11 Contains a novel gene and a CpG island, complete sequence Length = 47745 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 tacaggaaggtgctgagaa 33 ||||||||||||||||||| Sbjct: 34096 tacaggaaggtgctgagaa 34114
>dbj|AK148915.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120462I01 product:unclassifiable, full insert sequence Length = 1579 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 tctgccagagcctgtacag 19 ||||||||||||||||||| Sbjct: 940 tctgccagagcctgtacag 958
>dbj|AK148833.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120453C11 product:hypothetical protein, full insert sequence Length = 4012 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 tctgccagagcctgtacag 19 ||||||||||||||||||| Sbjct: 3509 tctgccagagcctgtacag 3527
>gb|AC105926.5| Homo sapiens BAC clone RP11-801F10 from 2, complete sequence Length = 93438 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 acaggaaggtgctgagaat 34 ||||||||||||||||||| Sbjct: 84678 acaggaaggtgctgagaat 84696
>gb|AC164978.2| Mus musculus BAC clone RP23-342O10 from chromosome 14, complete sequence Length = 206840 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 tctgccagagcctgtacag 19 ||||||||||||||||||| Sbjct: 186658 tctgccagagcctgtacag 186676
>gb|AC173482.1| Mus musculus BAC clone RP23-383F20 from chromosome 14, complete sequence Length = 216037 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 22 aggtgctgagaatgatgac 40 ||||||||||||||||||| Sbjct: 4146 aggtgctgagaatgatgac 4128
>gb|AC150746.2| Mus musculus BAC clone RP23-364B18 from 6, complete sequence Length = 215490 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 tgacagctctatgcccagt 55 ||||||||||||||||||| Sbjct: 199593 tgacagctctatgcccagt 199611
>gb|AC127320.4| Mus musculus BAC clone RP23-230O23 from chromosome 6, complete sequence Length = 197402 Score = 38.2 bits (19), Expect = 3.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 tgacagctctatgcccagt 55 ||||||||||||||||||| Sbjct: 46496 tgacagctctatgcccagt 46514 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 716,398 Number of Sequences: 3902068 Number of extensions: 716398 Number of successful extensions: 88969 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88943 Number of HSP's gapped (non-prelim): 26 length of query: 84 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 63 effective length of database: 17,151,101,840 effective search space: 1080519415920 effective search space used: 1080519415920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)