Clone Name | bastl16g02 |
---|---|
Clone Library Name | barley_pub |
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like putative defense response protein, and putative alliin lyase genes, complete cds; and unknown genes Length = 106618 Score = 50.1 bits (25), Expect = 0.004 Identities = 49/57 (85%) Strand = Plus / Minus Query: 262 agagcatctacaacatgtggccatcatcttcaacgagcttcgagcgcatcgtcttca 318 |||||| || || |||||||||||| |||||||||||||| ||||||| |||||| Sbjct: 98424 agagcacctccagcatgtggccatcgtcttcaacgagctttcggcgcatcatcttca 98368
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 46.1 bits (23), Expect = 0.069 Identities = 23/23 (100%) Strand = Plus / Minus Query: 298 gcttcgagcgcatcgtcttcacc 320 ||||||||||||||||||||||| Sbjct: 1260052 gcttcgagcgcatcgtcttcacc 1260030
>emb|AL844532.18| Mouse DNA sequence from clone RP23-221O14 on chromosome 2, complete sequence Length = 207432 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 142 cagcgagaggaaggagagagggtgg 166 |||| |||||||||||||||||||| Sbjct: 27680 cagccagaggaaggagagagggtgg 27656
>gb|AC121823.3| Mus musculus BAC clone RP23-466I14 from chromosome 7, complete sequence Length = 192248 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gagagagggtggtacagagaggagatcg 182 |||||| || |||||||||||||||||| Sbjct: 74629 gagagaagggggtacagagaggagatcg 74656
>ref|XM_774060.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_440_95831_97684) partial mRNA Length = 1854 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 tggagcgcgtgcagctgcca 121 |||||||||||||||||||| Sbjct: 351 tggagcgcgtgcagctgcca 370
>gb|AC004910.2| Homo sapiens PAC clone RP5-859M6 from 7, complete sequence Length = 102703 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 cagctgccagggtggctaga 132 |||||||||||||||||||| Sbjct: 30119 cagctgccagggtggctaga 30100
>ref|XM_501337.1| Yarrowia lipolytica CLIB122, YALI0C01716g predicted mRNA Length = 1113 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 gtggccatcatcttcaacga 297 |||||||||||||||||||| Sbjct: 223 gtggccatcatcttcaacga 242
>emb|AL139135.15| Human DNA sequence from clone RP11-463J7 on chromosome 1q31.1-31.3 Contains a coronin actin binding protein 1C (CORO1C) pseudogene, the 3' end of a novel gene and a glycine cleavage system protein H (aminomethyl carrier) (GCSH) pseudogene, complete sequence Length = 165919 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cagctgccagggtggctaga 132 |||||||||||||||||||| Sbjct: 99794 cagctgccagggtggctaga 99813
>emb|AL136143.9| Human DNA sequence from clone RP3-399C22 on chromosome 20 Contains a putative novel gene, complete sequence Length = 87157 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 cagctgccagggtggctaga 132 |||||||||||||||||||| Sbjct: 51129 cagctgccagggtggctaga 51110
>emb|AL929155.4| Zebrafish DNA sequence from clone DKEY-265M8 in linkage group 7 Contains a novel gene similar to mouse and human MRPL46 (mitochondrial ribosomal protein L46), a novel gene similar to mouse and human MRPS11 (mitochondrial ribosomal protein S11) and four CpG islands, complete sequence Length = 173326 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 gagtggaggggagagagcgg 39 |||||||||||||||||||| Sbjct: 2779 gagtggaggggagagagcgg 2798
>gb|AC093433.2| Homo sapiens chromosome 1 clone RP11-363H12, complete sequence Length = 172613 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cagctgccagggtggctaga 132 |||||||||||||||||||| Sbjct: 38573 cagctgccagggtggctaga 38592
>gb|AC113935.2| Homo sapiens chromosome 1 clone RP4-706A16, complete sequence Length = 142422 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cagctgccagggtggctaga 132 |||||||||||||||||||| Sbjct: 131157 cagctgccagggtggctaga 131176
>gb|AC025187.6| Homo sapiens chromosome 5 clone CTD-2383I20, complete sequence Length = 137219 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cagctgccagggtggctaga 132 |||||||||||||||||||| Sbjct: 7331 cagctgccagggtggctaga 7350
>gb|AC025773.7| Homo sapiens chromosome 5 clone CTD-2287N17, complete sequence Length = 145876 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 cagctgccagggtggctaga 132 |||||||||||||||||||| Sbjct: 31885 cagctgccagggtggctaga 31866
>gb|AC137894.5| Homo sapiens chromosome 11, clone RP13-46H24, complete sequence Length = 165000 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gtgcagctgccagggtggct 129 |||||||||||||||||||| Sbjct: 101179 gtgcagctgccagggtggct 101198
>gb|AC012459.7| Homo sapiens BAC clone RP11-527G2 from 2, complete sequence Length = 175554 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gagaggaaggagagagggtg 165 |||||||||||||||||||| Sbjct: 127529 gagaggaaggagagagggtg 127548
>gb|AC105397.2| Homo sapiens BAC clone RP11-599D10 from 2, complete sequence Length = 40108 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 cagctgccagggtggctaga 132 |||||||||||||||||||| Sbjct: 37846 cagctgccagggtggctaga 37827
>emb|BX571970.20| Zebrafish DNA sequence from clone DKEY-276G11 in linkage group 7, complete sequence Length = 170614 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 gagtggaggggagagagcgg 39 |||||||||||||||||||| Sbjct: 45434 gagtggaggggagagagcgg 45415
>emb|AL133238.3|CNS01DUB Human chromosome 14 DNA sequence BAC C-2510G9 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 185132 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 cagctgccagggtggctaga 132 |||||||||||||||||||| Sbjct: 81982 cagctgccagggtggctaga 81963
>gb|AC174380.3| Mus musculus BAC clone RP24-196H4 from chromosome 7, complete sequence Length = 173395 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 155 gagagagggtggtacagagaggagatcg 182 |||||| || |||||||||||||||||| Sbjct: 106766 gagagaagggggtacagagaggagatcg 106793
>gb|U73630.1|U73630 Human Chromosome 11 Overlapping Cosmids cSRL125c1 and cSRL135f4, complete sequence Length = 43105 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 gtgcagctgccagggtggct 129 |||||||||||||||||||| Sbjct: 10907 gtgcagctgccagggtggct 10926
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gtggccatcatcttcaacga 297 |||||||||||||||||||| Sbjct: 239495 gtggccatcatcttcaacga 239476 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,371,750 Number of Sequences: 3902068 Number of extensions: 2371750 Number of successful extensions: 55522 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55463 Number of HSP's gapped (non-prelim): 59 length of query: 324 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 302 effective length of database: 17,147,199,772 effective search space: 5178454331144 effective search space used: 5178454331144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)