ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GPC2_HUMAN (Q8N158) Glypican-2 precursor 31 0.73
2SC10A_MOUSE (Q6QIY3) Sodium channel protein type 10 alpha subuni... 30 1.6
3Y4QF_RHISN (P55627) Probable peptidase y4qF (EC 3.4.21.-) 29 3.6
4BTNL2_RAT (Q6MG97) Butyrophilin-like protein 2 precursor 28 4.7
5GPC2_RAT (P51653) Glypican-2 precursor (Cerebroglycan) (HSPG M13) 28 4.7
6GPC2_MOUSE (Q8BKV1) Glypican-2 precursor 28 4.7
7E13B_SOYBN (P52395) Glucan endo-1,3-beta-glucosidase (EC 3.2.1.3... 28 6.1
8E13A_SOYBN (Q03773) Glucan endo-1,3-beta-glucosidase precursor (... 28 6.1
9104K_THEPA (P15711) 104 kDa microneme-rhoptry antigen precursor ... 28 6.1
10MYST3_MOUSE (Q8BZ21) Histone acetyltransferase MYST3 (EC 2.3.1.4... 28 8.0

>GPC2_HUMAN (Q8N158) Glypican-2 precursor|
          Length = 579

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -1

Query: 202 ASGSGGERERESPRLASATLFLLPRD*APQNPNPPRRGED*NKGGSG 62
           ASGSGG ++     +A A   + P    P+ P PPRR     KGG G
Sbjct: 499 ASGSGGGQQYADDWMAGA---VAPPARPPRPPYPPRRDGSGGKGGGG 542



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>SC10A_MOUSE (Q6QIY3) Sodium channel protein type 10 alpha subunit (Sodium|
           channel protein type X alpha subunit) (Voltage-gated
           sodium channel alpha subunit Nav1.8) (Peripheral nerve
           sodium channel 3) (Sensory neuron sodium channel)
          Length = 1958

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -1

Query: 136 LPRD*APQNPNP-PRRGED*NKG 71
           LPR   PQ+PNP PRRGE+  +G
Sbjct: 548 LPRSPLPQSPNPGPRRGEEGQRG 570



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>Y4QF_RHISN (P55627) Probable peptidase y4qF (EC 3.4.21.-)|
          Length = 754

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +3

Query: 177 SLSPPLPEAQPRIRV 221
           SL PPLP A+PRIRV
Sbjct: 36  SLRPPLPRAEPRIRV 50



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>BTNL2_RAT (Q6MG97) Butyrophilin-like protein 2 precursor|
          Length = 454

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 79  SNPPLAVEG*GFEGPNLVVVERGW 150
           S+P + VEG G EG  LV   RGW
Sbjct: 146 SSPNIHVEGPGEEGVQLVCTSRGW 169



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>GPC2_RAT (P51653) Glypican-2 precursor (Cerebroglycan) (HSPG M13)|
          Length = 579

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -1

Query: 202 ASGSGGERERESPRLASATLFLLPRD*APQNPNPPRRGED*NKGGSG 62
           ASGSGG ++      A A   + P    P+ P PPRR     +GGSG
Sbjct: 497 ASGSGGGQQYADDWKAGAAPVVPPAR-PPRPPRPPRRDGLGVRGGSG 542



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>GPC2_MOUSE (Q8BKV1) Glypican-2 precursor|
          Length = 579

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -1

Query: 202 ASGSGGERERESPRLASATLFLLPRD*APQNPNPPRRGED*NKGGSG 62
           ASGSGG ++      A A   + P    P+ P PPRR     +GGSG
Sbjct: 497 ASGSGGGQQYADDWKAGAVPVVPPAR-PPRPPRPPRRDGLGVRGGSG 542



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>E13B_SOYBN (P52395) Glucan endo-1,3-beta-glucosidase (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
           (Fragment)
          Length = 255

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 94  AVEG*GFEGPNLVVVERGWPRRGGATLSL 180
           A+E  G     +VV E GWP  GGA  S+
Sbjct: 168 ALENVGASNLQIVVSESGWPSEGGAGASI 196



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>E13A_SOYBN (Q03773) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)|
           ((1->3)-beta-glucan endohydrolase)
           ((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
          Length = 347

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 94  AVEG*GFEGPNLVVVERGWPRRGGATLSL 180
           A+E  G    N+VV E GWP  GG   SL
Sbjct: 255 ALEKAGGGSLNIVVSESGWPSSGGTATSL 283



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>104K_THEPA (P15711) 104 kDa microneme-rhoptry antigen precursor (p104)|
          Length = 924

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 21/79 (26%)
 Frame = -1

Query: 265 PRSQKGPRPGSAHLATRILGCASGSGGE------------RERESPRLASAT-------- 146
           P S K P P   H  ++I   +    G             R+ +SPR AS T        
Sbjct: 547 PGSGKKPGPAREHKPSKIPTLSKKPSGPKDPKHPRDPKEPRKSKSPRTASPTRRPSPKLP 606

Query: 145 -LFLLPRD*APQNPNPPRR 92
            L  LP+  +P++P PP R
Sbjct: 607 QLSKLPKSTSPRSPPPPTR 625



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>MYST3_MOUSE (Q8BZ21) Histone acetyltransferase MYST3 (EC 2.3.1.48) (EC 2.3.1.-)|
           (MYST protein 3) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
           3) (Monocytic leukemia zinc finger protein) (Monocytic
           leukemia zinc finger homolog)
          Length = 2003

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -1

Query: 184 ERERESPRLASATLF---LLPRD*APQNPNPPRRG 89
           +++ E   LAS++      LPRD  P N  PPRRG
Sbjct: 834 DKKPEVKELASSSRLSKQALPRDSLPANSQPPRRG 868


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,859,779
Number of Sequences: 219361
Number of extensions: 510653
Number of successful extensions: 1393
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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