ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl16g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
2dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
3dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
4gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 42 0.88
5gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 gen... 40 3.5
6gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 geno... 40 3.5
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.5
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 3.5
9dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, comp... 40 3.5

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                           
Query: 93       cgccgtggagggttagggttttgaggg 119
                |||||||||||||||||||||||||||
Sbjct: 27513153 cgccgtggagggttagggttttgaggg 27513127



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>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0657H12
          Length = 142688

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                         
Query: 93     cgccgtggagggttagggttttgaggg 119
              |||||||||||||||||||||||||||
Sbjct: 104875 cgccgtggagggttagggttttgaggg 104849



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>dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A10, full
           insert sequence
          Length = 3437

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 93  cgccgtggagggttagggttttgaggg 119
           |||||||||||||||||||||||||||
Sbjct: 256 cgccgtggagggttagggttttgaggg 282



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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 42.1 bits (21), Expect = 0.88
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 248   tcctttttgggaccgaggata 268
             |||||||||||||||||||||
Sbjct: 91849 tcctttttgggaccgaggata 91869



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>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence,
            complete sequence
          Length = 149758

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   gtggagggttagggttttga 116
            ||||||||||||||||||||
Sbjct: 2052 gtggagggttagggttttga 2071



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>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence,
            complete sequence
          Length = 162339

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   gtggagggttagggttttga 116
            ||||||||||||||||||||
Sbjct: 1907 gtggagggttagggttttga 1888



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 97       gtggagggttagggttttga 116
                ||||||||||||||||||||
Sbjct: 16657790 gtggagggttagggttttga 16657771



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 97       gtggagggttagggttttga 116
                ||||||||||||||||||||
Sbjct: 16666431 gtggagggttagggttttga 16666412



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>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    ctcgtggtagtagaaagagg 146
              ||||||||||||||||||||
Sbjct: 389539 ctcgtggtagtagaaagagg 389520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,255,833
Number of Sequences: 3902068
Number of extensions: 1255833
Number of successful extensions: 23520
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23439
Number of HSP's gapped (non-prelim): 81
length of query: 268
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 246
effective length of database: 17,147,199,772
effective search space: 4218211143912
effective search space used: 4218211143912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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