>TXD11_MOUSE (Q8K2W3) Thioredoxin domain-containing protein 11|
          Length = 948

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 32  ESGGFGGSRPPSAVGEQRP-HISAMERVQLPG 124
           E  G GG++ P+ +G+ RP H  +M   QLPG
Sbjct: 894 ELEGQGGAKEPAPLGKARPNHSKSMGTTQLPG 925

>SYR_BACTN (Q8A3X5) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA|
           ligase) (ArgRS)
          Length = 597

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 16/65 (24%), Positives = 27/65 (41%)
 Frame = +2

Query: 2   ICRCTAEWRGESGGFGGSRPPSAVGEQRPHISAMERVQLPGWLETESSERKERGWYREEI 181
           IC+    W+     +G    P + G++  H+     V      + E +E  E+G  +EE 
Sbjct: 169 ICKSMLAWKK----YGNGETPESTGKKGDHLVGDYYVSFDKHYKAELAELMEKGMTKEEA 224

Query: 182 GGALP 196
             A P
Sbjct: 225 EAASP 229

>RARA_NOTVI (P18514) Retinoic acid receptor alpha (RAR-alpha)|
          Length = 458

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -1

Query: 207 DELDGRAPPISSLYHPXXXXXXXXXXSHPGSCTRSIAEMCGRCSPTA 67
           D L G+ P  SSL  P            PGSC+ S++    R SPT+
Sbjct: 421 DSLTGQPPRASSLAPP------------PGSCSPSLSPSSNRSSPTS 455

>POL2_BAMMN (P89684) Genome polyprotein 2 [Contains: Helper component|
           proteinase (EC 3.4.22.45) (HC-pro); 70 kDa protein]
          Length = 891

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 18  RSGGERAEALEEAVPRQPSVSSGHTSQLWSA 110
           RSGG R+ AL  A+P  P VS+     ++ A
Sbjct: 851 RSGGMRSRALHPAMPTMPGVSAATGRPIFQA 881

>LMNA_XENLA (P11048) Lamin-A|
          Length = 665

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 22  VEGRERRLWRKPSPVSRR*AAATHLSYGXXXXXXXXXXXXXXEEGE 159
           +EG E RL   PSP +++ +A T  S+               EEGE
Sbjct: 376 LEGEEERLRLSPSPNTQKRSARTIASHSGAHISSSASKRRRLEEGE 421

>HRPR_PSESY (P37930) Pathogenicity locus probable regulatory protein hrpR|
          Length = 314

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 111 TRSIAEMCGRCSPTADGGR 55
           T+ IA  CGR +PT D GR
Sbjct: 196 TQDIAAECGRSAPTLDNGR 214

>DVL3_MOUSE (Q61062) Segment polarity protein dishevelled homolog DVL-3|
           (Dishevelled-3) (DSH homolog 3)
          Length = 716

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 35  SGGFGGSRPPSAVGEQRPHISAMERVQLPGWLETES--SERKER 160
           +GG G SRPPS      PH S   +  L    ET+S  S ++ER
Sbjct: 106 TGGIGDSRPPSF----HPHASGGSQENLDNDTETDSLVSAQRER 145

>SECA_SPIOL (Q36795) Preprotein translocase secA subunit, chloroplast precursor|
          Length = 1036

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -1

Query: 309 CARSSLKMMAT-CCRCSSAGQ 250
           CARS+ +M ++ CCRCSS  Q
Sbjct: 4   CARSASQMSSSSCCRCSSFNQ 24


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,264,472
Number of Sequences: 219361
Number of extensions: 597037
Number of successful extensions: 1983
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1982
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)